Wall clock time and date at job start Mon Mar 30 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46902 * 111.00301 * 58.94930 * 12 2 1 14 14 C 1.46900 * 110.99735 * 295.00229 * 12 2 1 15 15 H 1.09001 * 109.47539 * 59.99429 * 14 12 2 16 16 C 1.53005 * 109.47093 * 299.99796 * 14 12 2 17 17 C 1.53001 * 109.47215 * 179.97438 * 14 12 2 18 18 C 1.53933 * 113.73356 * 278.76292 * 17 14 12 19 19 N 1.48192 * 86.10283 * 221.95816 * 18 17 14 20 20 C 1.47962 * 90.79694 * 24.59783 * 19 18 17 21 21 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 22 22 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46612 * 60.00252 * 13 12 2 26 26 H 1.08994 * 109.47587 * 180.02562 * 13 12 2 27 27 H 1.09004 * 109.47256 * 300.00998 * 13 12 2 28 28 H 1.08994 * 109.47093 * 59.99549 * 16 14 12 29 29 H 1.08994 * 109.47345 * 180.02562 * 16 14 12 30 30 H 1.09001 * 109.46629 * 300.00191 * 16 14 12 31 31 H 1.09004 * 112.93759 * 50.33249 * 17 14 12 32 32 H 1.08998 * 113.75944 * 336.23521 * 18 17 14 33 33 H 1.09003 * 113.75838 * 107.60533 * 18 17 14 34 34 H 1.00897 * 111.07218 * 137.52257 * 19 18 17 35 35 H 1.08997 * 113.75905 * 221.08240 * 20 19 18 36 36 H 1.09000 * 113.85205 * 89.73487 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 1 0.5632 0.1176 2.4784 16 6 2.2599 1.4411 2.3771 17 6 2.1743 -0.7114 3.6433 18 6 1.2804 -1.8857 4.0811 19 7 1.5231 -1.4215 5.4674 20 6 1.7989 -0.0512 4.9823 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7011 1.1560 -3.4844 25 1 1.8762 -2.6150 0.3646 26 1 1.9053 -2.5656 2.1438 27 1 0.4384 -2.0743 1.2638 28 1 1.8852 1.9755 1.5042 29 1 1.9850 1.9838 3.2815 30 1 3.3454 1.3626 2.3167 31 1 3.2301 -0.9701 3.5625 32 1 0.2427 -1.7905 3.7616 33 1 1.7054 -2.8657 3.8642 34 1 0.6745 -1.4482 6.0127 35 1 2.6373 0.4318 5.4841 36 1 0.9142 0.5831 4.9264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686258066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:48 Heat of formation + Delta-G solvation = 20.253060 kcal Electronic energy + Delta-G solvation = -15126.284580 eV Core-core repulsion = 12838.849893 eV Total energy + Delta-G solvation = -2287.434687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97389 -38.45177 -34.88259 -32.44913 -30.64073 -27.91280 -27.31898 -26.70734 -25.87941 -23.45781 -20.69995 -20.22603 -18.25205 -17.52053 -16.94548 -16.65096 -15.79884 -15.15373 -15.08178 -14.73138 -14.28539 -13.79598 -13.60405 -13.22484 -12.97529 -12.93895 -12.69627 -12.52506 -12.43111 -12.33800 -12.11118 -11.99929 -11.73036 -11.36997 -11.08922 -10.81797 -10.43360 -9.85883 -8.77113 -8.09281 -6.19317 1.42686 1.44025 1.51512 2.43639 3.16980 3.19799 3.31400 3.65786 3.92790 4.34783 4.41275 4.46314 4.47976 4.59493 4.66424 4.74344 4.83444 4.86899 4.90325 4.93040 4.93766 5.06606 5.14478 5.24225 5.28202 5.32758 5.44812 5.60374 5.75429 5.83832 6.25122 6.35324 6.54707 6.83889 6.95630 7.49777 8.96586 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054994 B = 0.007946 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.026804 B = 3522.725267 C = 3716.418678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.213 3.787 3 H 0.017 0.983 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.540 5.540 13 C 0.034 3.966 14 C 0.087 3.913 15 H 0.026 0.974 16 C -0.137 4.137 17 C -0.102 4.102 18 C 0.010 3.990 19 N -0.643 5.643 20 C 0.019 3.981 21 H 0.059 0.941 22 H 0.028 0.972 23 H 0.023 0.977 24 H 0.260 0.740 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.012 0.988 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.326 0.674 35 H 0.095 0.905 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -2.234 12.185 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.035 0.965 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.263 5.263 13 C -0.114 4.114 14 C -0.022 4.022 15 H 0.044 0.956 16 C -0.194 4.194 17 C -0.121 4.121 18 C -0.120 4.120 19 N -0.268 5.268 20 C -0.112 4.112 21 H 0.078 0.922 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.631 -2.478 12.292 12.555 hybrid contribution -1.675 0.190 -1.515 2.267 sum -1.044 -2.288 10.777 11.066 Atomic orbital electron populations 1.22184 1.00889 0.98841 0.99755 1.19078 0.89558 0.93650 0.87090 0.96480 1.21427 1.30402 1.12486 0.91181 0.92682 1.25667 0.95460 0.95852 1.01747 1.70005 1.37945 1.24265 1.23948 0.85641 0.78704 0.78685 0.78758 1.19766 1.21036 1.19876 1.62304 1.59618 1.02460 1.01950 1.22391 0.96768 0.90598 1.01685 1.21651 0.96215 0.94296 0.90065 0.95637 1.21762 1.01145 0.95301 1.01209 1.22980 1.00515 0.95837 0.92794 1.23919 0.98854 0.99550 0.89634 1.66922 1.36917 1.12303 1.10702 1.23702 1.01751 0.91894 0.93845 0.92203 0.95309 0.95791 0.93058 0.93288 0.90108 0.96925 0.94605 0.90397 0.92594 0.88984 0.91719 0.89264 0.86129 0.88640 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.27 71.98 0.60 -7.09 16 2 C 0.21 10.77 2.09 44.17 0.09 10.86 16 3 H 0.02 0.97 6.05 -2.38 -0.01 0.95 16 4 C -0.52 -28.61 7.94 25.60 0.20 -28.41 16 5 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.29 11.31 21.45 0.24 -53.04 16 8 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.54 -22.69 4.61 -876.18 -4.04 -26.73 16 13 C 0.03 1.29 7.99 127.69 1.02 2.31 16 14 C 0.09 2.96 1.71 44.92 0.08 3.04 16 15 H 0.03 0.92 6.27 -2.39 -0.01 0.90 16 16 C -0.14 -4.52 8.80 71.98 0.63 -3.89 16 17 C -0.10 -2.83 2.97 -10.15 -0.03 -2.86 16 18 C 0.01 0.25 6.36 86.36 0.55 0.80 16 19 N -0.64 -14.48 8.53 -523.50 -4.47 -18.95 16 20 C 0.02 0.41 7.60 86.41 0.66 1.07 16 21 H 0.06 3.26 6.06 -2.39 -0.01 3.25 16 22 H 0.03 1.36 6.39 -2.38 -0.02 1.34 16 23 H 0.02 1.04 6.52 -2.39 -0.02 1.02 16 24 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 25 H 0.05 2.06 6.53 -2.39 -0.02 2.04 16 26 H 0.08 2.58 4.55 -2.39 -0.01 2.57 16 27 H 0.01 0.48 6.28 -2.38 -0.01 0.46 16 28 H 0.03 1.37 6.30 -2.39 -0.02 1.36 16 29 H 0.08 2.03 7.51 -2.39 -0.02 2.01 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 32 H 0.06 1.61 7.99 -2.39 -0.02 1.59 16 33 H 0.09 2.22 6.98 -2.39 -0.02 2.20 16 34 H 0.33 6.04 8.92 -89.70 -0.80 5.24 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.50 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -59.72 268.26 -1.72 -61.44 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.27 Total: 14.28 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 4.25 Total: -23.11 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -8.26 Total: -98.72 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -59.72 -1.72 -61.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.695 kcal (2) G-P(sol) polarization free energy of solvation -59.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds