Wall clock time and date at job start Mon Mar 30 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47136 * 2 1 4 4 C 1.36937 * 119.99768 * 96.83753 * 3 2 1 5 5 H 1.08002 * 119.99856 * 220.99148 * 4 3 2 6 6 C 1.38811 * 120.00329 * 40.99254 * 4 3 2 7 7 N 1.31620 * 119.99817 * 15.82990 * 6 4 3 8 8 Si 1.86793 * 120.00197 * 195.83388 * 6 4 3 9 9 H 1.48502 * 109.47417 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47496 * 299.99744 * 8 6 4 11 11 H 1.48505 * 109.47038 * 59.99999 * 8 6 4 12 12 C 1.46503 * 120.00272 * 276.83739 * 3 2 1 13 13 H 1.09000 * 110.28177 * 0.67207 * 12 3 2 14 14 C 1.54260 * 110.32106 * 238.54493 * 12 3 2 15 15 C 1.54373 * 105.05938 * 241.10001 * 14 12 3 16 16 N 1.48564 * 104.59568 * 23.85890 * 15 14 12 17 17 C 1.46897 * 111.00150 * 200.96120 * 16 15 14 18 18 C 1.52996 * 109.47613 * 174.15447 * 17 16 15 19 19 C 1.48564 * 104.21989 * 320.51062 * 16 15 14 20 20 H 1.09001 * 109.47648 * 60.00009 * 1 2 3 21 21 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47412 * 299.99570 * 1 2 3 23 23 H 1.09008 * 109.47039 * 240.00218 * 2 1 3 24 24 H 1.08999 * 109.47426 * 120.00481 * 2 1 3 25 25 H 0.96999 * 120.00089 * 179.97438 * 7 6 4 26 26 H 1.08994 * 110.33042 * 0.02562 * 14 12 3 27 27 H 1.09007 * 110.32227 * 122.10915 * 14 12 3 28 28 H 1.09006 * 110.41117 * 142.63540 * 15 14 12 29 29 H 1.09005 * 110.41445 * 265.07778 * 15 14 12 30 30 H 1.09008 * 109.47041 * 294.15570 * 17 16 15 31 31 H 1.08998 * 109.47309 * 54.14944 * 17 16 15 32 32 H 1.09005 * 109.47193 * 53.34085 * 18 17 16 33 33 H 1.08994 * 109.47626 * 173.34617 * 18 17 16 34 34 H 1.09004 * 109.46986 * 293.34495 * 18 17 16 35 35 H 1.08990 * 110.41616 * 280.70567 * 19 16 15 36 36 H 1.09002 * 110.40808 * 158.25567 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3796 1.9796 1.1775 5 1 2.1120 3.0091 1.3644 6 6 3.0899 1.2631 2.1309 7 7 3.6836 0.1361 1.7997 8 14 3.2030 1.8983 3.8839 9 1 4.0108 0.9569 4.7004 10 1 3.8491 3.2354 3.8853 11 1 1.8386 2.0072 4.4599 12 6 2.1201 2.1222 -1.2597 13 1 1.7826 1.5029 -2.0907 14 6 3.5727 2.5861 -1.4925 15 6 3.4989 4.1274 -1.5395 16 7 2.2671 4.4665 -0.7814 17 6 1.7820 5.8066 -1.1373 18 6 0.4391 6.0621 -0.4503 19 6 1.2907 3.4223 -1.1856 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.1803 -0.3644 2.4658 26 1 4.2101 2.2622 -0.6698 27 1 3.9483 2.1946 -2.4379 28 1 4.3739 4.5647 -1.0584 29 1 3.4182 4.4729 -2.5702 30 1 2.5054 6.5536 -0.8103 31 1 1.6556 5.8721 -2.2180 32 1 0.5382 5.8810 0.6200 33 1 0.1363 7.0958 -0.6174 34 1 -0.3141 5.3915 -0.8640 35 1 0.8645 3.6573 -2.1607 36 1 0.5031 3.3286 -0.4379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695569806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:04 Heat of formation + Delta-G solvation = 23.399631 kcal Electronic energy + Delta-G solvation = -15296.527059 eV Core-core repulsion = 13009.228817 eV Total energy + Delta-G solvation = -2287.298241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.49231 -35.27613 -32.39788 -31.16916 -29.18655 -27.71912 -26.99086 -23.98964 -22.28042 -20.83193 -20.20296 -19.12821 -16.28288 -15.42486 -15.09842 -14.54144 -14.08285 -13.46670 -13.41049 -12.95942 -12.43532 -12.16638 -12.03956 -11.58475 -11.43179 -11.03341 -10.90891 -10.75655 -10.69364 -10.51275 -10.40103 -10.18729 -10.10156 -9.71490 -9.57944 -9.40093 -8.30247 -7.76349 -6.31503 -5.60680 -3.20160 3.49143 3.52834 3.56315 4.62462 4.63156 5.31835 5.43874 5.45533 5.52362 5.64448 5.79632 5.85451 5.95943 6.03545 6.10108 6.25634 6.34693 6.38235 6.43177 6.49112 6.56739 6.65178 6.73460 6.75494 6.94408 7.00300 7.35289 7.36413 7.61132 7.74428 7.83331 8.12515 8.79616 9.42263 10.00733 10.60804 11.41888 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.012555 C = 0.010723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.239318 B = 2229.730087 C = 2610.478384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 N -0.575 5.575 4 C -0.233 4.233 5 H 0.073 0.927 6 C 0.006 3.994 7 N -0.901 5.901 8 Si 0.896 3.104 9 H -0.294 1.294 10 H -0.282 1.282 11 H -0.285 1.285 12 C 0.171 3.829 13 H 0.051 0.949 14 C -0.134 4.134 15 C 0.041 3.959 16 N -0.493 5.493 17 C 0.040 3.960 18 C -0.147 4.147 19 C 0.028 3.972 20 H 0.031 0.969 21 H 0.032 0.968 22 H 0.048 0.952 23 H 0.016 0.984 24 H 0.092 0.908 25 H 0.251 0.749 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.021 0.979 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 6.155 -6.323 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.294 5.294 4 C -0.363 4.363 5 H 0.091 0.909 6 C -0.192 4.192 7 N -0.545 5.545 8 Si 0.726 3.274 9 H -0.221 1.221 10 H -0.208 1.208 11 H -0.212 1.212 12 C 0.062 3.938 13 H 0.069 0.931 14 C -0.174 4.174 15 C -0.088 4.088 16 N -0.217 5.217 17 C -0.088 4.088 18 C -0.204 4.204 19 C -0.102 4.102 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.035 0.965 24 H 0.110 0.890 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.639 6.038 -5.629 9.021 hybrid contribution -0.018 0.398 0.008 0.398 sum -3.657 6.435 -5.621 9.294 Atomic orbital electron populations 1.22385 1.01235 0.98543 1.00254 1.20841 0.89294 0.86751 1.01168 1.43894 1.73440 1.10702 1.01403 1.19148 1.27519 0.97617 0.92021 0.90929 1.25301 0.96600 0.98032 0.99269 1.69969 1.34695 1.16970 1.32820 0.86479 0.77455 0.78105 0.85341 1.22064 1.20802 1.21198 1.21089 0.91996 0.91210 0.89500 0.93074 1.22817 1.00649 0.92855 1.01063 1.22985 0.93862 0.97572 0.94334 1.65448 1.03748 1.00476 1.51998 1.22215 0.96967 0.92920 0.96746 1.21763 0.96445 1.00162 1.02077 1.23620 0.96167 0.93395 0.97037 0.95023 0.94913 0.93326 0.96511 0.89026 0.93945 0.88902 0.93673 0.91294 0.95706 0.91518 0.95961 0.91566 0.93123 0.92965 0.96090 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.22 37.16 0.38 -2.95 16 2 C 0.15 3.44 5.85 -4.04 -0.02 3.42 16 3 N -0.57 -14.08 2.33 -164.09 -0.38 -14.46 16 4 C -0.23 -6.27 7.94 -15.06 -0.12 -6.39 16 5 H 0.07 2.02 7.06 -52.49 -0.37 1.65 16 6 C 0.01 0.18 5.00 -17.43 -0.09 0.09 16 7 N -0.90 -26.05 11.48 55.49 0.64 -25.42 16 8 Si 0.90 22.21 29.58 -169.99 -5.03 17.18 16 9 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 C 0.17 3.62 3.58 -66.55 -0.24 3.38 16 13 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 14 C -0.13 -2.74 6.46 -25.35 -0.16 -2.90 16 15 C 0.04 0.74 6.49 -2.18 -0.01 0.72 16 16 N -0.49 -9.32 4.80 -229.97 -1.10 -10.42 16 17 C 0.04 0.62 5.66 -3.83 -0.02 0.60 16 18 C -0.15 -2.08 9.56 37.16 0.36 -1.73 16 19 C 0.03 0.53 4.33 -2.18 -0.01 0.52 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.02 0.38 8.09 -51.92 -0.42 -0.04 16 24 H 0.09 2.46 5.68 -51.93 -0.30 2.16 16 25 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.09 2.28 7.37 -51.93 -0.38 1.89 16 27 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.02 0.40 7.88 -51.93 -0.41 -0.01 16 30 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.02 0.32 7.96 -51.93 -0.41 -0.09 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.74 7.28 -51.93 -0.38 0.36 16 35 H 0.02 0.36 7.98 -51.93 -0.41 -0.05 16 36 H 0.08 1.70 7.66 -51.93 -0.40 1.30 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -28.26 282.98 -7.97 -36.23 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.41 Total: -2.14 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.06 Total: -5.24 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.85 Total: -50.30 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.26 -7.97 -36.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695569806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.632 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds