Wall clock time and date at job start Mon Mar 30 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47156 * 2 1 4 4 C 1.36932 * 119.99524 * 262.98613 * 3 2 1 5 5 H 1.08006 * 120.00061 * 141.66742 * 4 3 2 6 6 C 1.38818 * 120.00756 * 321.67301 * 4 3 2 7 7 N 1.31621 * 119.99234 * 340.59964 * 6 4 3 8 8 Si 1.86792 * 120.00552 * 160.59802 * 6 4 3 9 9 H 1.48503 * 109.47279 * 59.99722 * 8 6 4 10 10 H 1.48495 * 109.47403 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47019 * 300.00238 * 8 6 4 12 12 C 1.46492 * 120.00008 * 82.99083 * 3 2 1 13 13 H 1.08990 * 110.65052 * 358.30192 * 12 3 2 14 14 C 1.54597 * 110.72317 * 121.45565 * 12 3 2 15 15 C 1.53990 * 105.14224 * 140.49319 * 14 12 3 16 16 N 1.47902 * 107.06043 * 1.22120 * 15 14 12 17 17 C 1.46895 * 111.00349 * 214.16118 * 16 15 14 18 18 C 1.52993 * 109.47419 * 174.90073 * 17 16 15 19 19 C 1.48537 * 105.81719 * 334.67257 * 16 15 14 20 20 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46953 * 300.00502 * 1 2 3 22 22 H 1.09005 * 109.46823 * 60.00310 * 1 2 3 23 23 H 1.08996 * 109.46953 * 239.99498 * 2 1 3 24 24 H 1.09005 * 109.46823 * 119.99689 * 2 1 3 25 25 H 0.97004 * 119.99765 * 179.97438 * 7 6 4 26 26 H 1.09007 * 110.31140 * 21.57090 * 14 12 3 27 27 H 1.09000 * 110.39024 * 259.44846 * 14 12 3 28 28 H 1.09008 * 109.91733 * 241.86840 * 15 14 12 29 29 H 1.08999 * 110.08770 * 120.67252 * 15 14 12 30 30 H 1.09005 * 109.47045 * 294.90227 * 17 16 15 31 31 H 1.09008 * 109.47276 * 54.89765 * 17 16 15 32 32 H 1.08998 * 109.47298 * 293.39764 * 18 17 16 33 33 H 1.09005 * 109.47265 * 53.39595 * 18 17 16 34 34 H 1.08997 * 109.47321 * 173.39403 * 18 17 16 35 35 H 1.09001 * 110.66849 * 157.64035 * 19 16 15 36 36 H 1.09002 * 110.66407 * 280.77187 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3831 1.9784 -1.1771 5 1 2.1537 3.0198 -1.3480 6 6 3.0476 1.2453 -2.1507 7 7 3.6614 0.1267 -1.8276 8 14 3.0708 1.8462 -3.9192 9 1 3.7109 3.1849 -3.9788 10 1 3.8403 0.8913 -4.7565 11 1 1.6789 1.9401 -4.4283 12 6 2.1166 2.1234 1.2592 13 1 1.7611 1.5165 2.0918 14 6 3.5687 2.5932 1.5055 15 6 3.4387 4.0103 2.0939 16 7 1.9932 4.3050 2.2003 17 6 1.7267 5.7287 1.9558 18 6 0.2161 5.9710 1.9484 19 6 1.3305 3.4561 1.1773 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 4.1254 -0.3859 -2.5080 26 1 4.1213 2.6227 0.5663 27 1 4.0662 1.9329 2.2158 28 1 3.9171 4.7325 1.4322 29 1 3.8993 4.0495 3.0809 30 1 2.1865 6.3250 2.7440 31 1 2.1456 6.0165 0.9914 32 1 -0.2283 5.4683 1.0894 33 1 -0.2198 5.5759 2.8661 34 1 0.0201 7.0412 1.8846 35 1 0.2813 3.2999 1.4280 36 1 1.4285 3.9003 0.1867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695569803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:01 Heat of formation + Delta-G solvation = 2.318138 kcal Electronic energy + Delta-G solvation = -15125.345642 eV Core-core repulsion = 12837.133238 eV Total energy + Delta-G solvation = -2288.212404 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07425 -37.21824 -34.03018 -33.17365 -31.01255 -29.22447 -28.70014 -26.07608 -23.72984 -22.64643 -21.42575 -21.20416 -18.29734 -17.19333 -16.87887 -16.30657 -15.71201 -15.15843 -14.85665 -14.73206 -14.15952 -13.83385 -13.74616 -13.28998 -13.19296 -12.79172 -12.69310 -12.48740 -12.38640 -12.15407 -12.03834 -12.00285 -11.80934 -11.58300 -11.41501 -11.19776 -10.47422 -9.32838 -8.49461 -7.81879 -5.43204 1.43582 1.46263 1.52213 2.49079 3.08627 3.25346 3.73062 3.96921 4.07708 4.27052 4.33639 4.45521 4.50235 4.58234 4.64414 4.76032 4.83545 4.92464 4.96085 5.00106 5.03219 5.10741 5.18587 5.21634 5.28279 5.40570 5.49955 5.53153 5.69507 5.84703 5.98877 6.21692 6.50150 7.20534 7.90106 8.43340 9.15590 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.010501 C = 0.009542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.918545 B = 2665.891704 C = 2933.583352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 N -0.590 5.590 4 C -0.252 4.252 5 H 0.050 0.950 6 C -0.034 4.034 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.293 1.293 11 H -0.279 1.279 12 C 0.166 3.834 13 H 0.066 0.934 14 C -0.137 4.137 15 C 0.048 3.952 16 N -0.520 5.520 17 C 0.040 3.960 18 C -0.143 4.143 19 C 0.041 3.959 20 H 0.058 0.942 21 H 0.047 0.953 22 H 0.034 0.966 23 H 0.060 0.940 24 H 0.021 0.979 25 H 0.250 0.750 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.021 0.979 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 7.237 6.706 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 N -0.310 5.310 4 C -0.383 4.383 5 H 0.067 0.933 6 C -0.231 4.231 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.058 3.942 13 H 0.084 0.916 14 C -0.177 4.177 15 C -0.081 4.081 16 N -0.245 5.245 17 C -0.088 4.088 18 C -0.200 4.200 19 C -0.088 4.088 20 H 0.077 0.923 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.499 7.006 7.133 10.964 hybrid contribution 0.673 0.211 -2.002 2.123 sum -3.826 7.218 5.131 9.647 Atomic orbital electron populations 1.22165 0.98116 1.00289 1.00323 1.20798 0.91746 0.85844 0.99809 1.44003 1.73678 1.11427 1.01904 1.18951 1.30041 0.95853 0.93434 0.93258 1.25827 0.96435 0.98475 1.02411 1.70127 1.34891 1.18000 1.33119 0.85603 0.77612 0.77498 0.81289 1.20437 1.21862 1.20522 1.21368 0.92718 0.91943 0.88130 0.91581 1.22710 0.99620 0.95839 0.99534 1.22736 0.89323 0.95593 1.00407 1.64840 1.07850 1.05766 1.46041 1.22331 0.98127 0.88822 0.99567 1.21747 0.94195 1.02128 1.01952 1.23351 0.98412 0.94453 0.92602 0.92336 0.93439 0.94670 0.92163 0.96106 0.94035 0.93582 0.92393 0.94751 0.89285 0.89392 0.96109 0.93977 0.91702 0.90445 0.90807 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.85 10.22 71.98 0.74 -5.12 16 2 C 0.14 6.81 5.87 86.38 0.51 7.32 16 3 N -0.59 -29.07 2.48 -671.36 -1.67 -30.74 16 4 C -0.25 -13.59 7.92 84.04 0.67 -12.93 16 5 H 0.05 2.70 6.49 -2.91 -0.02 2.68 16 6 C -0.03 -1.88 4.93 84.86 0.42 -1.46 16 7 N -0.92 -53.28 11.51 21.65 0.25 -53.03 16 8 Si 0.95 44.59 29.60 68.60 2.03 46.62 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 C 0.17 7.05 3.58 46.20 0.17 7.22 16 13 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 14 C -0.14 -5.61 6.54 31.47 0.21 -5.41 16 15 C 0.05 1.60 6.70 86.44 0.58 2.18 16 16 N -0.52 -17.10 5.36 -883.00 -4.73 -21.84 16 17 C 0.04 1.09 5.58 86.30 0.48 1.57 16 18 C -0.14 -3.39 9.53 71.98 0.69 -2.71 16 19 C 0.04 1.57 4.87 86.65 0.42 1.99 16 20 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.06 3.26 5.61 -2.39 -0.01 3.25 16 24 H 0.02 0.95 8.11 -2.38 -0.02 0.93 16 25 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.05 2.24 7.12 -2.38 -0.02 2.22 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.03 1.16 7.65 -2.38 -0.02 1.14 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.02 0.61 7.95 -2.38 -0.02 0.60 16 32 H 0.04 1.11 7.25 -2.39 -0.02 1.09 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 2.67 7.80 -2.39 -0.02 2.65 16 36 H 0.03 1.20 6.25 -2.39 -0.01 1.19 16 Total: -1.00 -58.60 281.65 1.76 -56.84 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.02 Total: 9.48 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.87 Total: -7.34 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -6.15 Total: -105.60 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -58.60 1.76 -56.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695569803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.158 kcal (2) G-P(sol) polarization free energy of solvation -58.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds