Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47327 * 2 1 4 4 C 1.47956 * 111.00069 * 169.99798 * 3 2 1 5 5 C 1.53939 * 86.17817 * 222.41655 * 4 3 2 6 6 C 1.53006 * 113.73184 * 138.07986 * 5 4 3 7 7 N 1.46905 * 109.46684 * 174.99773 * 6 5 4 8 8 C 1.46894 * 110.99932 * 66.04603 * 7 6 5 9 9 C 1.46898 * 110.99560 * 189.99851 * 7 6 5 10 10 C 1.50700 * 109.47165 * 169.99896 * 9 7 6 11 11 H 1.08011 * 119.99760 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00614 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99633 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00602 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47049 * 89.99735 * 14 12 10 16 16 H 1.48500 * 109.47439 * 210.00216 * 14 12 10 17 17 H 1.48505 * 109.47079 * 330.00792 * 14 12 10 18 18 C 1.47963 * 110.99920 * 70.63590 * 3 2 1 19 19 H 1.09003 * 109.46569 * 60.00394 * 1 2 3 20 20 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47270 * 300.00512 * 1 2 3 22 22 H 1.09002 * 109.47378 * 239.99158 * 2 1 3 23 23 H 1.09003 * 109.46569 * 119.99606 * 2 1 3 24 24 H 1.09002 * 113.76134 * 108.09759 * 4 3 2 25 25 H 1.09003 * 113.75805 * 336.73078 * 4 3 2 26 26 H 1.09001 * 113.73297 * 269.24966 * 5 4 3 27 27 H 1.08995 * 109.46794 * 294.99899 * 6 5 4 28 28 H 1.09000 * 109.47314 * 55.00032 * 6 5 4 29 29 H 1.09006 * 109.47495 * 59.99699 * 8 7 6 30 30 H 1.08998 * 109.47057 * 179.97438 * 8 7 6 31 31 H 1.08997 * 109.47661 * 299.99803 * 8 7 6 32 32 H 1.08999 * 109.47300 * 290.00028 * 9 7 6 33 33 H 1.09003 * 109.47363 * 50.00193 * 9 7 6 34 34 H 0.97000 * 120.00393 * 179.97438 * 13 12 10 35 35 H 1.08997 * 113.76042 * 23.26485 * 18 3 2 36 36 H 1.08998 * 113.75718 * 251.90176 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4790 1.4314 0.2399 5 6 3.1837 2.6196 1.1730 6 6 3.9829 2.5917 2.4774 7 7 3.7210 3.8206 3.2385 8 6 2.3230 3.8746 3.6862 9 6 4.6430 3.9420 4.3756 10 6 4.5139 5.3153 4.9826 11 1 3.8162 6.0266 4.5656 12 6 5.2854 5.6635 6.0709 13 7 6.1346 4.7972 6.5790 14 14 5.1248 7.3655 6.8237 15 1 4.0840 7.3422 7.8827 16 1 6.4251 7.7694 7.4164 17 1 4.7375 8.3381 5.7704 18 6 1.7647 2.0376 1.3032 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5140 -0.8899 23 1 1.8932 -0.5138 0.8901 24 1 4.0607 1.6995 -0.6420 25 1 3.8673 0.5535 0.7563 26 1 3.2184 3.5882 0.6742 27 1 3.6825 1.7269 3.0690 28 1 5.0469 2.5248 2.2503 29 1 2.1124 3.0165 4.3246 30 1 2.1565 4.7941 4.2474 31 1 1.6627 3.8531 2.8193 32 1 4.3974 3.1892 5.1246 33 1 5.6663 3.7918 4.0314 34 1 6.6777 5.0422 7.3445 35 1 1.6515 1.3370 2.1305 36 1 0.9767 2.7900 1.2708 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692703819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = 32.070218 kcal Electronic energy + Delta-G solvation = -14351.192808 eV Core-core repulsion = 12064.270551 eV Total energy + Delta-G solvation = -2286.922257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01815 -36.30435 -33.01474 -32.21502 -28.69051 -27.12318 -26.23378 -25.26419 -23.43618 -21.30787 -20.01300 -19.41666 -16.38434 -16.05240 -15.38389 -15.08170 -14.68614 -14.26879 -13.83702 -13.29588 -13.09364 -12.56632 -12.38081 -12.05625 -11.87295 -11.45446 -11.33274 -11.08359 -11.00141 -10.87930 -10.67066 -10.46823 -10.26769 -10.15378 -9.75511 -9.18711 -8.73185 -8.42432 -7.21797 -6.01320 -4.02490 3.32831 3.38946 3.43748 3.98069 4.42378 4.61521 4.81110 4.91771 5.06558 5.27760 5.33308 5.36194 5.46850 5.51760 5.65376 5.77030 5.80308 5.86972 5.89333 6.00469 6.07813 6.18451 6.25444 6.35262 6.45858 6.61189 6.78703 7.10711 7.31601 7.36053 7.82212 8.11117 8.22812 8.57730 9.05389 9.61718 11.09708 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.071692 B = 0.005532 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.464365 B = 5059.916129 C = 5207.258247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.015 3.985 3 N -0.483 5.483 4 C 0.004 3.996 5 C -0.103 4.103 6 C 0.063 3.937 7 N -0.539 5.539 8 C 0.036 3.964 9 C 0.191 3.809 10 C -0.506 4.506 11 H 0.064 0.936 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.898 3.102 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.272 1.272 18 C 0.007 3.993 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.007 0.993 30 H 0.072 0.928 31 H 0.049 0.951 32 H -0.011 1.011 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 -8.157 -10.456 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 N -0.206 5.206 4 C -0.125 4.125 5 C -0.123 4.123 6 C -0.066 4.066 7 N -0.263 5.263 8 C -0.113 4.113 9 C 0.066 3.934 10 C -0.545 4.545 11 H 0.082 0.918 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.726 3.274 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.122 4.122 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.056 0.944 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.007 0.993 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.033 -7.525 -11.228 15.723 hybrid contribution 0.165 -0.398 1.828 1.878 sum -7.868 -7.922 -9.400 14.595 Atomic orbital electron populations 1.21715 0.94901 1.01346 1.02484 1.22584 0.96514 0.91446 1.00799 1.68551 1.06950 1.14233 1.30870 1.23973 0.90682 0.98364 0.99506 1.23013 0.94220 0.98892 0.96129 1.22065 0.99485 0.91981 0.93102 1.62115 1.04097 1.33324 1.26743 1.22287 0.90047 1.00793 0.98162 1.19737 0.91095 0.96700 0.85834 1.21178 1.22112 0.98570 1.12609 0.91832 1.24994 0.95308 0.97452 0.96920 1.69962 1.24854 1.34884 1.24296 0.86498 0.77303 0.84330 0.79301 1.20775 1.21262 1.19726 1.24086 0.98888 0.98358 0.90823 0.91997 0.92544 0.92683 0.90979 0.94449 0.89477 0.91523 0.87584 0.96198 0.91148 0.97440 0.90953 0.93215 0.99307 0.95280 0.92960 0.91649 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.98 37.16 0.37 -1.06 16 2 C 0.02 0.17 5.54 -3.82 -0.02 0.15 16 3 N -0.48 -6.24 6.26 -238.30 -1.49 -7.73 16 4 C 0.00 0.05 7.54 -2.77 -0.02 0.03 16 5 C -0.10 -1.53 3.60 -89.68 -0.32 -1.86 16 6 C 0.06 1.13 4.88 -3.82 -0.02 1.11 16 7 N -0.54 -11.74 4.75 -244.37 -1.16 -12.91 16 8 C 0.04 0.70 8.83 60.06 0.53 1.23 16 9 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16 10 C -0.51 -14.38 8.46 -34.44 -0.29 -14.67 16 11 H 0.06 1.79 7.12 -52.48 -0.37 1.41 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 14 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.01 0.09 4.99 -2.77 -0.01 0.08 16 19 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.41 7.69 -51.93 -0.40 0.01 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 26 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 27 H 0.02 0.36 7.82 -51.93 -0.41 -0.05 16 28 H 0.07 1.28 7.93 -51.93 -0.41 0.86 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 31 H 0.05 0.83 5.50 -51.93 -0.29 0.54 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 36 H 0.09 1.16 7.40 -51.93 -0.38 0.78 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -29.73 285.41 -8.85 -38.58 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -6.30 Total: -4.25 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -1.92 Total: -46.89 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.73 -8.85 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692703819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.651 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds