Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.48453 * 2 1 4 4 C 1.53045 * 109.49060 * 239.93388 * 2 1 3 5 5 N 1.46957 * 109.36485 * 181.62983 * 4 2 1 6 6 C 1.46900 * 111.00456 * 183.18586 * 5 4 2 7 7 C 1.46963 * 110.88057 * 59.31858 * 5 4 2 8 8 C 1.53046 * 109.36158 * 300.68421 * 7 5 4 9 9 H 1.09001 * 109.49059 * 298.42730 * 8 7 5 10 10 C 1.53002 * 109.48637 * 178.36851 * 8 7 5 11 11 N 1.46953 * 109.48609 * 120.03964 * 2 1 3 12 12 C 1.46899 * 111.00356 * 303.15681 * 11 2 1 13 13 C 1.50699 * 109.47126 * 296.54944 * 12 11 2 14 14 H 1.07993 * 120.00005 * 355.52938 * 13 12 11 15 15 C 1.37880 * 119.99739 * 175.53603 * 13 12 11 16 16 N 1.31510 * 120.00145 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99910 * 179.72452 * 15 13 12 18 18 H 1.48497 * 109.47218 * 89.99181 * 17 15 13 19 19 H 1.48499 * 109.47075 * 209.99897 * 17 15 13 20 20 H 1.48501 * 109.46558 * 329.99689 * 17 15 13 21 21 H 1.08995 * 109.47594 * 299.95455 * 1 2 3 22 22 H 1.08997 * 109.46911 * 59.96091 * 1 2 3 23 23 H 1.09004 * 109.46436 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.49097 * 301.59509 * 4 2 1 25 25 H 1.08997 * 109.49155 * 61.66253 * 4 2 1 26 26 H 1.09001 * 109.46779 * 59.99873 * 6 5 4 27 27 H 1.08988 * 109.47503 * 179.97438 * 6 5 4 28 28 H 1.09006 * 109.47069 * 300.00580 * 6 5 4 29 29 H 1.08999 * 109.48481 * 60.64981 * 7 5 4 30 30 H 1.08993 * 109.49138 * 180.71006 * 7 5 4 31 31 H 1.09004 * 109.47147 * 298.48405 * 10 8 7 32 32 H 1.08998 * 109.47387 * 58.48569 * 10 8 7 33 33 H 1.09005 * 109.47284 * 178.48343 * 10 8 7 34 34 H 1.09009 * 109.47377 * 176.54592 * 12 11 2 35 35 H 1.08996 * 109.46786 * 56.54940 * 12 11 2 36 36 H 0.96998 * 120.00374 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7228 -1.2486 5 7 3.5097 -0.7554 -1.2262 6 6 4.0413 -1.3756 -2.4472 7 6 4.0001 -1.4490 -0.0269 8 6 3.4893 -0.7261 1.2217 9 1 3.8755 0.2931 1.2354 10 6 3.9644 -1.4692 2.4719 11 7 2.0203 -0.6935 1.1993 12 6 1.4888 -0.0734 2.4203 13 6 1.9950 1.3421 2.5261 14 1 2.7030 1.7179 1.8023 15 6 1.5543 2.1573 3.5470 16 7 0.6919 1.6999 4.4281 17 14 2.1877 3.9095 3.6826 18 1 1.3023 4.8171 2.9097 19 1 2.1973 4.3233 5.1088 20 1 3.5670 3.9808 3.1372 21 1 -0.3634 0.5131 0.8903 22 1 -0.3633 0.5144 -0.8896 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6545 -1.7421 -1.2623 25 1 1.7023 -0.1934 -2.1393 26 1 3.7176 -0.8027 -3.3162 27 1 5.1303 -1.3865 -2.4047 28 1 3.6702 -2.3974 -2.5269 29 1 3.6361 -2.4764 -0.0268 30 1 5.0900 -1.4490 -0.0269 31 1 3.5551 -2.4795 2.4715 32 1 5.0533 -1.5183 2.4736 33 1 3.6232 -0.9393 3.3612 34 1 1.8175 -0.6428 3.2898 35 1 0.3996 -0.0677 2.3804 36 1 0.3816 2.2735 5.1461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687801196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = -13.221668 kcal Electronic energy + Delta-G solvation = -15317.337426 eV Core-core repulsion = 13028.451166 eV Total energy + Delta-G solvation = -2288.886260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55386 -36.85320 -34.50333 -34.37440 -30.68035 -28.47122 -27.53890 -27.51692 -24.82903 -22.48252 -22.03727 -20.50680 -18.15037 -17.00926 -16.82628 -16.28067 -16.25886 -15.42675 -15.22698 -14.61979 -14.09903 -13.84866 -13.37287 -13.23982 -13.18360 -13.00688 -12.96129 -12.61169 -12.52147 -12.23866 -12.21540 -11.97361 -11.76134 -11.62715 -11.43421 -10.98996 -10.52815 -9.25709 -8.94804 -8.11385 -6.29227 1.35119 1.36055 1.46364 2.38462 3.06048 3.12693 3.32755 4.00749 4.08753 4.20504 4.46293 4.46849 4.51562 4.65208 4.65829 4.76306 4.82683 4.82955 4.86589 4.88145 5.03460 5.12409 5.30264 5.32136 5.36298 5.41262 5.46098 5.48398 5.83129 6.11262 6.12116 6.18838 6.39606 6.64521 6.92399 7.41015 8.90031 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034348 B = 0.009958 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.997048 B = 2811.188887 C = 2934.145077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.087 3.913 3 H 0.020 0.980 4 C 0.073 3.927 5 N -0.565 5.565 6 C 0.029 3.971 7 C 0.073 3.927 8 C 0.086 3.914 9 H 0.020 0.980 10 C -0.131 4.131 11 N -0.534 5.534 12 C 0.198 3.802 13 C -0.544 4.544 14 H 0.047 0.953 15 C 0.014 3.986 16 N -0.925 5.925 17 Si 0.949 3.051 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.272 1.272 21 H 0.037 0.963 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.009 0.991 35 H 0.015 0.985 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -5.770 -11.073 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.038 0.962 4 C -0.055 4.055 5 N -0.290 5.290 6 C -0.118 4.118 7 C -0.055 4.055 8 C -0.024 4.024 9 H 0.038 0.962 10 C -0.189 4.189 11 N -0.259 5.259 12 C 0.071 3.929 13 C -0.583 4.583 14 H 0.065 0.935 15 C -0.185 4.185 16 N -0.565 5.565 17 Si 0.775 3.225 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.197 1.197 21 H 0.056 0.944 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.033 0.967 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.992 -5.742 -10.936 13.322 hybrid contribution 0.014 1.177 0.674 1.357 sum 5.006 -4.565 -10.262 12.296 Atomic orbital electron populations 1.21694 0.94171 1.01686 1.01384 1.21471 0.95379 0.95235 0.90152 0.96241 1.22144 0.87064 0.99095 0.97179 1.62088 1.08918 1.54568 1.03380 1.22378 1.00860 0.97171 0.91431 1.22150 0.99749 0.95119 0.88506 1.21491 0.88442 0.97289 0.95136 0.96181 1.21681 1.00760 0.99836 0.96595 1.62697 1.07721 1.52508 1.02942 1.19490 0.94622 0.91200 0.87570 1.21896 1.25692 0.99419 1.11292 0.93476 1.25705 0.95201 1.02154 0.95444 1.70048 1.32782 1.37785 1.15902 0.85694 0.78832 0.80665 0.77339 1.20075 1.20576 1.19680 0.94410 0.90878 0.92146 0.94262 0.89357 0.90522 0.90499 0.95190 0.94272 0.89350 0.92212 0.90825 0.94358 0.97256 0.96671 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 8.87 71.98 0.64 -4.26 16 2 C 0.09 3.48 2.24 44.92 0.10 3.58 16 3 H 0.02 0.91 6.88 -2.38 -0.02 0.90 16 4 C 0.07 2.32 4.90 86.31 0.42 2.74 16 5 N -0.57 -17.34 4.97 -921.95 -4.58 -21.92 16 6 C 0.03 0.64 9.60 127.69 1.23 1.87 16 7 C 0.07 2.30 4.90 86.31 0.42 2.73 16 8 C 0.09 3.41 2.20 44.92 0.10 3.51 16 9 H 0.02 0.94 6.52 -2.39 -0.02 0.92 16 10 C -0.13 -4.83 8.81 71.98 0.63 -4.19 16 11 N -0.53 -23.45 4.55 -849.93 -3.87 -27.31 16 12 C 0.20 10.45 4.31 85.56 0.37 10.82 16 13 C -0.54 -30.68 7.67 25.60 0.20 -30.48 16 14 H 0.05 2.71 5.81 -2.91 -0.02 2.70 16 15 C 0.01 0.80 5.46 84.66 0.46 1.26 16 16 N -0.92 -55.44 13.29 21.45 0.28 -55.16 16 17 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H 0.04 1.66 6.28 -2.39 -0.02 1.65 16 22 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 2.41 8.13 -2.39 -0.02 2.40 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.04 1.66 6.44 -2.38 -0.02 1.64 16 34 H 0.01 0.53 6.27 -2.38 -0.01 0.52 16 35 H 0.02 0.87 6.06 -2.39 -0.01 0.86 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -62.85 274.73 -0.53 -63.38 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.03 Total: 6.37 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.57 Total: -12.42 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -8.16 Total: -104.39 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -62.85 -0.53 -63.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.162 kcal (2) G-P(sol) polarization free energy of solvation -62.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds