Wall clock time and date at job start Mon Mar 30 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47136 * 2 1 4 4 C 1.36937 * 119.99768 * 96.83753 * 3 2 1 5 5 H 1.08002 * 119.99856 * 220.99148 * 4 3 2 6 6 C 1.38811 * 120.00329 * 40.99254 * 4 3 2 7 7 N 1.31620 * 119.99817 * 15.82990 * 6 4 3 8 8 Si 1.86793 * 120.00197 * 195.83388 * 6 4 3 9 9 H 1.48502 * 109.47417 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47496 * 299.99744 * 8 6 4 11 11 H 1.48505 * 109.47038 * 59.99999 * 8 6 4 12 12 C 1.46503 * 120.00272 * 276.83739 * 3 2 1 13 13 H 1.09000 * 110.28177 * 0.67207 * 12 3 2 14 14 C 1.54260 * 110.32106 * 238.54493 * 12 3 2 15 15 C 1.54373 * 105.05938 * 241.10001 * 14 12 3 16 16 N 1.48564 * 104.59568 * 23.85890 * 15 14 12 17 17 C 1.46897 * 111.00150 * 200.96120 * 16 15 14 18 18 C 1.52996 * 109.47613 * 174.15447 * 17 16 15 19 19 C 1.48564 * 104.21989 * 320.51062 * 16 15 14 20 20 H 1.09001 * 109.47648 * 60.00009 * 1 2 3 21 21 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47412 * 299.99570 * 1 2 3 23 23 H 1.09008 * 109.47039 * 240.00218 * 2 1 3 24 24 H 1.08999 * 109.47426 * 120.00481 * 2 1 3 25 25 H 0.96999 * 120.00089 * 179.97438 * 7 6 4 26 26 H 1.08994 * 110.33042 * 0.02562 * 14 12 3 27 27 H 1.09007 * 110.32227 * 122.10915 * 14 12 3 28 28 H 1.09006 * 110.41117 * 142.63540 * 15 14 12 29 29 H 1.09005 * 110.41445 * 265.07778 * 15 14 12 30 30 H 1.09008 * 109.47041 * 294.15570 * 17 16 15 31 31 H 1.08998 * 109.47309 * 54.14944 * 17 16 15 32 32 H 1.09005 * 109.47193 * 53.34085 * 18 17 16 33 33 H 1.08994 * 109.47626 * 173.34617 * 18 17 16 34 34 H 1.09004 * 109.46986 * 293.34495 * 18 17 16 35 35 H 1.08990 * 110.41616 * 280.70567 * 19 16 15 36 36 H 1.09002 * 110.40808 * 158.25567 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3796 1.9796 1.1775 5 1 2.1120 3.0091 1.3644 6 6 3.0899 1.2631 2.1309 7 7 3.6836 0.1361 1.7997 8 14 3.2030 1.8983 3.8839 9 1 4.0108 0.9569 4.7004 10 1 3.8491 3.2354 3.8853 11 1 1.8386 2.0072 4.4599 12 6 2.1201 2.1222 -1.2597 13 1 1.7826 1.5029 -2.0907 14 6 3.5727 2.5861 -1.4925 15 6 3.4989 4.1274 -1.5395 16 7 2.2671 4.4665 -0.7814 17 6 1.7820 5.8066 -1.1373 18 6 0.4391 6.0621 -0.4503 19 6 1.2907 3.4223 -1.1856 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.1803 -0.3644 2.4658 26 1 4.2101 2.2622 -0.6698 27 1 3.9483 2.1946 -2.4379 28 1 4.3739 4.5647 -1.0584 29 1 3.4182 4.4729 -2.5702 30 1 2.5054 6.5536 -0.8103 31 1 1.6556 5.8721 -2.2180 32 1 0.5382 5.8810 0.6200 33 1 0.1363 7.0958 -0.6174 34 1 -0.3141 5.3915 -0.8640 35 1 0.8645 3.6573 -2.1607 36 1 0.5031 3.3286 -0.4379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695569806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:04 Heat of formation + Delta-G solvation = 6.286798 kcal Electronic energy + Delta-G solvation = -15297.269127 eV Core-core repulsion = 13009.228817 eV Total energy + Delta-G solvation = -2288.040310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03261 -37.03503 -33.95124 -33.08458 -30.82459 -29.16403 -28.72627 -25.89323 -23.69020 -22.61016 -21.64702 -20.83816 -18.17454 -17.10725 -16.65120 -16.29115 -15.77687 -15.27499 -14.88115 -14.44701 -14.01308 -13.79760 -13.57491 -13.17393 -13.05084 -12.72204 -12.64069 -12.36608 -12.33117 -12.14358 -11.99742 -11.89409 -11.67009 -11.54149 -11.34508 -11.25685 -10.38219 -9.15291 -8.31592 -7.67700 -5.30669 1.49506 1.49796 1.56325 2.59936 3.26192 3.41146 3.70525 4.01100 4.11155 4.27987 4.46739 4.49244 4.56780 4.63108 4.67274 4.73724 4.85564 4.94014 4.96376 4.99531 5.05674 5.15168 5.18926 5.23177 5.34818 5.40472 5.58413 5.66156 5.87877 5.96279 6.15728 6.40969 6.71880 7.36293 8.03587 8.56880 9.30098 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.012555 C = 0.010723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.239318 B = 2229.730087 C = 2610.478384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.144 3.856 3 N -0.588 5.588 4 C -0.220 4.220 5 H 0.063 0.937 6 C -0.044 4.044 7 N -0.929 5.929 8 Si 0.948 3.052 9 H -0.298 1.298 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.161 3.839 13 H 0.064 0.936 14 C -0.130 4.130 15 C 0.048 3.952 16 N -0.522 5.522 17 C 0.040 3.960 18 C -0.142 4.142 19 C 0.042 3.958 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.033 0.967 23 H 0.019 0.981 24 H 0.057 0.943 25 H 0.244 0.756 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 7.536 -7.632 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 N -0.309 5.309 4 C -0.351 4.351 5 H 0.081 0.919 6 C -0.239 4.239 7 N -0.575 5.575 8 Si 0.778 3.222 9 H -0.225 1.225 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.053 3.947 13 H 0.083 0.917 14 C -0.170 4.170 15 C -0.079 4.079 16 N -0.247 5.247 17 C -0.088 4.088 18 C -0.200 4.200 19 C -0.087 4.087 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.661 7.440 -6.953 11.200 hybrid contribution 0.282 -0.007 0.336 0.439 sum -4.379 7.434 -6.617 10.873 Atomic orbital electron populations 1.22164 0.98286 1.00087 1.00248 1.20773 0.91570 0.86277 0.99604 1.44059 1.73793 1.11012 1.02050 1.19159 1.25949 0.97010 0.93002 0.91944 1.25858 0.97236 0.98628 1.02186 1.70100 1.36063 1.18124 1.33239 0.85649 0.77249 0.77318 0.82018 1.22460 1.20758 1.20868 1.21329 0.92925 0.92113 0.88333 0.91749 1.22683 0.99227 0.94988 1.00091 1.22905 0.93641 0.95515 0.95885 1.65383 1.04006 1.02051 1.53245 1.22289 0.97539 0.91032 0.97933 1.21730 0.95879 1.01875 1.00494 1.23356 0.95298 0.92382 0.97678 0.93385 0.92606 0.94813 0.96293 0.92452 0.94664 0.93727 0.91679 0.91637 0.92782 0.90797 0.94178 0.93661 0.90366 0.93159 0.93528 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 10.22 71.98 0.74 -5.06 16 2 C 0.14 6.80 5.85 86.38 0.51 7.31 16 3 N -0.59 -28.85 2.33 -673.06 -1.57 -30.42 16 4 C -0.22 -11.99 7.94 84.03 0.67 -11.32 16 5 H 0.06 3.51 7.06 -2.91 -0.02 3.49 16 6 C -0.04 -2.48 5.00 84.86 0.42 -2.05 16 7 N -0.93 -55.24 11.48 21.65 0.25 -54.99 16 8 Si 0.95 46.48 29.58 68.60 2.03 48.51 16 9 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 C 0.16 6.59 3.58 45.89 0.16 6.76 16 13 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 14 C -0.13 -5.19 6.46 31.49 0.20 -4.99 16 15 C 0.05 1.65 6.49 86.45 0.56 2.21 16 16 N -0.52 -18.71 4.80 -881.48 -4.23 -22.94 16 17 C 0.04 1.12 5.66 86.30 0.49 1.60 16 18 C -0.14 -3.67 9.56 71.98 0.69 -2.98 16 19 C 0.04 1.54 4.33 86.45 0.37 1.91 16 20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.02 0.86 8.09 -2.38 -0.02 0.84 16 24 H 0.06 3.15 5.68 -2.39 -0.01 3.13 16 25 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.04 2.21 7.37 -2.39 -0.02 2.20 16 27 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.05 1.54 7.88 -2.38 -0.02 1.52 16 30 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 0.99 7.96 -2.39 -0.02 0.97 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.30 7.28 -2.38 -0.02 1.28 16 35 H 0.05 1.45 7.98 -2.39 -0.02 1.43 16 36 H 0.06 2.49 7.66 -2.39 -0.02 2.48 16 Total: -1.00 -61.02 282.98 2.30 -58.72 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.01 Total: 7.74 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 4.81 Total: -6.61 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.55 Total: -108.35 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -61.02 2.30 -58.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695569806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.007 kcal (2) G-P(sol) polarization free energy of solvation -61.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds