Wall clock time and date at job start Mon Mar 30 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46902 * 111.00301 * 58.94930 * 12 2 1 14 14 C 1.46900 * 110.99735 * 295.00229 * 12 2 1 15 15 H 1.09001 * 109.47539 * 59.99429 * 14 12 2 16 16 C 1.53005 * 109.47093 * 299.99796 * 14 12 2 17 17 C 1.53001 * 109.47215 * 179.97438 * 14 12 2 18 18 C 1.53933 * 113.73356 * 278.76292 * 17 14 12 19 19 N 1.48192 * 86.10283 * 221.95816 * 18 17 14 20 20 C 1.47962 * 90.79694 * 24.59783 * 19 18 17 21 21 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 22 22 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46612 * 60.00252 * 13 12 2 26 26 H 1.08994 * 109.47587 * 180.02562 * 13 12 2 27 27 H 1.09004 * 109.47256 * 300.00998 * 13 12 2 28 28 H 1.08994 * 109.47093 * 59.99549 * 16 14 12 29 29 H 1.08994 * 109.47345 * 180.02562 * 16 14 12 30 30 H 1.09001 * 109.46629 * 300.00191 * 16 14 12 31 31 H 1.09004 * 112.93759 * 50.33249 * 17 14 12 32 32 H 1.08998 * 113.75944 * 336.23521 * 18 17 14 33 33 H 1.09003 * 113.75838 * 107.60533 * 18 17 14 34 34 H 1.00897 * 111.07218 * 137.52257 * 19 18 17 35 35 H 1.08997 * 113.75905 * 221.08240 * 20 19 18 36 36 H 1.09000 * 113.85205 * 89.73487 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 1 0.5632 0.1176 2.4784 16 6 2.2599 1.4411 2.3771 17 6 2.1743 -0.7114 3.6433 18 6 1.2804 -1.8857 4.0811 19 7 1.5231 -1.4215 5.4674 20 6 1.7989 -0.0512 4.9823 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7011 1.1560 -3.4844 25 1 1.8762 -2.6150 0.3646 26 1 1.9053 -2.5656 2.1438 27 1 0.4384 -2.0743 1.2638 28 1 1.8852 1.9755 1.5042 29 1 1.9850 1.9838 3.2815 30 1 3.3454 1.3626 2.3167 31 1 3.2301 -0.9701 3.5625 32 1 0.2427 -1.7905 3.7616 33 1 1.7054 -2.8657 3.8642 34 1 0.6745 -1.4482 6.0127 35 1 2.6373 0.4318 5.4841 36 1 0.9142 0.5831 4.9264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686258066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:48 Heat of formation + Delta-G solvation = 41.235000 kcal Electronic energy + Delta-G solvation = -15125.374735 eV Core-core repulsion = 12838.849893 eV Total energy + Delta-G solvation = -2286.524842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73953 -36.87799 -32.95026 -30.85741 -28.88568 -26.58605 -25.70086 -25.17275 -24.29876 -21.85478 -19.37535 -18.66760 -16.35698 -16.22204 -15.47675 -14.86803 -14.28694 -13.75345 -13.43602 -13.06808 -12.87747 -12.45487 -12.07297 -11.49907 -11.46419 -11.14440 -11.06606 -10.97503 -10.78853 -10.68187 -10.43591 -10.20562 -10.10233 -9.98012 -9.52791 -8.83937 -8.79950 -8.34032 -7.07172 -5.99007 -4.02132 3.33575 3.37713 3.40881 4.21629 4.41621 4.67063 4.87506 5.24598 5.33441 5.42371 5.54749 5.73996 5.81029 5.84876 5.93134 6.07229 6.08289 6.17139 6.31581 6.41641 6.53054 6.64996 6.70704 6.80342 6.87220 6.93364 7.17166 7.27874 7.55223 7.74603 7.87094 8.18483 8.42917 8.65743 9.03922 9.62603 11.08130 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054994 B = 0.007946 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.026804 B = 3522.725267 C = 3716.418678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.208 3.792 3 H 0.045 0.955 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.528 5.528 13 C 0.027 3.973 14 C 0.085 3.915 15 H 0.032 0.968 16 C -0.141 4.141 17 C -0.100 4.100 18 C 0.008 3.992 19 N -0.641 5.641 20 C 0.008 3.992 21 H 0.087 0.913 22 H 0.028 0.972 23 H 0.006 0.994 24 H 0.260 0.740 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.014 0.986 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.311 0.689 35 H 0.084 0.916 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -1.614 10.886 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.102 3.898 3 H 0.063 0.937 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.252 5.252 13 C -0.121 4.121 14 C -0.024 4.024 15 H 0.049 0.951 16 C -0.199 4.199 17 C -0.119 4.119 18 C -0.122 4.122 19 N -0.265 5.265 20 C -0.122 4.122 21 H 0.106 0.894 22 H 0.048 0.952 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.542 -1.849 10.970 11.138 hybrid contribution -1.653 -0.020 -1.177 2.029 sum -1.111 -1.870 9.793 10.032 Atomic orbital electron populations 1.22394 1.01223 0.99201 1.00344 1.19346 0.89487 0.95005 0.85987 0.93701 1.21120 1.30381 1.12500 0.89789 0.92048 1.24923 0.95270 0.95165 0.98957 1.69877 1.37103 1.23151 1.23418 0.86599 0.79221 0.79613 0.82183 1.20429 1.21430 1.20239 1.62404 1.59330 1.01699 1.01797 1.22428 0.96948 0.91501 1.01255 1.21574 0.96456 0.93923 0.90487 0.95061 1.21800 1.01607 0.95538 1.00929 1.23047 1.00985 0.94791 0.93051 1.23974 0.99130 1.00085 0.89025 1.66960 1.35988 1.12326 1.11249 1.23706 1.00938 0.91775 0.95808 0.89427 0.95248 0.97516 0.93018 0.91196 0.93042 0.96743 0.91782 0.93633 0.92176 0.88000 0.91881 0.89341 0.87667 0.89762 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.27 37.16 0.31 -3.86 16 2 C 0.21 5.16 2.09 -68.87 -0.14 5.02 16 3 H 0.05 1.22 6.05 -51.93 -0.31 0.90 16 4 C -0.50 -13.64 7.94 -34.44 -0.27 -13.92 16 5 H 0.06 1.68 6.75 -52.49 -0.35 1.33 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.50 11.31 55.43 0.63 -24.87 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.53 -11.18 4.61 -228.29 -1.05 -12.23 16 13 C 0.03 0.53 7.99 60.07 0.48 1.01 16 14 C 0.09 1.51 1.71 -67.71 -0.12 1.39 16 15 H 0.03 0.59 6.27 -51.93 -0.33 0.26 16 16 C -0.14 -2.40 8.80 37.16 0.33 -2.07 16 17 C -0.10 -1.49 2.97 -89.69 -0.27 -1.76 16 18 C 0.01 0.10 6.36 -2.63 -0.02 0.09 16 19 N -0.64 -8.23 8.53 -116.82 -1.00 -9.23 16 20 C 0.01 0.11 7.60 -2.76 -0.02 0.09 16 21 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 22 H 0.03 0.69 6.39 -51.93 -0.33 0.36 16 23 H 0.01 0.13 6.52 -51.93 -0.34 -0.21 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.07 1.48 6.53 -51.93 -0.34 1.14 16 26 H 0.05 0.86 4.55 -51.93 -0.24 0.63 16 27 H 0.01 0.28 6.28 -51.93 -0.33 -0.05 16 28 H 0.06 1.22 6.30 -51.93 -0.33 0.89 16 29 H 0.04 0.64 7.51 -51.93 -0.39 0.25 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.06 0.87 7.99 -51.93 -0.41 0.45 16 33 H 0.09 1.21 6.98 -51.93 -0.36 0.85 16 34 H 0.31 3.42 8.92 -39.29 -0.35 3.07 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 268.26 15.07 4.04 4.04 Total: -1.00 -28.07 268.26 -7.77 -35.83 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.55 Total: 2.59 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 0.18 Total: -12.53 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -1.42 Total: -46.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.07 -7.77 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.067 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds