Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47627 * 2 1 4 4 C 1.50704 * 109.46716 * 119.99921 * 2 1 3 5 5 H 1.08001 * 120.00063 * 119.99979 * 4 2 1 6 6 C 1.37879 * 119.99668 * 299.99260 * 4 2 1 7 7 N 1.31520 * 119.99733 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00203 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47053 * 89.99897 * 8 6 4 10 10 H 1.48506 * 109.46975 * 209.99944 * 8 6 4 11 11 H 1.48500 * 109.47033 * 329.99403 * 8 6 4 12 12 N 1.46902 * 109.47277 * 239.99387 * 2 1 3 13 13 C 1.46903 * 110.99904 * 306.05167 * 12 2 1 14 14 C 1.46902 * 110.99941 * 70.00248 * 12 2 1 15 15 C 1.52996 * 109.47151 * 170.00269 * 14 12 2 16 16 C 1.53935 * 113.73564 * 86.23442 * 15 14 12 17 17 N 1.48296 * 86.06285 * 138.12918 * 16 15 14 18 18 C 1.46902 * 111.00409 * 222.41947 * 17 16 15 19 19 C 1.47961 * 90.75572 * 335.31010 * 17 16 15 20 20 H 1.09002 * 109.46995 * 60.00535 * 1 2 3 21 21 H 1.08994 * 109.47739 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47122 * 300.00787 * 1 2 3 23 23 H 0.96992 * 119.99944 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.47002 * 183.95072 * 13 12 2 25 25 H 1.09003 * 109.47157 * 303.94919 * 13 12 2 26 26 H 1.09000 * 109.47457 * 63.94864 * 13 12 2 27 27 H 1.09002 * 109.46961 * 49.99963 * 14 12 2 28 28 H 1.09006 * 109.47133 * 290.00352 * 14 12 2 29 29 H 1.09002 * 112.93723 * 314.66620 * 15 14 12 30 30 H 1.09001 * 113.76001 * 252.50503 * 16 15 14 31 31 H 1.09000 * 113.75996 * 23.86319 * 16 15 14 32 32 H 1.09001 * 109.46954 * 159.35275 * 18 17 16 33 33 H 1.09001 * 109.47223 * 279.35221 * 18 17 16 34 34 H 1.08999 * 109.47582 * 39.35488 * 18 17 16 35 35 H 1.09007 * 113.75652 * 270.36911 * 19 17 16 36 36 H 1.08992 * 113.86038 * 139.01836 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5567 8 14 0.6248 1.2793 2.6540 9 1 -0.8027 0.8731 2.6997 10 1 0.9761 1.9954 3.9067 11 1 0.8473 2.1767 1.4919 12 7 2.0197 -0.6926 -1.1994 13 6 1.4342 -2.0356 -1.3077 14 6 1.7530 0.0970 -2.4091 15 6 2.4885 -0.5260 -3.5972 16 6 1.6973 -1.6450 -4.2981 17 7 2.1682 -1.0422 -5.5685 18 6 1.0867 -0.9952 -6.5617 19 6 2.3371 0.2700 -4.9061 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.9033 -0.5276 4.4376 24 1 1.8663 -2.5522 -2.1646 25 1 1.6465 -2.5989 -0.3989 26 1 0.3555 -1.9522 -1.4397 27 1 2.1026 1.1187 -2.2604 28 1 0.6814 0.1051 -2.6088 29 1 3.5185 -0.7964 -3.3648 30 1 2.0909 -2.6443 -4.1116 31 1 0.6190 -1.5776 -4.1531 32 1 1.3222 -0.2485 -7.3201 33 1 0.9840 -1.9724 -7.0335 34 1 0.1517 -0.7297 -6.0685 35 1 1.4456 0.8963 -4.9386 36 1 3.2410 0.8012 -5.2040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692680371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 50.444401 kcal Electronic energy + Delta-G solvation = -14806.341999 eV Core-core repulsion = 12520.216506 eV Total energy + Delta-G solvation = -2286.125492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97823 -37.12464 -32.81962 -31.18941 -29.31027 -27.18214 -25.94872 -25.22597 -24.34490 -21.71489 -19.46802 -19.21420 -16.68300 -15.96613 -15.53972 -15.08132 -14.66875 -14.26582 -13.90431 -13.32160 -12.90018 -12.71482 -12.60380 -12.21972 -11.82877 -11.64820 -11.30010 -11.20310 -11.07852 -10.75684 -10.64539 -10.23980 -10.11092 -9.98379 -9.49858 -9.05997 -8.79830 -8.57111 -7.32739 -6.05410 -4.03044 3.25273 3.35514 3.38184 3.96311 4.40061 4.49725 4.73740 5.02752 5.11452 5.25863 5.32808 5.44936 5.47220 5.63339 5.70756 5.75461 5.79842 5.96151 6.07764 6.12479 6.20651 6.24247 6.29322 6.35709 6.51905 6.55963 6.73878 6.89020 7.02292 7.19866 7.65399 7.96091 8.10061 8.68144 9.03145 9.56964 11.07872 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061327 B = 0.007120 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.455909 B = 3931.709909 C = 4086.683318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.180 3.820 3 H 0.038 0.962 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.521 5.521 13 C 0.030 3.970 14 C 0.059 3.941 15 C -0.103 4.103 16 C 0.005 3.995 17 N -0.488 5.488 18 C -0.010 4.010 19 C 0.003 3.997 20 H 0.026 0.974 21 H 0.056 0.944 22 H 0.044 0.956 23 H 0.263 0.737 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.014 0.986 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 1.569 -15.409 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.072 3.928 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.243 5.243 13 C -0.119 4.119 14 C -0.070 4.070 15 C -0.122 4.122 16 C -0.123 4.123 17 N -0.210 5.210 18 C -0.159 4.159 19 C -0.126 4.126 20 H 0.045 0.955 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.284 1.213 -15.546 15.760 hybrid contribution -2.458 1.284 0.468 2.812 sum -4.742 2.497 -15.078 16.002 Atomic orbital electron populations 1.22820 1.01836 1.00997 0.98727 1.19797 0.88606 0.95242 0.89170 0.94423 1.20948 1.31348 1.13725 0.87764 0.89978 1.24922 0.95932 0.96570 0.95856 1.69880 1.45816 1.40366 0.97842 0.86890 0.80510 0.84003 0.76894 1.20885 1.22424 1.19424 1.62162 1.58448 1.02413 1.01327 1.22382 0.95750 0.91671 1.02067 1.22112 0.96447 0.97759 0.90692 1.22996 1.01470 0.95014 0.92758 1.24230 0.98562 1.00048 0.89502 1.68554 1.34976 1.10706 1.06761 1.22841 0.93477 1.02397 0.97233 1.23978 1.01737 0.92653 0.94282 0.95526 0.92481 0.93779 0.92673 0.92999 0.90395 0.96793 0.91194 0.95826 0.87446 0.89278 0.91545 0.91666 0.91410 0.94954 0.91591 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.03 7.92 37.16 0.29 -3.73 16 2 C 0.18 4.23 1.90 -68.86 -0.13 4.09 16 3 H 0.04 0.92 6.99 -51.93 -0.36 0.56 16 4 C -0.50 -13.93 8.49 -34.44 -0.29 -14.22 16 5 H 0.08 2.50 7.37 -52.49 -0.39 2.12 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 8 Si 0.89 21.94 24.37 -169.99 -4.14 17.79 16 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.52 -10.58 4.70 -236.28 -1.11 -11.70 16 13 C 0.03 0.55 8.12 60.07 0.49 1.04 16 14 C 0.06 0.98 4.45 -3.83 -0.02 0.96 16 15 C -0.10 -1.45 3.65 -89.69 -0.33 -1.78 16 16 C 0.00 0.06 5.74 -2.57 -0.01 0.05 16 17 N -0.49 -6.16 6.56 -246.29 -1.62 -7.78 16 18 C -0.01 -0.11 9.65 60.07 0.58 0.47 16 19 C 0.00 0.03 7.55 -2.76 -0.02 0.01 16 20 H 0.03 0.50 6.91 -51.93 -0.36 0.14 16 21 H 0.06 1.22 6.42 -51.93 -0.33 0.89 16 22 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.05 0.83 5.35 -51.93 -0.28 0.56 16 25 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 26 H 0.01 0.25 6.46 -51.93 -0.34 -0.09 16 27 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 28 H 0.02 0.39 6.79 -51.93 -0.35 0.03 16 29 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.09 1.16 7.35 -51.93 -0.38 0.78 16 31 H 0.07 0.85 7.40 -51.93 -0.38 0.47 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.03 0.33 7.63 -51.93 -0.40 -0.07 16 35 H 0.07 0.75 7.88 -51.92 -0.41 0.34 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 268.41 15.07 4.04 4.04 Total: -1.00 -29.58 268.41 -7.37 -36.96 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.78 Total: -1.40 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 0.46 Total: -11.23 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -1.95 Total: -46.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.58 -7.37 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692680371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.400 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds