Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47327 * 2 1 4 4 C 1.47956 * 111.00069 * 169.99798 * 3 2 1 5 5 C 1.53939 * 86.17817 * 222.41655 * 4 3 2 6 6 C 1.53006 * 113.73184 * 138.07986 * 5 4 3 7 7 N 1.46905 * 109.46684 * 174.99773 * 6 5 4 8 8 C 1.46894 * 110.99932 * 66.04603 * 7 6 5 9 9 C 1.46898 * 110.99560 * 189.99851 * 7 6 5 10 10 C 1.50700 * 109.47165 * 169.99896 * 9 7 6 11 11 H 1.08011 * 119.99760 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00614 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99633 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00602 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47049 * 89.99735 * 14 12 10 16 16 H 1.48500 * 109.47439 * 210.00216 * 14 12 10 17 17 H 1.48505 * 109.47079 * 330.00792 * 14 12 10 18 18 C 1.47963 * 110.99920 * 70.63590 * 3 2 1 19 19 H 1.09003 * 109.46569 * 60.00394 * 1 2 3 20 20 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47270 * 300.00512 * 1 2 3 22 22 H 1.09002 * 109.47378 * 239.99158 * 2 1 3 23 23 H 1.09003 * 109.46569 * 119.99606 * 2 1 3 24 24 H 1.09002 * 113.76134 * 108.09759 * 4 3 2 25 25 H 1.09003 * 113.75805 * 336.73078 * 4 3 2 26 26 H 1.09001 * 113.73297 * 269.24966 * 5 4 3 27 27 H 1.08995 * 109.46794 * 294.99899 * 6 5 4 28 28 H 1.09000 * 109.47314 * 55.00032 * 6 5 4 29 29 H 1.09006 * 109.47495 * 59.99699 * 8 7 6 30 30 H 1.08998 * 109.47057 * 179.97438 * 8 7 6 31 31 H 1.08997 * 109.47661 * 299.99803 * 8 7 6 32 32 H 1.08999 * 109.47300 * 290.00028 * 9 7 6 33 33 H 1.09003 * 109.47363 * 50.00193 * 9 7 6 34 34 H 0.97000 * 120.00393 * 179.97438 * 13 12 10 35 35 H 1.08997 * 113.76042 * 23.26485 * 18 3 2 36 36 H 1.08998 * 113.75718 * 251.90176 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4790 1.4314 0.2399 5 6 3.1837 2.6196 1.1730 6 6 3.9829 2.5917 2.4774 7 7 3.7210 3.8206 3.2385 8 6 2.3230 3.8746 3.6862 9 6 4.6430 3.9420 4.3756 10 6 4.5139 5.3153 4.9826 11 1 3.8162 6.0266 4.5656 12 6 5.2854 5.6635 6.0709 13 7 6.1346 4.7972 6.5790 14 14 5.1248 7.3655 6.8237 15 1 4.0840 7.3422 7.8827 16 1 6.4251 7.7694 7.4164 17 1 4.7375 8.3381 5.7704 18 6 1.7647 2.0376 1.3032 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5140 -0.8899 23 1 1.8932 -0.5138 0.8901 24 1 4.0607 1.6995 -0.6420 25 1 3.8673 0.5535 0.7563 26 1 3.2184 3.5882 0.6742 27 1 3.6825 1.7269 3.0690 28 1 5.0469 2.5248 2.2503 29 1 2.1124 3.0165 4.3246 30 1 2.1565 4.7941 4.2474 31 1 1.6627 3.8531 2.8193 32 1 4.3974 3.1892 5.1246 33 1 5.6663 3.7918 4.0314 34 1 6.6777 5.0422 7.3445 35 1 1.6515 1.3370 2.1305 36 1 0.9767 2.7900 1.2708 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692703819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = 10.359254 kcal Electronic energy + Delta-G solvation = -14352.134266 eV Core-core repulsion = 12064.270551 eV Total energy + Delta-G solvation = -2287.863715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12630 -37.98862 -34.79864 -33.57820 -30.17955 -28.85920 -27.56044 -26.55994 -25.04050 -22.69818 -21.49918 -20.57604 -18.49858 -17.21398 -16.80220 -16.53558 -16.10156 -15.74886 -15.34251 -14.76359 -14.48775 -13.90406 -13.67635 -13.53689 -13.17664 -13.00280 -12.72290 -12.67231 -12.54200 -12.36487 -12.14286 -12.01904 -11.82456 -11.48357 -11.32102 -11.09875 -10.62078 -9.76553 -9.02372 -8.20585 -6.30918 1.41664 1.43216 1.55138 2.40840 2.96605 3.11859 3.25074 3.60188 3.90759 4.04766 4.21109 4.34364 4.40391 4.48854 4.52768 4.60081 4.67359 4.69189 4.74920 4.82839 4.91450 4.95778 5.04719 5.10388 5.18289 5.21268 5.30278 5.38812 5.46475 5.65445 6.05229 6.12042 6.33464 6.64725 6.85547 7.39066 8.90710 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.071692 B = 0.005532 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.464365 B = 5059.916129 C = 5207.258247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.013 3.987 3 N -0.489 5.489 4 C 0.012 3.988 5 C -0.103 4.103 6 C 0.066 3.934 7 N -0.547 5.547 8 C 0.041 3.959 9 C 0.206 3.794 10 C -0.524 4.524 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.971 3.029 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.264 1.264 18 C 0.012 3.988 19 H 0.059 0.941 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.007 0.993 30 H 0.054 0.946 31 H 0.082 0.918 32 H -0.040 1.040 33 H 0.003 0.997 34 H 0.265 0.735 35 H 0.065 0.935 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 -7.997 -11.260 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 N -0.212 5.212 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.063 4.063 7 N -0.271 5.271 8 C -0.107 4.107 9 C 0.079 3.921 10 C -0.563 4.563 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.577 5.577 14 Si 0.795 3.205 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.116 4.116 19 H 0.078 0.922 20 H 0.091 0.909 21 H 0.067 0.933 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.101 0.899 32 H -0.022 1.022 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.137 -7.377 -12.055 16.829 hybrid contribution 0.500 -0.519 2.034 2.158 sum -8.637 -7.895 -10.021 15.407 Atomic orbital electron populations 1.21699 0.93980 1.02383 1.02073 1.22667 0.97319 0.90264 1.01326 1.68553 1.06892 1.15609 1.30151 1.23964 0.91038 0.97372 0.99286 1.22912 0.95005 0.99612 0.94665 1.22112 0.99830 0.90263 0.94087 1.62045 1.04425 1.35770 1.24891 1.22269 0.89233 0.99825 0.99373 1.19401 0.90846 0.95314 0.86514 1.21488 1.22291 0.99329 1.13155 0.91815 1.25935 0.94706 1.01765 0.97305 1.70089 1.25639 1.37109 1.24842 0.85360 0.77563 0.79038 0.78527 1.19764 1.20707 1.18844 1.24026 0.97800 0.98415 0.91395 0.92165 0.90856 0.93287 0.89909 0.94434 0.88377 0.90793 0.88444 0.96152 0.91922 0.97452 0.92724 0.89926 1.02233 0.97893 0.92672 0.91637 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.98 71.98 0.72 -1.75 16 2 C 0.01 0.25 5.54 86.30 0.48 0.72 16 3 N -0.49 -11.53 6.26 -907.85 -5.69 -17.21 16 4 C 0.01 0.29 7.54 86.41 0.65 0.94 16 5 C -0.10 -2.92 3.60 -10.15 -0.04 -2.95 16 6 C 0.07 2.35 4.88 86.30 0.42 2.77 16 7 N -0.55 -24.07 4.75 -927.05 -4.41 -28.48 16 8 C 0.04 1.60 8.83 127.69 1.13 2.73 16 9 C 0.21 11.22 4.72 85.56 0.40 11.63 16 10 C -0.52 -30.22 8.46 25.60 0.22 -30.00 16 11 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.94 -57.00 13.29 21.45 0.28 -56.71 16 14 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 C 0.01 0.31 4.99 86.40 0.43 0.74 16 19 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.05 0.89 7.54 -2.39 -0.02 0.88 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.04 0.74 7.69 -2.39 -0.02 0.72 16 24 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.07 1.64 7.75 -2.39 -0.02 1.62 16 26 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.02 0.73 7.82 -2.39 -0.02 0.71 16 28 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 29 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.05 2.30 6.76 -2.39 -0.02 2.28 16 31 H 0.08 2.63 5.50 -2.39 -0.01 2.62 16 32 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 33 H 0.00 0.17 7.93 -2.39 -0.02 0.15 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.07 1.66 7.53 -2.39 -0.02 1.64 16 36 H 0.09 2.20 7.40 -2.39 -0.02 2.18 16 Total: -1.00 -63.45 285.41 -1.89 -65.34 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.02 Total: 5.13 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.87 Total: -14.67 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -9.81 Total: -102.40 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.45 -1.89 -65.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692703819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.694 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds