Wall clock time and date at job start Mon Mar 30 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46992 * 2 1 4 4 C 1.53001 * 109.46927 * 239.99782 * 2 1 3 5 5 C 1.50700 * 109.47123 * 62.46595 * 4 2 1 6 6 H 1.07999 * 119.99928 * 5.59776 * 5 4 2 7 7 C 1.37882 * 119.99630 * 185.60055 * 5 4 2 8 8 N 1.31509 * 120.00358 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99613 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47066 * 60.00283 * 9 7 5 11 11 H 1.48503 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47653 * 300.00205 * 9 7 5 13 13 N 1.46897 * 109.47185 * 120.00037 * 2 1 3 14 14 C 1.46851 * 110.99948 * 300.59261 * 13 2 1 15 15 C 1.53033 * 109.52370 * 174.16379 * 14 13 2 16 16 C 1.53116 * 109.28428 * 59.17443 * 15 14 13 17 17 N 1.46895 * 109.52391 * 182.44135 * 16 15 14 18 18 C 1.53121 * 109.15647 * 302.34671 * 16 15 14 19 19 C 1.46846 * 111.00257 * 176.37890 * 13 2 1 20 20 H 1.09001 * 109.47125 * 60.00582 * 1 2 3 21 21 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46953 * 300.00009 * 1 2 3 23 23 H 1.09001 * 109.47010 * 182.46388 * 4 2 1 24 24 H 1.08997 * 109.47518 * 302.45972 * 4 2 1 25 25 H 0.97001 * 120.00020 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46348 * 54.14147 * 14 13 2 27 27 H 1.09000 * 109.44805 * 294.16918 * 14 13 2 28 28 H 1.08999 * 109.50425 * 299.22984 * 15 14 13 29 29 H 1.09002 * 109.50074 * 179.11477 * 15 14 13 30 30 H 1.09002 * 109.52186 * 62.24747 * 16 15 14 31 31 H 1.00902 * 110.99824 * 180.02562 * 17 16 15 32 32 H 1.00905 * 110.99913 * 303.95001 * 17 16 15 33 33 H 1.09007 * 109.49788 * 177.59360 * 18 16 15 34 34 H 1.08998 * 109.50576 * 297.71097 * 18 16 15 35 35 H 1.09001 * 109.46204 * 305.85033 * 19 13 2 36 36 H 1.08993 * 109.45943 * 65.81948 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5882 0.0235 -2.4790 6 1 1.0748 0.9685 -2.3797 7 6 1.8302 -0.5016 -3.7307 8 7 2.4557 -1.6521 -3.8515 9 14 1.2695 0.4212 -5.2550 10 1 1.9208 1.7552 -5.2935 11 1 1.6478 -0.3489 -6.4670 12 1 -0.2052 0.5913 -5.2163 13 7 2.0197 -0.6925 1.1994 14 6 1.5373 -0.0348 2.4206 15 6 1.9435 -0.8627 3.6419 16 6 3.4686 -0.9943 3.6790 17 7 3.8610 -1.8369 4.8165 18 6 3.9493 -1.6379 2.3755 19 6 3.4851 -0.7875 1.1909 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1291 -0.7597 -1.2274 24 1 1.6411 -1.7354 -1.2716 25 1 2.6256 -2.0217 -4.7321 26 1 0.4512 0.0487 2.3833 27 1 1.9758 0.9604 2.4943 28 1 1.4943 -1.8535 3.5757 29 1 1.5990 -0.3661 4.5490 30 1 3.9170 -0.0063 3.7845 31 1 4.8639 -1.9382 4.8623 32 1 3.4952 -1.4692 5.6821 33 1 5.0378 -1.6953 2.3779 34 1 3.5316 -2.6410 2.2893 35 1 3.8136 -1.2508 0.2605 36 1 3.9142 0.2112 1.2704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:32 Heat of formation + Delta-G solvation = -12.159510 kcal Electronic energy + Delta-G solvation = -14724.749584 eV Core-core repulsion = 12435.909383 eV Total energy + Delta-G solvation = -2288.840202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.95879 -35.68973 -33.05948 -31.40751 -30.69078 -28.39048 -26.83061 -23.89172 -22.59177 -22.01004 -19.52014 -19.02513 -16.62589 -15.52838 -15.37717 -15.03488 -14.59849 -14.30452 -13.64507 -13.24709 -13.17209 -12.68923 -12.30560 -11.83569 -11.35814 -11.25497 -11.11006 -10.91137 -10.81632 -10.75993 -10.46543 -10.25694 -10.08101 -9.70322 -9.14980 -9.02322 -8.71404 -8.30038 -7.62001 -5.97046 -3.98577 3.34472 3.39164 3.41188 4.37764 4.47666 4.59671 4.96744 5.07998 5.37995 5.39389 5.53451 5.68548 5.82771 5.85606 5.94460 6.00511 6.07743 6.18045 6.28276 6.39090 6.40925 6.50679 6.62600 6.76611 6.98335 7.14599 7.17538 7.39157 7.60029 7.68683 7.87119 7.91231 8.12308 8.47168 9.07529 9.64211 11.14329 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057946 B = 0.006805 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.088685 B = 4113.723068 C = 4441.550314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.085 3.915 3 H 0.023 0.977 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.532 5.532 14 C 0.052 3.948 15 C -0.107 4.107 16 C 0.089 3.911 17 N -0.847 5.847 18 C -0.107 4.107 19 C 0.054 3.946 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.031 0.969 23 H 0.014 0.986 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.078 0.922 27 H 0.021 0.979 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.338 0.662 32 H 0.336 0.664 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 2.344 13.830 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.041 0.959 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.258 5.258 14 C -0.076 4.076 15 C -0.145 4.145 16 C -0.022 4.022 17 N -0.376 5.376 18 C -0.145 4.145 19 C -0.075 4.075 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.032 0.968 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.649 1.169 13.317 13.384 hybrid contribution 0.608 2.204 -0.524 2.345 sum 1.257 3.373 12.794 13.291 Atomic orbital electron populations 1.21765 0.95327 1.01654 0.99964 1.21813 0.95046 0.95053 0.90251 0.95857 1.19201 0.95878 0.96401 0.89192 1.21157 1.37406 1.06101 0.90937 0.92781 1.24980 0.95334 0.94961 0.98991 1.69956 1.41593 1.18205 1.23538 0.86693 0.79150 0.79797 0.82546 1.20378 1.21317 1.20245 1.62015 1.09170 1.52766 1.01815 1.22090 1.00588 0.94619 0.90346 1.21591 0.94528 1.01605 0.96803 1.21423 0.96024 0.93392 0.91319 1.58751 1.17004 1.55820 1.05994 1.21606 0.99375 1.00798 0.92737 1.22122 0.88266 0.97821 0.99257 0.91524 0.92614 0.95040 0.96751 0.95215 0.92978 0.90398 0.96063 0.90323 0.92633 0.95537 0.85009 0.85190 0.92408 0.90294 0.88897 0.96010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.74 37.16 0.32 -2.22 16 2 C 0.09 1.82 2.13 -67.71 -0.14 1.68 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.03 0.79 4.22 -27.88 -0.12 0.67 16 5 C -0.52 -14.49 8.27 -34.44 -0.28 -14.77 16 6 H 0.05 1.47 7.10 -52.49 -0.37 1.10 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.53 -9.98 4.53 -226.70 -1.03 -11.01 16 14 C 0.05 0.82 5.21 -3.83 -0.02 0.80 16 15 C -0.11 -1.44 5.64 -26.65 -0.15 -1.59 16 16 C 0.09 1.16 3.31 -67.59 -0.22 0.94 16 17 N -0.85 -9.24 9.25 -4.56 -0.04 -9.28 16 18 C -0.11 -1.59 5.67 -26.65 -0.15 -1.74 16 19 C 0.05 0.96 5.15 -3.84 -0.02 0.94 16 20 H 0.07 1.37 6.90 -51.93 -0.36 1.02 16 21 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.03 0.52 6.27 -51.93 -0.33 0.20 16 23 H 0.01 0.39 6.09 -51.93 -0.32 0.07 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.08 1.18 5.99 -51.93 -0.31 0.87 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.34 3.18 9.04 -39.29 -0.36 2.82 16 32 H 0.34 3.05 9.00 -39.29 -0.35 2.70 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.86 5.86 -51.93 -0.30 1.56 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 277.69 15.07 4.18 4.18 Total: -1.00 -29.63 277.69 -8.11 -37.74 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.06 Total: 1.58 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.88 Total: -13.73 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.33 Total: -46.42 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.63 -8.11 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.585 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds