Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48967 * 2 1 4 4 C 1.53054 * 109.48837 * 239.95955 * 2 1 3 5 5 N 1.46953 * 109.36526 * 181.62625 * 4 2 1 6 6 C 1.46906 * 110.99798 * 183.18823 * 5 4 2 7 7 C 1.46957 * 110.87837 * 59.32417 * 5 4 2 8 8 C 1.53055 * 109.36235 * 300.67367 * 7 5 4 9 9 H 1.08997 * 109.48832 * 178.36723 * 8 7 5 10 10 C 1.52992 * 109.49179 * 298.43572 * 8 7 5 11 11 N 1.46953 * 109.36200 * 58.40662 * 8 7 5 12 12 C 1.46896 * 110.99997 * 176.81348 * 11 8 7 13 13 C 1.50709 * 109.46951 * 293.79438 * 12 11 8 14 14 H 1.08000 * 119.99550 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00217 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00187 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00261 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46976 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47262 * 120.00089 * 17 15 13 20 20 H 1.48504 * 109.47397 * 240.00359 * 17 15 13 21 21 H 1.08998 * 109.46862 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46573 * 300.04057 * 1 2 3 23 23 H 1.08994 * 109.47405 * 60.04079 * 1 2 3 24 24 H 1.09007 * 109.48657 * 61.65815 * 4 2 1 25 25 H 1.09000 * 109.48942 * 301.59654 * 4 2 1 26 26 H 1.08992 * 109.47459 * 60.00098 * 6 5 4 27 27 H 1.09004 * 109.47040 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47033 * 300.00201 * 6 5 4 29 29 H 1.09000 * 109.49241 * 60.64217 * 7 5 4 30 30 H 1.08998 * 109.48855 * 180.71087 * 7 5 4 31 31 H 1.09001 * 109.47356 * 179.89138 * 10 8 7 32 32 H 1.09003 * 109.47403 * 299.89670 * 10 8 7 33 33 H 1.09002 * 109.47086 * 59.89078 * 10 8 7 34 34 H 1.08997 * 109.47387 * 53.79590 * 12 11 8 35 35 H 1.09001 * 109.47293 * 173.79774 * 12 11 8 36 36 H 0.96992 * 120.00646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5096 -0.7549 -1.2268 6 6 4.0410 -1.3745 -2.4482 7 6 3.9999 -1.4490 -0.0279 8 6 3.4894 -0.7267 1.2212 9 1 3.8279 -1.2565 2.1115 10 6 4.0315 0.7039 1.2410 11 7 2.0204 -0.6941 1.1989 12 6 1.4890 -0.0744 2.4202 13 6 1.8070 -0.9483 3.6061 14 1 2.3492 -1.8718 3.4664 15 6 1.4057 -0.5688 4.8694 16 7 0.7450 0.5556 5.0395 17 14 1.7992 -1.6523 6.3393 18 1 2.5448 -2.8530 5.8836 19 1 2.6304 -0.8917 7.3066 20 1 0.5357 -2.0735 6.9962 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5145 0.8897 23 1 -0.3634 0.5132 -0.8903 24 1 1.7020 -0.1924 -2.1395 25 1 1.6544 -1.7415 -1.2632 26 1 3.7173 -0.8013 -3.3168 27 1 5.1301 -1.3862 -2.4054 28 1 3.6699 -2.3963 -2.5283 29 1 3.6360 -2.4765 -0.0280 30 1 5.0899 -1.4490 -0.0279 31 1 3.6662 1.2186 2.1296 32 1 5.1211 0.6794 1.2574 33 1 3.6935 1.2329 0.3499 34 1 1.9453 0.9058 2.5584 35 1 0.4085 0.0372 2.3304 36 1 0.4630 0.8228 5.9282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687801197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = -9.430662 kcal Electronic energy + Delta-G solvation = -15242.492884 eV Core-core repulsion = 12953.771014 eV Total energy + Delta-G solvation = -2288.721870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73769 -36.75942 -34.65512 -34.05523 -30.82534 -28.22570 -27.72527 -27.67453 -24.69375 -23.10990 -22.37433 -19.47458 -18.37382 -17.09414 -16.63383 -16.36455 -16.02363 -15.81179 -14.93645 -14.81769 -14.29424 -13.87170 -13.62981 -13.28241 -13.16152 -12.96575 -12.81644 -12.65688 -12.46172 -12.36595 -12.28940 -12.10194 -11.86788 -11.50300 -11.12916 -11.03334 -10.54627 -9.25693 -8.85731 -8.17662 -6.26182 1.39737 1.40271 1.53536 2.40952 3.05855 3.14377 3.30691 3.95238 4.08020 4.15887 4.31813 4.42786 4.54254 4.61011 4.66694 4.70563 4.75106 4.78715 4.84003 4.95109 5.03355 5.06177 5.14715 5.20322 5.32156 5.32486 5.42803 5.55906 5.69514 6.07346 6.13798 6.18154 6.47877 6.74700 6.90857 7.42651 8.93337 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.009047 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.009240 B = 3094.169589 C = 3403.042551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 H 0.030 0.970 4 C 0.074 3.926 5 N -0.552 5.552 6 C 0.028 3.972 7 C 0.073 3.927 8 C 0.085 3.915 9 H 0.066 0.934 10 C -0.158 4.158 11 N -0.536 5.536 12 C 0.203 3.797 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.055 0.945 22 H 0.037 0.963 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.092 0.908 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.061 0.939 34 H -0.032 1.032 35 H 0.014 0.986 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -2.895 -12.868 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 H 0.047 0.953 4 C -0.054 4.054 5 N -0.276 5.276 6 C -0.120 4.120 7 C -0.056 4.056 8 C -0.024 4.024 9 H 0.084 0.916 10 C -0.216 4.216 11 N -0.261 5.261 12 C 0.077 3.923 13 C -0.556 4.556 14 H 0.075 0.925 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.113 0.887 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.080 0.920 34 H -0.014 1.014 35 H 0.032 0.968 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.133 -2.808 -12.760 14.037 hybrid contribution -0.135 -0.165 1.281 1.298 sum 4.998 -2.972 -11.479 12.868 Atomic orbital electron populations 1.21796 0.94131 1.02017 1.01594 1.21713 0.95466 0.95591 0.90801 0.95255 1.22117 0.87274 0.98997 0.97008 1.62136 1.08560 1.53949 1.02983 1.22396 1.00939 0.97089 0.91566 1.22109 0.99906 0.94733 0.88804 1.21620 0.87780 0.95580 0.97436 0.91559 1.22108 1.01094 0.98130 1.00314 1.62440 1.07734 1.53552 1.02359 1.19468 0.94156 0.91883 0.86809 1.21491 1.35289 1.06670 0.92115 0.92460 1.25850 0.95161 0.96603 1.01981 1.70089 1.40134 1.23973 1.23354 0.85402 0.77994 0.78863 0.78768 1.18892 1.20497 1.20461 0.92582 0.94363 0.89930 0.88698 0.94846 0.90170 0.90424 0.95642 0.95135 0.88994 0.95681 0.91464 0.91997 1.01433 0.96804 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.89 71.98 0.64 -4.13 16 2 C 0.07 2.71 2.18 44.92 0.10 2.80 16 3 H 0.03 1.16 6.35 -2.39 -0.02 1.15 16 4 C 0.07 2.19 4.90 86.31 0.42 2.61 16 5 N -0.55 -15.57 4.28 -921.91 -3.95 -19.52 16 6 C 0.03 0.57 9.60 127.69 1.23 1.79 16 7 C 0.07 2.28 5.05 86.31 0.44 2.71 16 8 C 0.08 3.38 2.79 44.92 0.13 3.50 16 9 H 0.07 2.93 6.79 -2.39 -0.02 2.92 16 10 C -0.16 -6.05 8.38 71.98 0.60 -5.44 16 11 N -0.54 -23.75 4.47 -849.94 -3.80 -27.54 16 12 C 0.20 10.97 4.30 85.56 0.37 11.34 16 13 C -0.52 -29.85 8.47 25.60 0.22 -29.63 16 14 H 0.06 3.28 7.13 -2.91 -0.02 3.26 16 15 C 0.00 0.09 5.46 84.65 0.46 0.56 16 16 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 17 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 18 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.04 1.54 6.15 -2.39 -0.01 1.52 16 23 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 24 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.40 8.13 -2.38 -0.02 1.38 16 28 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 2.45 8.13 -2.39 -0.02 2.44 16 31 H 0.02 1.11 6.35 -2.39 -0.02 1.09 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.30 5.94 -2.39 -0.01 2.29 16 34 H -0.03 -1.88 6.10 -2.39 -0.01 -1.90 16 35 H 0.01 0.81 5.73 -2.39 -0.01 0.80 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -64.34 273.18 0.20 -64.14 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.03 Total: 6.45 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.60 Total: -13.89 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -7.46 Total: -103.84 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.34 0.20 -64.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.714 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds