Wall clock time and date at job start Mon Mar 30 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47239 * 2 1 4 4 C 1.50696 * 109.47456 * 120.00471 * 2 1 3 5 5 H 1.07998 * 120.00211 * 119.99655 * 4 2 1 6 6 C 1.37879 * 119.99843 * 300.00274 * 4 2 1 7 7 N 1.31519 * 119.99776 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47362 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47208 * 119.99696 * 8 6 4 11 11 H 1.48497 * 109.47301 * 239.99599 * 8 6 4 12 12 N 1.46900 * 109.47033 * 240.00617 * 2 1 3 13 13 C 1.46900 * 110.99930 * 306.04514 * 12 2 1 14 14 C 1.46901 * 111.00442 * 69.99825 * 12 2 1 15 15 H 1.08998 * 109.47258 * 300.00442 * 14 12 2 16 16 C 1.53007 * 109.47071 * 59.99923 * 14 12 2 17 17 C 1.52997 * 109.47600 * 180.02562 * 14 12 2 18 18 C 1.53944 * 113.73142 * 277.59911 * 17 14 12 19 19 N 1.47956 * 86.17692 * 221.91898 * 18 17 14 20 20 C 1.47965 * 90.76623 * 24.69070 * 19 18 17 21 21 H 1.09001 * 109.46982 * 300.00016 * 1 2 3 22 22 H 1.09002 * 109.47196 * 59.99169 * 1 2 3 23 23 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99451 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.47339 * 183.95254 * 13 12 2 26 26 H 1.08994 * 109.47114 * 303.95665 * 13 12 2 27 27 H 1.08997 * 109.47133 * 63.95542 * 13 12 2 28 28 H 1.09004 * 109.47042 * 292.37370 * 16 14 12 29 29 H 1.08999 * 109.46711 * 52.36578 * 16 14 12 30 30 H 1.08992 * 109.47345 * 172.37142 * 16 14 12 31 31 H 1.08998 * 112.93753 * 49.29698 * 17 14 12 32 32 H 1.09001 * 113.75588 * 336.23129 * 18 17 14 33 33 H 1.08997 * 113.75842 * 107.60289 * 18 17 14 34 34 H 1.00900 * 110.99897 * 271.79516 * 19 18 17 35 35 H 1.09004 * 113.75711 * 220.99729 * 20 19 18 36 36 H 1.08997 * 113.75982 * 89.62949 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1456 -2.2879 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4091 15 1 0.6792 0.2553 -2.5105 16 6 2.4593 1.4503 -2.3009 17 6 2.2753 -0.6546 -3.6348 18 6 3.7830 -0.4657 -3.8815 19 7 3.4324 -0.3405 -5.3134 20 6 2.0643 0.0989 -4.9604 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7095 1.1615 3.4844 25 1 1.8663 -2.5519 -2.1651 26 1 1.6465 -2.5987 -0.3994 27 1 0.3556 -1.9519 -1.4401 28 1 1.9940 2.0411 -1.5118 29 1 3.5115 1.2928 -2.0643 30 1 2.3755 1.9808 -3.2493 31 1 1.9511 -1.6949 -3.6650 32 1 4.1879 0.4483 -3.4470 33 1 4.3797 -1.3483 -3.6510 34 1 3.4174 -1.2440 -5.7624 35 1 1.2877 -0.3326 -5.5920 36 1 1.9666 1.1780 -4.8415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686258065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:45 Heat of formation + Delta-G solvation = 26.358363 kcal Electronic energy + Delta-G solvation = -15108.587223 eV Core-core repulsion = 12821.417282 eV Total energy + Delta-G solvation = -2287.169941 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06725 -38.52824 -34.87503 -32.35103 -30.50518 -27.55996 -27.27997 -26.78904 -25.93272 -23.67483 -21.21784 -19.44517 -18.32468 -17.46714 -17.08013 -16.43677 -16.05744 -15.40508 -14.82993 -14.53260 -14.06333 -13.88224 -13.71357 -13.41722 -12.95381 -12.89344 -12.71616 -12.63049 -12.36248 -12.19004 -12.06106 -12.03423 -11.94844 -11.41082 -11.12014 -10.83439 -10.44540 -9.34932 -8.77245 -8.09351 -6.19293 1.40679 1.42933 1.54288 2.43414 3.17106 3.19886 3.29396 3.78853 3.91634 4.28525 4.37045 4.46955 4.52685 4.61763 4.71846 4.76915 4.83533 4.84400 4.89802 4.99995 5.06634 5.08631 5.12365 5.19412 5.25585 5.33182 5.49005 5.58064 5.73932 5.82702 6.26179 6.49385 6.54471 6.82070 6.95683 7.49912 8.96830 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052345 B = 0.007878 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.784787 B = 3553.346920 C = 3660.470448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.212 3.788 3 H 0.018 0.982 4 C -0.511 4.511 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.536 5.536 13 C 0.038 3.962 14 C 0.087 3.913 15 H 0.023 0.977 16 C -0.137 4.137 17 C -0.146 4.146 18 C 0.028 3.972 19 N -0.665 5.665 20 C 0.025 3.975 21 H 0.059 0.941 22 H 0.021 0.979 23 H 0.030 0.970 24 H 0.260 0.740 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.342 0.658 35 H 0.085 0.915 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -3.060 -12.060 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.105 3.895 3 H 0.035 0.965 4 C -0.549 4.549 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.259 5.259 13 C -0.111 4.111 14 C -0.022 4.022 15 H 0.041 0.959 16 C -0.194 4.194 17 C -0.166 4.166 18 C -0.101 4.101 19 N -0.292 5.292 20 C -0.105 4.105 21 H 0.078 0.922 22 H 0.040 0.960 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.104 0.896 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.293 -2.329 -12.211 12.641 hybrid contribution -1.406 -0.957 1.630 2.356 sum 0.887 -3.286 -10.581 11.115 Atomic orbital electron populations 1.22199 1.00955 0.98940 0.99648 1.19100 0.89505 0.93656 0.87218 0.96455 1.21446 1.30164 1.12261 0.91078 0.92743 1.25675 0.95532 0.95859 1.01783 1.70023 1.38172 1.24296 1.23804 0.85524 0.78023 0.78664 0.79507 1.19289 1.20780 1.20795 1.62312 1.58690 1.02805 1.02129 1.22223 0.96085 0.91448 1.01301 1.21522 0.96520 0.93942 0.90229 0.95933 1.21888 1.00734 0.95688 1.01074 1.24328 0.97614 1.00204 0.94455 1.23665 0.95170 1.02410 0.88889 1.65082 1.17763 1.31451 1.14945 1.23758 0.91929 1.01220 0.93597 0.92236 0.96025 0.95127 0.93097 0.90837 0.93014 0.96880 0.94832 0.92255 0.90504 0.88794 0.88720 0.91099 0.84313 0.89634 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.22 71.98 0.59 -7.16 16 2 C 0.21 10.68 2.12 44.17 0.09 10.77 16 3 H 0.02 0.98 5.99 -2.38 -0.01 0.96 16 4 C -0.51 -28.18 7.91 25.60 0.20 -27.97 16 5 H 0.05 3.02 7.12 -2.91 -0.02 3.00 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.14 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 N -0.54 -22.19 4.57 -876.19 -4.01 -26.20 16 13 C 0.04 1.42 8.30 127.69 1.06 2.48 16 14 C 0.09 2.98 2.02 44.92 0.09 3.07 16 15 H 0.02 0.83 6.62 -2.39 -0.02 0.81 16 16 C -0.14 -4.59 7.62 71.98 0.55 -4.04 16 17 C -0.15 -3.88 3.55 -10.15 -0.04 -3.91 16 18 C 0.03 0.73 8.16 86.41 0.71 1.43 16 19 N -0.67 -15.00 8.55 -524.18 -4.48 -19.48 16 20 C 0.03 0.56 8.26 86.40 0.71 1.27 16 21 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 22 H 0.02 0.94 6.69 -2.39 -0.02 0.93 16 23 H 0.03 1.44 6.41 -2.39 -0.02 1.43 16 24 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.07 2.28 6.05 -2.39 -0.01 2.26 16 26 H 0.05 2.14 6.76 -2.39 -0.02 2.12 16 27 H 0.01 0.48 6.46 -2.39 -0.02 0.47 16 28 H 0.03 1.28 6.62 -2.38 -0.02 1.26 16 29 H 0.06 2.04 6.57 -2.39 -0.02 2.03 16 30 H 0.08 2.11 6.19 -2.39 -0.01 2.10 16 31 H 0.09 2.41 6.06 -2.39 -0.01 2.39 16 32 H 0.09 2.66 5.64 -2.39 -0.01 2.65 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.34 6.39 8.89 -89.69 -0.80 5.59 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.10 2.18 6.30 -2.39 -0.02 2.17 16 Total: -1.00 -59.50 265.79 -1.52 -61.02 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.28 Total: 14.83 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.42 Total: -23.10 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -8.25 Total: -98.82 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.50 -1.52 -61.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.374 kcal (2) G-P(sol) polarization free energy of solvation -59.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds