Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47001 * 2 1 4 4 C 1.50696 * 109.46918 * 240.00047 * 2 1 3 5 5 H 1.08001 * 120.00299 * 239.99655 * 4 2 1 6 6 C 1.37872 * 120.00228 * 59.99955 * 4 2 1 7 7 N 1.31518 * 120.00276 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47198 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47222 * 120.00079 * 8 6 4 11 11 H 1.48502 * 109.47476 * 240.00157 * 8 6 4 12 12 N 1.46901 * 109.47361 * 120.00006 * 2 1 3 13 13 C 1.46897 * 110.99849 * 58.95061 * 12 2 1 14 14 C 1.46903 * 111.00054 * 295.00141 * 12 2 1 15 15 C 1.52998 * 109.47064 * 190.00001 * 14 12 2 16 16 C 1.53509 * 114.16725 * 184.99732 * 15 14 12 17 17 N 1.47485 * 87.93255 * 220.13899 * 16 15 14 18 18 C 1.46901 * 110.99912 * 138.70680 * 17 16 15 19 19 C 1.47478 * 87.83366 * 27.01321 * 17 16 15 20 20 H 1.09003 * 109.47045 * 299.99654 * 1 2 3 21 21 H 1.08996 * 109.47390 * 60.00146 * 1 2 3 22 22 H 1.09001 * 109.47001 * 179.97438 * 1 2 3 23 23 H 0.96994 * 120.00861 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.47508 * 296.04862 * 13 12 2 25 25 H 1.09003 * 109.46898 * 56.05229 * 13 12 2 26 26 H 1.09008 * 109.46982 * 176.04438 * 13 12 2 27 27 H 1.08998 * 109.46972 * 69.99243 * 14 12 2 28 28 H 1.09007 * 109.46929 * 309.99773 * 14 12 2 29 29 H 1.08994 * 113.25635 * 317.94716 * 15 14 12 30 30 H 1.09003 * 113.47951 * 105.37227 * 16 15 14 31 31 H 1.09001 * 113.53817 * 334.91225 * 16 15 14 32 32 H 1.09002 * 109.47401 * 59.99977 * 18 17 16 33 33 H 1.09001 * 109.46874 * 299.99989 * 18 17 16 34 34 H 1.09004 * 109.46970 * 180.02562 * 18 17 16 35 35 H 1.08996 * 113.47930 * 87.75788 * 19 17 16 36 36 H 1.09000 * 113.47322 * 218.22147 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8164 11 1 3.1471 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6488 0.0391 2.4181 15 6 2.3790 -0.5662 3.6186 16 6 1.9768 0.0404 4.9701 17 7 3.3983 -0.0174 5.3587 18 6 3.7970 1.1991 6.0793 19 6 3.7360 0.0821 3.9265 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7080 1.1608 -3.4843 24 1 0.4420 -2.0731 1.3348 25 1 1.8168 -2.5950 0.3318 26 1 1.9618 -2.5868 2.1059 27 1 0.5723 -0.0345 2.5726 28 1 1.9298 1.0871 2.3125 29 1 2.3975 -1.6560 3.6063 30 1 1.3371 -0.6111 5.5655 31 1 1.5887 1.0561 4.8932 32 1 3.1923 1.3023 6.9804 33 1 3.6449 2.0674 5.4383 34 1 4.8497 1.1303 6.3537 35 1 3.8176 1.1088 3.5699 36 1 4.5873 -0.5342 3.6373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692680368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = 23.372787 kcal Electronic energy + Delta-G solvation = -14673.130026 eV Core-core repulsion = 12385.830620 eV Total energy + Delta-G solvation = -2287.299406 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13867 -38.64126 -34.82744 -32.33863 -30.30064 -28.28334 -27.17295 -26.82703 -25.81718 -23.17846 -20.99547 -20.45940 -18.22019 -17.08986 -16.76604 -16.27130 -16.20341 -15.58266 -15.16718 -14.89619 -14.32401 -14.04625 -13.56200 -13.49336 -13.01575 -12.80514 -12.71580 -12.56950 -12.48747 -12.26552 -12.17626 -11.98558 -11.58251 -11.47861 -11.20473 -10.84561 -10.48774 -9.87361 -8.79432 -8.09643 -6.20095 1.42294 1.44458 1.56118 2.44236 3.13351 3.19759 3.27029 3.69035 3.96560 4.17338 4.34257 4.46438 4.54433 4.57472 4.63167 4.67871 4.70512 4.78699 4.86590 4.90138 4.91317 4.97803 4.99263 5.17931 5.21814 5.32338 5.41820 5.56662 5.73236 5.81742 6.11825 6.21910 6.51336 6.79035 6.94585 7.49380 8.96867 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054944 B = 0.006566 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.487353 B = 4263.397023 C = 4330.004397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.543 5.543 13 C 0.038 3.962 14 C 0.070 3.930 15 C -0.104 4.104 16 C 0.008 3.992 17 N -0.492 5.492 18 C -0.013 4.013 19 C 0.011 3.989 20 H 0.025 0.975 21 H 0.059 0.941 22 H 0.031 0.969 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -1.119 12.979 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.266 5.266 13 C -0.110 4.110 14 C -0.059 4.059 15 C -0.123 4.123 16 C -0.122 4.122 17 N -0.214 5.214 18 C -0.162 4.162 19 C -0.118 4.118 20 H 0.044 0.956 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.470 -1.547 13.275 13.591 hybrid contribution -0.974 0.719 -1.482 1.914 sum 1.496 -0.828 11.793 11.916 Atomic orbital electron populations 1.22192 1.00401 0.99166 0.99923 1.19071 0.89971 0.92902 0.87462 0.97795 1.21435 1.30355 1.12363 0.90919 0.92430 1.25695 0.95462 0.95827 1.01867 1.70019 1.38065 1.24317 1.23888 0.85490 0.78037 0.78646 0.79345 1.19189 1.20725 1.20813 1.62215 1.59727 1.02729 1.01952 1.22232 0.96822 0.90340 1.01588 1.21991 0.96913 0.97172 0.89778 1.22686 0.95886 1.00885 0.92873 1.23861 0.92053 1.01112 0.95151 1.68843 1.07227 1.35166 1.10135 1.22928 1.02675 0.91010 0.99571 1.23837 0.98790 1.00317 0.88864 0.95603 0.92181 0.94947 0.93046 0.96616 0.92715 0.90870 0.95223 0.92579 0.88148 0.88869 0.90778 0.90296 0.94457 0.90674 0.91530 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.65 8.27 71.98 0.60 -7.05 16 2 C 0.21 10.82 2.34 44.17 0.10 10.93 16 3 H 0.00 0.23 8.03 -2.39 -0.02 0.22 16 4 C -0.51 -28.20 7.88 25.60 0.20 -28.00 16 5 H 0.06 3.17 6.77 -2.91 -0.02 3.15 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.54 -22.88 4.74 -901.46 -4.27 -27.16 16 13 C 0.04 1.46 8.60 127.69 1.10 2.56 16 14 C 0.07 2.43 4.31 86.30 0.37 2.81 16 15 C -0.10 -2.95 4.03 -10.45 -0.04 -2.99 16 16 C 0.01 0.18 7.30 83.57 0.61 0.79 16 17 N -0.49 -12.14 6.73 -954.30 -6.42 -18.56 16 18 C -0.01 -0.26 9.69 127.69 1.24 0.98 16 19 C 0.01 0.29 7.28 83.57 0.61 0.90 16 20 H 0.03 1.11 6.75 -2.39 -0.02 1.09 16 21 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 22 H 0.03 1.51 6.48 -2.39 -0.02 1.50 16 23 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 24 H 0.02 0.58 6.51 -2.39 -0.02 0.57 16 25 H 0.05 2.28 6.41 -2.39 -0.02 2.26 16 26 H 0.07 2.34 6.28 -2.38 -0.01 2.32 16 27 H 0.03 1.02 6.94 -2.39 -0.02 1.01 16 28 H 0.06 2.02 7.68 -2.38 -0.02 2.00 16 29 H 0.10 2.89 6.26 -2.39 -0.01 2.87 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.64 7.87 -2.39 -0.02 1.62 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 0.73 7.52 -2.39 -0.02 0.71 16 34 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.85 7.29 -2.39 -0.02 1.83 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -59.13 276.40 -2.16 -61.28 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.04 Total: 9.65 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.23 Total: -18.10 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -10.46 Total: -98.70 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -59.13 -2.16 -61.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692680368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.656 kcal (2) G-P(sol) polarization free energy of solvation -59.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds