Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.48769 * 2 1 4 4 C 1.53052 * 109.49180 * 120.06335 * 2 1 3 5 5 N 1.46958 * 109.36013 * 61.56658 * 4 2 1 6 6 C 1.46901 * 110.99884 * 183.18826 * 5 4 2 7 7 C 1.46955 * 110.88322 * 59.32072 * 5 4 2 8 8 C 1.53043 * 109.36431 * 300.68052 * 7 5 4 9 9 H 1.09005 * 109.50835 * 298.42016 * 8 7 5 10 10 C 1.53005 * 109.49156 * 178.36548 * 8 7 5 11 11 N 1.46955 * 109.36704 * 58.40022 * 8 7 5 12 12 C 1.46901 * 111.00199 * 176.81316 * 11 8 7 13 13 C 1.50700 * 109.47085 * 189.31122 * 12 11 8 14 14 H 1.07995 * 120.00174 * 4.95875 * 13 12 11 15 15 C 1.37881 * 119.99606 * 184.95689 * 13 12 11 16 16 N 1.31516 * 119.99749 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00459 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47217 * 89.99770 * 17 15 13 19 19 H 1.48497 * 109.47008 * 210.00292 * 17 15 13 20 20 H 1.48499 * 109.46940 * 330.00099 * 17 15 13 21 21 H 1.08998 * 109.46815 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46891 * 300.04098 * 1 2 3 23 23 H 1.09002 * 109.47136 * 60.04273 * 1 2 3 24 24 H 1.08992 * 109.49046 * 181.53398 * 4 2 1 25 25 H 1.08993 * 109.48831 * 301.60088 * 4 2 1 26 26 H 1.08996 * 109.47145 * 296.20275 * 6 5 4 27 27 H 1.09003 * 109.47126 * 56.20088 * 6 5 4 28 28 H 1.09002 * 109.47479 * 176.19735 * 6 5 4 29 29 H 1.08994 * 109.48915 * 180.70871 * 7 5 4 30 30 H 1.09000 * 109.48669 * 60.64461 * 7 5 4 31 31 H 1.09001 * 109.47202 * 293.34577 * 10 8 7 32 32 H 1.08999 * 109.46805 * 53.34185 * 10 8 7 33 33 H 1.08991 * 109.47187 * 173.33962 * 10 8 7 34 34 H 1.08995 * 109.47035 * 309.31497 * 12 11 8 35 35 H 1.09007 * 109.47086 * 69.30950 * 12 11 8 36 36 H 0.96994 * 120.00415 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7228 1.2487 5 7 1.5810 -2.1184 1.2260 6 6 1.9879 -2.8266 2.4471 7 6 2.0712 -2.8120 0.0268 8 6 1.5606 -2.0892 -1.2218 9 1 0.4709 -2.1129 -1.2361 10 6 2.1027 -2.7850 -2.4720 11 7 2.0204 -0.6936 -1.1992 12 6 1.6135 0.0146 -2.4203 13 6 2.2895 1.3605 -2.4692 14 1 3.0156 1.6279 -1.7158 15 6 1.9810 2.2507 -3.4760 16 7 2.5713 3.4251 -3.5191 17 14 0.7246 1.7886 -4.7789 18 1 -0.6282 2.2077 -4.3327 19 1 1.0594 2.4723 -6.0539 20 1 0.7441 0.3182 -4.9858 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5145 0.8896 23 1 -0.3633 0.5132 -0.8904 24 1 3.1303 -0.6990 1.2626 25 1 1.6545 -0.2271 2.1393 26 1 3.0757 -2.8768 2.4926 27 1 1.6120 -2.2921 3.3195 28 1 1.5777 -3.8365 2.4352 29 1 1.7073 -3.8394 0.0267 30 1 3.1612 -2.8120 0.0268 31 1 3.1843 -2.6576 -2.5186 32 1 1.8636 -3.8475 -2.4290 33 1 1.6465 -2.3456 -3.3590 34 1 1.9039 -0.5699 -3.2932 35 1 0.5320 0.1510 -2.4179 36 1 2.3546 4.0512 -4.2275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687801198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = 14.453060 kcal Electronic energy + Delta-G solvation = -15295.520094 eV Core-core repulsion = 13007.833900 eV Total energy + Delta-G solvation = -2287.686194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35803 -35.38938 -32.79618 -32.39293 -29.50391 -26.89566 -26.40708 -26.28427 -22.92223 -21.43080 -20.80133 -17.98777 -16.72989 -15.58183 -15.18426 -14.86727 -14.57529 -14.19174 -13.55522 -13.24774 -12.64967 -12.53263 -12.32366 -12.06590 -11.81174 -11.59016 -11.36269 -11.21089 -10.97806 -10.69073 -10.64775 -10.49390 -10.01487 -9.76764 -9.64937 -9.16953 -8.53335 -8.08534 -7.25026 -6.02696 -3.98771 3.29352 3.37228 3.39456 4.20219 4.44175 4.73906 5.21325 5.27717 5.29500 5.47949 5.55776 5.66166 5.74190 5.80286 5.87565 5.90004 5.99395 6.04394 6.12791 6.21571 6.28888 6.46251 6.54261 6.65107 6.66272 6.89461 7.01559 7.11187 7.27802 7.34251 7.67745 7.99301 8.14934 8.71124 9.06458 9.60042 11.10650 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042465 B = 0.009675 C = 0.008824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.203767 B = 2893.313058 C = 3172.561084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.099 0.901 4 C 0.062 3.938 5 N -0.543 5.543 6 C 0.027 3.973 7 C 0.066 3.934 8 C 0.075 3.925 9 H 0.043 0.957 10 C -0.143 4.143 11 N -0.518 5.518 12 C 0.157 3.843 13 C -0.505 4.505 14 H 0.079 0.921 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.873 3.127 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.268 1.268 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.032 0.968 35 H -0.011 1.011 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 -11.655 7.563 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 H 0.117 0.883 4 C -0.066 4.066 5 N -0.268 5.268 6 C -0.122 4.122 7 C -0.062 4.062 8 C -0.034 4.034 9 H 0.060 0.940 10 C -0.201 4.201 11 N -0.243 5.243 12 C 0.031 3.969 13 C -0.544 4.544 14 H 0.097 0.903 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.192 1.192 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.007 0.993 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.851 -11.488 7.454 13.988 hybrid contribution -0.671 -0.077 -0.750 1.009 sum -3.522 -11.566 6.704 13.824 Atomic orbital electron populations 1.22269 0.97992 1.01559 1.01290 1.21626 0.92789 0.98739 0.88748 0.88346 1.22252 0.97917 0.87959 0.98468 1.62146 1.59810 1.02801 1.02014 1.22315 0.98046 0.98941 0.92883 1.22170 0.97862 0.96666 0.89503 1.21620 0.97438 0.90710 0.93678 0.93955 1.21841 1.02233 0.98592 0.97464 1.62369 1.58726 0.99908 1.03284 1.20269 0.93811 0.94886 0.87951 1.21034 1.23917 0.97052 1.12363 0.90293 1.24891 0.96093 0.94823 0.97520 1.69891 1.43188 1.07321 1.33709 0.86888 0.82177 0.79058 0.81791 1.20389 1.21245 1.19248 0.92352 0.93415 0.92470 0.94358 0.91099 0.95975 0.91744 0.91894 0.91365 0.94313 0.91823 0.93184 0.92176 0.95045 0.99297 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 8.38 37.16 0.31 -2.86 16 2 C 0.09 1.76 2.79 -67.65 -0.19 1.57 16 3 H 0.10 2.18 6.84 -51.93 -0.36 1.82 16 4 C 0.06 1.02 5.05 -3.77 -0.02 1.00 16 5 N -0.54 -8.19 4.28 -242.77 -1.04 -9.23 16 6 C 0.03 0.32 9.60 60.07 0.58 0.89 16 7 C 0.07 1.01 4.90 -3.77 -0.02 1.00 16 8 C 0.07 1.32 2.18 -67.66 -0.15 1.18 16 9 H 0.04 0.78 6.35 -51.93 -0.33 0.45 16 10 C -0.14 -2.32 8.66 37.16 0.32 -2.00 16 11 N -0.52 -10.92 4.47 -219.99 -0.98 -11.91 16 12 C 0.16 3.80 3.34 -4.98 -0.02 3.78 16 13 C -0.51 -14.31 8.91 -34.44 -0.31 -14.61 16 14 H 0.08 2.44 7.52 -52.49 -0.39 2.05 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 17 Si 0.87 21.67 27.37 -169.99 -4.65 17.02 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.39 6.69 56.52 0.38 -6.01 16 21 H 0.06 1.04 5.94 -51.93 -0.31 0.73 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.16 6.36 -51.93 -0.33 0.83 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 26 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 34 H 0.03 0.77 5.31 -51.93 -0.28 0.50 16 35 H -0.01 -0.26 5.28 -51.92 -0.27 -0.53 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -29.89 270.15 -7.41 -37.30 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.99 Total: -2.17 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 0.42 Total: -8.19 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -1.25 Total: -48.03 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.65 Total: 17.02 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.89 -7.41 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.756 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds