Wall clock time and date at job start Mon Mar 30 2020 02:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.48453 * 2 1 4 4 C 1.53045 * 109.49060 * 239.93388 * 2 1 3 5 5 N 1.46957 * 109.36485 * 181.62983 * 4 2 1 6 6 C 1.46900 * 111.00456 * 183.18586 * 5 4 2 7 7 C 1.46963 * 110.88057 * 59.31858 * 5 4 2 8 8 C 1.53046 * 109.36158 * 300.68421 * 7 5 4 9 9 H 1.09001 * 109.49059 * 298.42730 * 8 7 5 10 10 C 1.53002 * 109.48637 * 178.36851 * 8 7 5 11 11 N 1.46953 * 109.48609 * 120.03964 * 2 1 3 12 12 C 1.46899 * 111.00356 * 303.15681 * 11 2 1 13 13 C 1.50699 * 109.47126 * 296.54944 * 12 11 2 14 14 H 1.07993 * 120.00005 * 355.52938 * 13 12 11 15 15 C 1.37880 * 119.99739 * 175.53603 * 13 12 11 16 16 N 1.31510 * 120.00145 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99910 * 179.72452 * 15 13 12 18 18 H 1.48497 * 109.47218 * 89.99181 * 17 15 13 19 19 H 1.48499 * 109.47075 * 209.99897 * 17 15 13 20 20 H 1.48501 * 109.46558 * 329.99689 * 17 15 13 21 21 H 1.08995 * 109.47594 * 299.95455 * 1 2 3 22 22 H 1.08997 * 109.46911 * 59.96091 * 1 2 3 23 23 H 1.09004 * 109.46436 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.49097 * 301.59509 * 4 2 1 25 25 H 1.08997 * 109.49155 * 61.66253 * 4 2 1 26 26 H 1.09001 * 109.46779 * 59.99873 * 6 5 4 27 27 H 1.08988 * 109.47503 * 179.97438 * 6 5 4 28 28 H 1.09006 * 109.47069 * 300.00580 * 6 5 4 29 29 H 1.08999 * 109.48481 * 60.64981 * 7 5 4 30 30 H 1.08993 * 109.49138 * 180.71006 * 7 5 4 31 31 H 1.09004 * 109.47147 * 298.48405 * 10 8 7 32 32 H 1.08998 * 109.47387 * 58.48569 * 10 8 7 33 33 H 1.09005 * 109.47284 * 178.48343 * 10 8 7 34 34 H 1.09009 * 109.47377 * 176.54592 * 12 11 2 35 35 H 1.08996 * 109.46786 * 56.54940 * 12 11 2 36 36 H 0.96998 * 120.00374 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7228 -1.2486 5 7 3.5097 -0.7554 -1.2262 6 6 4.0413 -1.3756 -2.4472 7 6 4.0001 -1.4490 -0.0269 8 6 3.4893 -0.7261 1.2217 9 1 3.8755 0.2931 1.2354 10 6 3.9644 -1.4692 2.4719 11 7 2.0203 -0.6935 1.1993 12 6 1.4888 -0.0734 2.4203 13 6 1.9950 1.3421 2.5261 14 1 2.7030 1.7179 1.8023 15 6 1.5543 2.1573 3.5470 16 7 0.6919 1.6999 4.4281 17 14 2.1877 3.9095 3.6826 18 1 1.3023 4.8171 2.9097 19 1 2.1973 4.3233 5.1088 20 1 3.5670 3.9808 3.1372 21 1 -0.3634 0.5131 0.8903 22 1 -0.3633 0.5144 -0.8896 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6545 -1.7421 -1.2623 25 1 1.7023 -0.1934 -2.1393 26 1 3.7176 -0.8027 -3.3162 27 1 5.1303 -1.3865 -2.4047 28 1 3.6702 -2.3974 -2.5269 29 1 3.6361 -2.4764 -0.0268 30 1 5.0900 -1.4490 -0.0269 31 1 3.5551 -2.4795 2.4715 32 1 5.0533 -1.5183 2.4736 33 1 3.6232 -0.9393 3.3612 34 1 1.8175 -0.6428 3.2898 35 1 0.3996 -0.0677 2.3804 36 1 0.3816 2.2735 5.1461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687801196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:09 Heat of formation + Delta-G solvation = 7.302213 kcal Electronic energy + Delta-G solvation = -15316.447444 eV Core-core repulsion = 13028.451166 eV Total energy + Delta-G solvation = -2287.996278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.01580 -35.32230 -32.83801 -32.43326 -28.97285 -26.97698 -26.11494 -25.76111 -23.07208 -20.96436 -20.47729 -18.78141 -16.07611 -15.37043 -15.24208 -14.81615 -14.51188 -14.05842 -13.68864 -12.75164 -12.58641 -12.10877 -11.96696 -11.93908 -11.67819 -11.40032 -11.26883 -11.03622 -10.78206 -10.67786 -10.51188 -10.08437 -10.00738 -9.78320 -9.72743 -9.26619 -8.35507 -8.00033 -7.08105 -5.97710 -4.05884 3.30383 3.37283 3.41327 4.29738 4.45102 4.97276 5.31877 5.33566 5.41911 5.62703 5.64286 5.85669 5.92863 5.95606 5.98432 6.01506 6.22172 6.23596 6.29152 6.31398 6.41410 6.67830 6.90458 6.94252 7.00069 7.08430 7.30065 7.41023 7.47394 7.62911 7.97687 8.16563 8.36792 8.40375 9.05301 9.60582 11.06820 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034348 B = 0.009958 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.997048 B = 2811.188887 C = 2934.145077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.090 3.910 3 H 0.054 0.946 4 C 0.064 3.936 5 N -0.546 5.546 6 C 0.028 3.972 7 C 0.063 3.937 8 C 0.089 3.911 9 H 0.054 0.946 10 C -0.138 4.138 11 N -0.535 5.535 12 C 0.181 3.819 13 C -0.542 4.542 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.885 3.115 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -5.400 -9.227 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 H 0.072 0.928 4 C -0.065 4.065 5 N -0.270 5.270 6 C -0.121 4.121 7 C -0.065 4.065 8 C -0.020 4.020 9 H 0.072 0.928 10 C -0.196 4.196 11 N -0.261 5.261 12 C 0.056 3.944 13 C -0.581 4.581 14 H 0.075 0.925 15 C -0.137 4.137 16 N -0.532 5.532 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.915 -5.364 -9.067 11.239 hybrid contribution 0.334 1.089 0.131 1.147 sum 4.250 -4.275 -8.935 10.778 Atomic orbital electron populations 1.21780 0.94950 1.01152 1.01827 1.21378 0.94593 0.96688 0.89232 0.92832 1.22272 0.86484 0.99136 0.98576 1.62104 1.09256 1.53511 1.02111 1.22311 1.00085 0.96733 0.92976 1.22275 0.98638 0.95631 0.89947 1.21396 0.89766 0.98374 0.92469 0.92782 1.21761 0.98897 1.00175 0.98782 1.62708 1.06431 1.53195 1.03755 1.19862 0.96105 0.92028 0.86391 1.21754 1.26228 0.98448 1.11714 0.92508 1.24937 0.94939 0.98172 0.95695 1.69939 1.31636 1.36304 1.15280 0.86696 0.79410 0.85404 0.77138 1.20731 1.21266 1.19957 0.90738 0.93726 0.93242 0.94867 0.91498 0.91858 0.91875 0.96170 0.94879 0.91511 0.93206 0.93751 0.90842 0.95028 0.94362 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.87 37.16 0.33 -2.27 16 2 C 0.09 1.82 2.24 -67.66 -0.15 1.66 16 3 H 0.05 1.23 6.88 -51.93 -0.36 0.87 16 4 C 0.06 1.08 4.90 -3.77 -0.02 1.06 16 5 N -0.55 -9.11 4.97 -242.76 -1.21 -10.32 16 6 C 0.03 0.36 9.60 60.06 0.58 0.93 16 7 C 0.06 1.07 4.90 -3.77 -0.02 1.06 16 8 C 0.09 1.79 2.20 -67.66 -0.15 1.64 16 9 H 0.05 1.24 6.52 -51.93 -0.34 0.90 16 10 C -0.14 -2.57 8.81 37.16 0.33 -2.24 16 11 N -0.54 -11.61 4.55 -219.99 -1.00 -12.61 16 12 C 0.18 4.60 4.31 -4.98 -0.02 4.58 16 13 C -0.54 -14.79 7.67 -34.44 -0.26 -15.05 16 14 H 0.06 1.58 5.81 -52.49 -0.31 1.28 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.07 1.60 6.28 -51.93 -0.33 1.27 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.74 8.13 -51.94 -0.42 0.32 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.55 6.44 -51.93 -0.33 1.22 16 34 H 0.03 0.85 6.27 -51.92 -0.33 0.53 16 35 H 0.04 1.04 6.06 -51.93 -0.31 0.72 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 274.73 15.07 4.14 4.14 Total: -1.00 -28.61 274.73 -7.92 -36.53 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.09 Total: -2.10 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 0.51 Total: -6.92 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -1.47 Total: -48.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.61 -7.92 -36.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.835 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds