Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48967 * 2 1 4 4 C 1.53054 * 109.48837 * 239.95955 * 2 1 3 5 5 N 1.46953 * 109.36526 * 181.62625 * 4 2 1 6 6 C 1.46906 * 110.99798 * 183.18823 * 5 4 2 7 7 C 1.46957 * 110.87837 * 59.32417 * 5 4 2 8 8 C 1.53055 * 109.36235 * 300.67367 * 7 5 4 9 9 H 1.08997 * 109.48832 * 178.36723 * 8 7 5 10 10 C 1.52992 * 109.49179 * 298.43572 * 8 7 5 11 11 N 1.46953 * 109.36200 * 58.40662 * 8 7 5 12 12 C 1.46896 * 110.99997 * 176.81348 * 11 8 7 13 13 C 1.50709 * 109.46951 * 293.79438 * 12 11 8 14 14 H 1.08000 * 119.99550 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00217 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00187 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00261 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46976 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47262 * 120.00089 * 17 15 13 20 20 H 1.48504 * 109.47397 * 240.00359 * 17 15 13 21 21 H 1.08998 * 109.46862 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46573 * 300.04057 * 1 2 3 23 23 H 1.08994 * 109.47405 * 60.04079 * 1 2 3 24 24 H 1.09007 * 109.48657 * 61.65815 * 4 2 1 25 25 H 1.09000 * 109.48942 * 301.59654 * 4 2 1 26 26 H 1.08992 * 109.47459 * 60.00098 * 6 5 4 27 27 H 1.09004 * 109.47040 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47033 * 300.00201 * 6 5 4 29 29 H 1.09000 * 109.49241 * 60.64217 * 7 5 4 30 30 H 1.08998 * 109.48855 * 180.71087 * 7 5 4 31 31 H 1.09001 * 109.47356 * 179.89138 * 10 8 7 32 32 H 1.09003 * 109.47403 * 299.89670 * 10 8 7 33 33 H 1.09002 * 109.47086 * 59.89078 * 10 8 7 34 34 H 1.08997 * 109.47387 * 53.79590 * 12 11 8 35 35 H 1.09001 * 109.47293 * 173.79774 * 12 11 8 36 36 H 0.96992 * 120.00646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5096 -0.7549 -1.2268 6 6 4.0410 -1.3745 -2.4482 7 6 3.9999 -1.4490 -0.0279 8 6 3.4894 -0.7267 1.2212 9 1 3.8279 -1.2565 2.1115 10 6 4.0315 0.7039 1.2410 11 7 2.0204 -0.6941 1.1989 12 6 1.4890 -0.0744 2.4202 13 6 1.8070 -0.9483 3.6061 14 1 2.3492 -1.8718 3.4664 15 6 1.4057 -0.5688 4.8694 16 7 0.7450 0.5556 5.0395 17 14 1.7992 -1.6523 6.3393 18 1 2.5448 -2.8530 5.8836 19 1 2.6304 -0.8917 7.3066 20 1 0.5357 -2.0735 6.9962 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5145 0.8897 23 1 -0.3634 0.5132 -0.8903 24 1 1.7020 -0.1924 -2.1395 25 1 1.6544 -1.7415 -1.2632 26 1 3.7173 -0.8013 -3.3168 27 1 5.1301 -1.3862 -2.4054 28 1 3.6699 -2.3963 -2.5283 29 1 3.6360 -2.4765 -0.0280 30 1 5.0899 -1.4490 -0.0279 31 1 3.6662 1.2186 2.1296 32 1 5.1211 0.6794 1.2574 33 1 3.6935 1.2329 0.3499 34 1 1.9453 0.9058 2.5584 35 1 0.4085 0.0372 2.3304 36 1 0.4630 0.8228 5.9282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687801197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = 11.190351 kcal Electronic energy + Delta-G solvation = -15241.598690 eV Core-core repulsion = 12953.771014 eV Total energy + Delta-G solvation = -2287.827676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.24785 -35.27942 -32.72293 -32.41696 -29.09229 -26.77380 -26.32959 -25.91986 -23.05286 -21.47732 -20.87042 -17.92776 -16.23839 -15.56028 -15.02585 -14.76981 -14.50355 -14.39267 -13.30990 -13.26534 -12.62812 -12.37982 -12.08229 -11.84319 -11.70435 -11.49560 -11.16113 -11.08012 -10.88959 -10.70480 -10.61618 -10.39824 -10.09483 -9.84610 -9.44374 -9.06670 -8.37657 -8.02959 -7.08436 -5.98891 -3.99019 3.32528 3.40050 3.44714 4.25447 4.45312 4.91896 5.28325 5.34541 5.36705 5.55831 5.60023 5.76916 5.81102 5.87176 5.92781 5.96583 6.09866 6.14360 6.19865 6.31649 6.37476 6.62449 6.63577 6.78891 6.82467 7.02787 7.30115 7.33441 7.47093 7.52531 7.86166 8.18110 8.30879 8.63684 9.08812 9.64565 11.11955 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.009047 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.009240 B = 3094.169589 C = 3403.042551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.042 0.958 4 C 0.066 3.934 5 N -0.543 5.543 6 C 0.027 3.973 7 C 0.062 3.938 8 C 0.091 3.909 9 H 0.092 0.908 10 C -0.172 4.172 11 N -0.528 5.528 12 C 0.185 3.815 13 C -0.503 4.503 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.057 0.943 34 H -0.003 1.003 35 H 0.037 0.963 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -1.885 -11.395 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 H 0.060 0.940 4 C -0.062 4.062 5 N -0.267 5.267 6 C -0.122 4.122 7 C -0.066 4.066 8 C -0.019 4.019 9 H 0.110 0.890 10 C -0.231 4.231 11 N -0.253 5.253 12 C 0.060 3.940 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.015 0.985 35 H 0.055 0.945 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.107 -1.789 -11.258 12.116 hybrid contribution 0.177 -0.513 0.881 1.035 sum 4.284 -2.301 -10.376 11.459 Atomic orbital electron populations 1.21857 0.94801 1.02140 1.01360 1.21563 0.94752 0.96057 0.90781 0.94035 1.22196 0.86759 0.99368 0.97906 1.62138 1.08957 1.53453 1.02161 1.22316 1.00138 0.96842 0.92887 1.22258 0.98741 0.95728 0.89888 1.21576 0.88910 0.95072 0.96294 0.89048 1.22263 0.99805 0.98989 1.02008 1.62506 1.06320 1.53649 1.02826 1.19862 0.95691 0.93329 0.85079 1.21205 1.35381 1.06609 0.90931 0.92072 1.24965 0.95451 0.95270 0.98935 1.69964 1.39167 1.22284 1.22497 0.86495 0.78002 0.80598 0.82642 1.19747 1.21181 1.21099 0.92365 0.91328 0.93486 0.91478 0.94493 0.91892 0.91824 0.96074 0.94579 0.91318 0.92059 0.93810 0.92387 0.98481 0.94544 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.89 37.16 0.33 -2.18 16 2 C 0.08 1.45 2.18 -67.65 -0.15 1.31 16 3 H 0.04 0.82 6.35 -51.93 -0.33 0.49 16 4 C 0.07 1.06 4.90 -3.77 -0.02 1.04 16 5 N -0.54 -8.46 4.28 -242.75 -1.04 -9.50 16 6 C 0.03 0.33 9.60 60.07 0.58 0.90 16 7 C 0.06 1.03 5.05 -3.76 -0.02 1.01 16 8 C 0.09 1.80 2.79 -67.66 -0.19 1.61 16 9 H 0.09 1.98 6.79 -51.93 -0.35 1.63 16 10 C -0.17 -3.28 8.38 37.15 0.31 -2.97 16 11 N -0.53 -11.48 4.47 -220.00 -0.98 -12.47 16 12 C 0.19 4.78 4.30 -4.97 -0.02 4.76 16 13 C -0.50 -14.08 8.47 -34.44 -0.29 -14.37 16 14 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 22 H 0.07 1.33 6.15 -51.93 -0.32 1.02 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.06 1.32 6.35 -51.93 -0.33 0.99 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.09 5.94 -51.93 -0.31 0.78 16 34 H 0.00 -0.07 6.10 -51.93 -0.32 -0.39 16 35 H 0.04 1.00 5.73 -51.93 -0.30 0.70 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 273.18 15.07 4.12 4.12 Total: -1.00 -29.29 273.18 -7.75 -37.04 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.99 Total: -2.50 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 0.43 Total: -7.43 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -1.29 Total: -47.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.29 -7.75 -37.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.226 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds