Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47627 * 2 1 4 4 C 1.50704 * 109.46716 * 119.99921 * 2 1 3 5 5 H 1.08001 * 120.00063 * 119.99979 * 4 2 1 6 6 C 1.37879 * 119.99668 * 299.99260 * 4 2 1 7 7 N 1.31520 * 119.99733 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00203 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47053 * 89.99897 * 8 6 4 10 10 H 1.48506 * 109.46975 * 209.99944 * 8 6 4 11 11 H 1.48500 * 109.47033 * 329.99403 * 8 6 4 12 12 N 1.46902 * 109.47277 * 239.99387 * 2 1 3 13 13 C 1.46903 * 110.99904 * 306.05167 * 12 2 1 14 14 C 1.46902 * 110.99941 * 70.00248 * 12 2 1 15 15 C 1.52996 * 109.47151 * 170.00269 * 14 12 2 16 16 C 1.53935 * 113.73564 * 86.23442 * 15 14 12 17 17 N 1.48296 * 86.06285 * 138.12918 * 16 15 14 18 18 C 1.46902 * 111.00409 * 222.41947 * 17 16 15 19 19 C 1.47961 * 90.75572 * 335.31010 * 17 16 15 20 20 H 1.09002 * 109.46995 * 60.00535 * 1 2 3 21 21 H 1.08994 * 109.47739 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47122 * 300.00787 * 1 2 3 23 23 H 0.96992 * 119.99944 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.47002 * 183.95072 * 13 12 2 25 25 H 1.09003 * 109.47157 * 303.94919 * 13 12 2 26 26 H 1.09000 * 109.47457 * 63.94864 * 13 12 2 27 27 H 1.09002 * 109.46961 * 49.99963 * 14 12 2 28 28 H 1.09006 * 109.47133 * 290.00352 * 14 12 2 29 29 H 1.09002 * 112.93723 * 314.66620 * 15 14 12 30 30 H 1.09001 * 113.76001 * 252.50503 * 16 15 14 31 31 H 1.09000 * 113.75996 * 23.86319 * 16 15 14 32 32 H 1.09001 * 109.46954 * 159.35275 * 18 17 16 33 33 H 1.09001 * 109.47223 * 279.35221 * 18 17 16 34 34 H 1.08999 * 109.47582 * 39.35488 * 18 17 16 35 35 H 1.09007 * 113.75652 * 270.36911 * 19 17 16 36 36 H 1.08992 * 113.86038 * 139.01836 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5567 8 14 0.6248 1.2793 2.6540 9 1 -0.8027 0.8731 2.6997 10 1 0.9761 1.9954 3.9067 11 1 0.8473 2.1767 1.4919 12 7 2.0197 -0.6926 -1.1994 13 6 1.4342 -2.0356 -1.3077 14 6 1.7530 0.0970 -2.4091 15 6 2.4885 -0.5260 -3.5972 16 6 1.6973 -1.6450 -4.2981 17 7 2.1682 -1.0422 -5.5685 18 6 1.0867 -0.9952 -6.5617 19 6 2.3371 0.2700 -4.9061 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.9033 -0.5276 4.4376 24 1 1.8663 -2.5522 -2.1646 25 1 1.6465 -2.5989 -0.3989 26 1 0.3555 -1.9522 -1.4397 27 1 2.1026 1.1187 -2.2604 28 1 0.6814 0.1051 -2.6088 29 1 3.5185 -0.7964 -3.3648 30 1 2.0909 -2.6443 -4.1116 31 1 0.6190 -1.5776 -4.1531 32 1 1.3222 -0.2485 -7.3201 33 1 0.9840 -1.9724 -7.0335 34 1 0.1517 -0.7297 -6.0685 35 1 1.4456 0.8963 -4.9386 36 1 3.2410 0.8012 -5.2040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692680371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 26.747745 kcal Electronic energy + Delta-G solvation = -14807.369563 eV Core-core repulsion = 12520.216506 eV Total energy + Delta-G solvation = -2287.153056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04181 -38.70673 -34.77997 -32.66530 -30.80441 -28.45754 -27.26646 -26.87264 -25.78162 -23.02336 -20.93623 -20.53048 -18.68074 -17.26957 -17.02818 -16.27914 -16.05873 -15.71759 -15.34061 -14.82215 -14.54892 -14.10189 -13.83300 -13.65540 -13.37284 -13.07116 -13.00123 -12.62635 -12.40123 -12.12831 -12.06670 -11.85001 -11.55357 -11.37964 -11.29169 -11.01626 -10.74235 -9.75542 -8.90623 -8.26225 -6.28491 1.29667 1.35721 1.45763 2.32845 3.01174 3.07778 3.20343 3.63741 3.94059 4.17559 4.33914 4.39667 4.41872 4.49334 4.54034 4.58240 4.60524 4.65558 4.73927 4.78013 4.81757 4.87925 4.95605 4.99476 5.06077 5.24272 5.39222 5.39622 5.44323 5.65137 6.07764 6.11091 6.45582 6.74388 6.78626 7.36103 8.90891 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061327 B = 0.007120 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.455909 B = 3931.709909 C = 4086.683318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.182 3.818 3 H 0.033 0.967 4 C -0.501 4.501 5 H 0.038 0.962 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.950 3.050 9 H -0.269 1.269 10 H -0.299 1.299 11 H -0.248 1.248 12 N -0.540 5.540 13 C 0.038 3.962 14 C 0.063 3.937 15 C -0.105 4.105 16 C 0.008 3.992 17 N -0.501 5.501 18 C -0.011 4.011 19 C 0.013 3.987 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.035 0.965 23 H 0.265 0.735 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 3.012 -17.624 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 H 0.051 0.949 4 C -0.539 4.539 5 H 0.056 0.944 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.227 1.227 11 H -0.172 1.172 12 N -0.263 5.263 13 C -0.110 4.110 14 C -0.065 4.065 15 C -0.124 4.124 16 C -0.120 4.120 17 N -0.224 5.224 18 C -0.160 4.160 19 C -0.116 4.116 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.794 2.654 -17.802 18.394 hybrid contribution -1.901 0.744 1.090 2.314 sum -5.695 3.398 -16.712 17.979 Atomic orbital electron populations 1.22680 0.99944 1.01301 0.99840 1.19590 0.89943 0.94372 0.88731 0.94937 1.21205 1.30241 1.12446 0.90057 0.94420 1.25779 0.97555 0.99962 0.95389 1.70041 1.47978 1.42619 0.98523 0.85838 0.78928 0.80161 0.77300 1.19566 1.22698 1.17216 1.62040 1.59148 1.03217 1.01890 1.22288 0.96559 0.90841 1.01345 1.22156 0.97440 0.97340 0.89576 1.22902 1.00465 0.96343 0.92727 1.24194 0.98666 0.99489 0.89696 1.68538 1.36063 1.10883 1.06899 1.22888 0.92944 1.03204 0.96945 1.23970 1.02726 0.92568 0.92359 0.92225 0.92684 0.94652 0.92632 0.90482 0.93918 0.95631 0.91183 0.94675 0.89038 0.89626 0.90902 0.90523 0.90891 0.94424 0.90273 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.32 7.92 71.98 0.57 -6.75 16 2 C 0.18 8.39 1.90 44.17 0.08 8.47 16 3 H 0.03 1.54 6.99 -2.39 -0.02 1.53 16 4 C -0.50 -28.59 8.49 25.60 0.22 -28.38 16 5 H 0.04 2.42 7.37 -2.91 -0.02 2.40 16 6 C 0.01 0.57 5.45 84.65 0.46 1.04 16 7 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 8 Si 0.95 44.83 24.37 68.60 1.67 46.50 16 9 H -0.27 -12.11 6.87 99.48 0.68 -11.43 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.25 -10.78 6.53 99.48 0.65 -10.13 16 12 N -0.54 -21.44 4.70 -901.46 -4.24 -25.68 16 13 C 0.04 1.39 8.12 127.69 1.04 2.42 16 14 C 0.06 1.93 4.45 86.30 0.38 2.32 16 15 C -0.11 -2.73 3.65 -10.15 -0.04 -2.77 16 16 C 0.01 0.19 5.74 86.34 0.50 0.68 16 17 N -0.50 -11.24 6.56 -933.13 -6.12 -17.37 16 18 C -0.01 -0.19 9.65 127.69 1.23 1.04 16 19 C 0.01 0.27 7.55 86.41 0.65 0.92 16 20 H 0.06 2.03 6.91 -2.39 -0.02 2.02 16 21 H 0.05 2.24 6.42 -2.39 -0.02 2.23 16 22 H 0.03 1.50 3.27 -2.39 -0.01 1.49 16 23 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 24 H 0.08 2.40 5.35 -2.39 -0.01 2.38 16 25 H 0.04 1.85 6.76 -2.39 -0.02 1.83 16 26 H 0.03 0.87 6.46 -2.39 -0.02 0.85 16 27 H 0.07 2.13 7.93 -2.39 -0.02 2.12 16 28 H 0.04 1.01 6.79 -2.38 -0.02 0.99 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.09 2.06 7.35 -2.39 -0.02 2.04 16 31 H 0.07 1.63 7.40 -2.39 -0.02 1.61 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.04 0.63 7.63 -2.39 -0.02 0.61 16 35 H 0.08 1.48 7.88 -2.38 -0.02 1.46 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -64.42 268.41 -2.33 -66.75 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.96 Total: 10.27 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 5.10 Total: -21.00 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -10.06 Total: -102.52 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.50 kcal Total: -64.42 -2.33 -66.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692680371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.498 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds