Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47001 * 2 1 4 4 C 1.50696 * 109.46918 * 240.00047 * 2 1 3 5 5 H 1.08001 * 120.00299 * 239.99655 * 4 2 1 6 6 C 1.37872 * 120.00228 * 59.99955 * 4 2 1 7 7 N 1.31518 * 120.00276 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47198 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47222 * 120.00079 * 8 6 4 11 11 H 1.48502 * 109.47476 * 240.00157 * 8 6 4 12 12 N 1.46901 * 109.47361 * 120.00006 * 2 1 3 13 13 C 1.46897 * 110.99849 * 58.95061 * 12 2 1 14 14 C 1.46903 * 111.00054 * 295.00141 * 12 2 1 15 15 C 1.52998 * 109.47064 * 190.00001 * 14 12 2 16 16 C 1.53509 * 114.16725 * 184.99732 * 15 14 12 17 17 N 1.47485 * 87.93255 * 220.13899 * 16 15 14 18 18 C 1.46901 * 110.99912 * 138.70680 * 17 16 15 19 19 C 1.47478 * 87.83366 * 27.01321 * 17 16 15 20 20 H 1.09003 * 109.47045 * 299.99654 * 1 2 3 21 21 H 1.08996 * 109.47390 * 60.00146 * 1 2 3 22 22 H 1.09001 * 109.47001 * 179.97438 * 1 2 3 23 23 H 0.96994 * 120.00861 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.47508 * 296.04862 * 13 12 2 25 25 H 1.09003 * 109.46898 * 56.05229 * 13 12 2 26 26 H 1.09008 * 109.46982 * 176.04438 * 13 12 2 27 27 H 1.08998 * 109.46972 * 69.99243 * 14 12 2 28 28 H 1.09007 * 109.46929 * 309.99773 * 14 12 2 29 29 H 1.08994 * 113.25635 * 317.94716 * 15 14 12 30 30 H 1.09003 * 113.47951 * 105.37227 * 16 15 14 31 31 H 1.09001 * 113.53817 * 334.91225 * 16 15 14 32 32 H 1.09002 * 109.47401 * 59.99977 * 18 17 16 33 33 H 1.09001 * 109.46874 * 299.99989 * 18 17 16 34 34 H 1.09004 * 109.46970 * 180.02562 * 18 17 16 35 35 H 1.08996 * 113.47930 * 87.75788 * 19 17 16 36 36 H 1.09000 * 113.47322 * 218.22147 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8164 11 1 3.1471 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6488 0.0391 2.4181 15 6 2.3790 -0.5662 3.6186 16 6 1.9768 0.0404 4.9701 17 7 3.3983 -0.0174 5.3587 18 6 3.7970 1.1991 6.0793 19 6 3.7360 0.0821 3.9265 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7080 1.1608 -3.4843 24 1 0.4420 -2.0731 1.3348 25 1 1.8168 -2.5950 0.3318 26 1 1.9618 -2.5868 2.1059 27 1 0.5723 -0.0345 2.5726 28 1 1.9298 1.0871 2.3125 29 1 2.3975 -1.6560 3.6063 30 1 1.3371 -0.6111 5.5655 31 1 1.5887 1.0561 4.8932 32 1 3.1923 1.3023 6.9804 33 1 3.6449 2.0674 5.4383 34 1 4.8497 1.1303 6.3537 35 1 3.8176 1.1088 3.5699 36 1 4.5873 -0.5342 3.6373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692680368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = 43.927780 kcal Electronic energy + Delta-G solvation = -14672.238695 eV Core-core repulsion = 12385.830620 eV Total energy + Delta-G solvation = -2286.408074 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00098 -36.93753 -32.88642 -30.96815 -28.56196 -26.84373 -25.75171 -25.13635 -24.31319 -21.80579 -19.42124 -19.06093 -16.19494 -15.74116 -15.30945 -14.94407 -14.70709 -14.08649 -13.74633 -13.23407 -12.79405 -12.57830 -12.46143 -11.71993 -11.40527 -11.25134 -11.16334 -10.96869 -10.76735 -10.63944 -10.51899 -10.31600 -10.03100 -9.98018 -9.70392 -8.89902 -8.76530 -8.37825 -7.09250 -5.99761 -4.03205 3.30893 3.38810 3.43534 4.18309 4.41287 4.60160 4.89772 5.11037 5.31304 5.34103 5.43915 5.53533 5.58916 5.76290 5.80721 5.90561 5.92907 6.09671 6.21179 6.30245 6.34143 6.46535 6.62867 6.70654 6.85171 6.94027 7.13384 7.15993 7.51983 7.73832 7.85937 8.14878 8.41295 8.63308 9.03435 9.61949 11.07516 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054944 B = 0.006566 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.487353 B = 4263.397023 C = 4330.004397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.037 0.963 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.533 5.533 13 C 0.033 3.967 14 C 0.065 3.935 15 C -0.105 4.105 16 C -0.002 4.002 17 N -0.484 5.484 18 C -0.011 4.011 19 C 0.011 3.989 20 H 0.006 0.994 21 H 0.087 0.913 22 H 0.030 0.970 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -0.496 11.904 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.115 4.115 14 C -0.064 4.064 15 C -0.124 4.124 16 C -0.131 4.131 17 N -0.206 5.206 18 C -0.161 4.161 19 C -0.118 4.118 20 H 0.025 0.975 21 H 0.106 0.894 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.264 -0.918 12.177 12.420 hybrid contribution -0.923 0.502 -1.212 1.604 sum 1.341 -0.417 10.965 11.055 Atomic orbital electron populations 1.22397 1.00949 0.99335 1.00418 1.19313 0.89691 0.94514 0.86171 0.94473 1.21173 1.30349 1.12407 0.89684 0.91848 1.24935 0.95274 0.95147 0.99027 1.69896 1.37215 1.23178 1.23242 0.86474 0.78517 0.79677 0.82935 1.19729 1.21220 1.21092 1.62321 1.59421 1.01934 1.01962 1.22265 0.96672 0.91352 1.01257 1.21984 0.96484 0.97707 0.90222 1.22779 0.95478 1.01096 0.93085 1.23891 0.91944 1.00619 0.96693 1.68860 1.07038 1.33758 1.10902 1.22869 1.01913 0.92004 0.99290 1.23877 0.99403 1.00632 0.87871 0.97465 0.89441 0.95114 0.93112 0.96685 0.90805 0.93807 0.95328 0.91771 0.88021 0.90220 0.91541 0.91763 0.94630 0.91356 0.91297 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.27 37.16 0.31 -3.85 16 2 C 0.21 5.25 2.34 -68.87 -0.16 5.09 16 3 H 0.04 1.03 8.03 -51.93 -0.42 0.61 16 4 C -0.50 -13.57 7.88 -34.44 -0.27 -13.84 16 5 H 0.06 1.74 6.77 -52.49 -0.36 1.38 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.53 -11.34 4.74 -236.28 -1.12 -12.46 16 13 C 0.03 0.65 8.60 60.06 0.52 1.16 16 14 C 0.07 1.16 4.31 -3.82 -0.02 1.15 16 15 C -0.11 -1.58 4.03 -90.09 -0.36 -1.95 16 16 C 0.00 -0.03 7.30 -7.55 -0.06 -0.08 16 17 N -0.48 -6.54 6.73 -252.98 -1.70 -8.24 16 18 C -0.01 -0.13 9.69 60.07 0.58 0.45 16 19 C 0.01 0.15 7.28 -7.55 -0.05 0.10 16 20 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 21 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 22 H 0.03 0.72 6.48 -51.93 -0.34 0.38 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.01 0.29 6.51 -51.93 -0.34 -0.05 16 25 H 0.07 1.56 6.41 -51.93 -0.33 1.23 16 26 H 0.04 0.74 6.28 -51.92 -0.33 0.42 16 27 H 0.03 0.52 6.94 -51.93 -0.36 0.16 16 28 H 0.06 1.17 7.68 -51.92 -0.40 0.77 16 29 H 0.10 1.58 6.26 -51.93 -0.33 1.25 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.39 7.52 -51.93 -0.39 0.00 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.99 7.29 -51.93 -0.38 0.61 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 276.40 15.07 4.17 4.17 Total: -1.00 -28.09 276.40 -8.52 -36.61 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.86 Total: -1.20 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 0.39 Total: -10.30 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -2.20 Total: -45.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.09 -8.52 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692680368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.536 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds