Wall clock time and date at job start Mon Mar 30 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46992 * 2 1 4 4 C 1.53001 * 109.46927 * 239.99782 * 2 1 3 5 5 C 1.50700 * 109.47123 * 62.46595 * 4 2 1 6 6 H 1.07999 * 119.99928 * 5.59776 * 5 4 2 7 7 C 1.37882 * 119.99630 * 185.60055 * 5 4 2 8 8 N 1.31509 * 120.00358 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99613 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47066 * 60.00283 * 9 7 5 11 11 H 1.48503 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47653 * 300.00205 * 9 7 5 13 13 N 1.46897 * 109.47185 * 120.00037 * 2 1 3 14 14 C 1.46851 * 110.99948 * 300.59261 * 13 2 1 15 15 C 1.53033 * 109.52370 * 174.16379 * 14 13 2 16 16 C 1.53116 * 109.28428 * 59.17443 * 15 14 13 17 17 N 1.46895 * 109.52391 * 182.44135 * 16 15 14 18 18 C 1.53121 * 109.15647 * 302.34671 * 16 15 14 19 19 C 1.46846 * 111.00257 * 176.37890 * 13 2 1 20 20 H 1.09001 * 109.47125 * 60.00582 * 1 2 3 21 21 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46953 * 300.00009 * 1 2 3 23 23 H 1.09001 * 109.47010 * 182.46388 * 4 2 1 24 24 H 1.08997 * 109.47518 * 302.45972 * 4 2 1 25 25 H 0.97001 * 120.00020 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46348 * 54.14147 * 14 13 2 27 27 H 1.09000 * 109.44805 * 294.16918 * 14 13 2 28 28 H 1.08999 * 109.50425 * 299.22984 * 15 14 13 29 29 H 1.09002 * 109.50074 * 179.11477 * 15 14 13 30 30 H 1.09002 * 109.52186 * 62.24747 * 16 15 14 31 31 H 1.00902 * 110.99824 * 180.02562 * 17 16 15 32 32 H 1.00905 * 110.99913 * 303.95001 * 17 16 15 33 33 H 1.09007 * 109.49788 * 177.59360 * 18 16 15 34 34 H 1.08998 * 109.50576 * 297.71097 * 18 16 15 35 35 H 1.09001 * 109.46204 * 305.85033 * 19 13 2 36 36 H 1.08993 * 109.45943 * 65.81948 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5882 0.0235 -2.4790 6 1 1.0748 0.9685 -2.3797 7 6 1.8302 -0.5016 -3.7307 8 7 2.4557 -1.6521 -3.8515 9 14 1.2695 0.4212 -5.2550 10 1 1.9208 1.7552 -5.2935 11 1 1.6478 -0.3489 -6.4670 12 1 -0.2052 0.5913 -5.2163 13 7 2.0197 -0.6925 1.1994 14 6 1.5373 -0.0348 2.4206 15 6 1.9435 -0.8627 3.6419 16 6 3.4686 -0.9943 3.6790 17 7 3.8610 -1.8369 4.8165 18 6 3.9493 -1.6379 2.3755 19 6 3.4851 -0.7875 1.1909 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1291 -0.7597 -1.2274 24 1 1.6411 -1.7354 -1.2716 25 1 2.6256 -2.0217 -4.7321 26 1 0.4512 0.0487 2.3833 27 1 1.9758 0.9604 2.4943 28 1 1.4943 -1.8535 3.5757 29 1 1.5990 -0.3661 4.5490 30 1 3.9170 -0.0063 3.7845 31 1 4.8639 -1.9382 4.8623 32 1 3.4952 -1.4692 5.6821 33 1 5.0378 -1.6953 2.3779 34 1 3.5316 -2.6410 2.2893 35 1 3.8136 -1.2508 0.2605 36 1 3.9142 0.2112 1.2704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:32 Heat of formation + Delta-G solvation = -33.744827 kcal Electronic energy + Delta-G solvation = -14725.685594 eV Core-core repulsion = 12435.909383 eV Total energy + Delta-G solvation = -2289.776211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32342 -37.10162 -34.95606 -33.00540 -31.99123 -29.82647 -28.62173 -25.72406 -23.92883 -23.48209 -20.94391 -20.52636 -18.67909 -16.90252 -16.61172 -16.39687 -16.21538 -15.73850 -15.20435 -14.71698 -14.57103 -14.20899 -13.88607 -13.54086 -13.10141 -12.93560 -12.66286 -12.52784 -12.36866 -12.20881 -12.07187 -11.83620 -11.49699 -11.44387 -11.13641 -10.84831 -10.48550 -9.59243 -9.12399 -8.17154 -6.26976 1.40560 1.43442 1.51171 2.41555 3.05532 3.16200 3.54446 3.83429 3.91211 4.24421 4.27805 4.30974 4.38105 4.54084 4.61433 4.64547 4.71288 4.88424 4.92857 4.98822 5.04889 5.17889 5.24222 5.25495 5.40558 5.43860 5.50893 5.73616 5.80619 6.14689 6.27612 6.40491 6.41211 6.66433 6.88804 7.40982 8.94940 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057946 B = 0.006805 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.088685 B = 4113.723068 C = 4441.550314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.094 3.906 3 H 0.018 0.982 4 C 0.040 3.960 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.544 5.544 14 C 0.051 3.949 15 C -0.101 4.101 16 C 0.096 3.904 17 N -0.849 5.849 18 C -0.100 4.100 19 C 0.055 3.945 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.066 0.934 23 H -0.009 1.009 24 H -0.007 1.007 25 H 0.262 0.738 26 H 0.085 0.915 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.348 0.652 32 H 0.350 0.650 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 3.663 15.199 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.014 4.014 3 H 0.036 0.964 4 C 0.003 3.997 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.269 5.269 14 C -0.077 4.077 15 C -0.139 4.139 16 C -0.015 4.015 17 N -0.380 5.380 18 C -0.138 4.138 19 C -0.073 4.073 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.009 0.991 24 H 0.011 0.989 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.075 2.497 14.721 14.931 hybrid contribution 0.827 1.757 -0.903 2.142 sum 0.902 4.254 13.817 14.485 Atomic orbital electron populations 1.21670 0.93811 1.01344 1.01094 1.21539 0.96178 0.94014 0.89623 0.96377 1.19018 0.94307 0.94854 0.91570 1.21554 1.37240 1.06462 0.91911 0.92080 1.25926 0.95299 0.95804 1.02599 1.70106 1.42888 1.19974 1.24401 0.85544 0.79133 0.78554 0.78071 1.19307 1.21010 1.19061 1.61970 1.09683 1.53087 1.02197 1.22204 1.00984 0.95063 0.89438 1.21548 0.94797 1.00738 0.96831 1.21261 0.95715 0.93724 0.90841 1.58645 1.18012 1.55372 1.06008 1.21518 1.00234 0.99263 0.92797 1.22051 0.87979 0.98163 0.99129 0.92734 0.93603 0.91504 0.99060 0.98865 0.92891 0.89670 0.95415 0.91684 0.89658 0.94764 0.83873 0.83598 0.90878 0.92027 0.92438 0.95758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 8.74 71.98 0.63 -4.08 16 2 C 0.09 4.07 2.13 44.92 0.10 4.16 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.04 2.16 4.22 29.85 0.13 2.28 16 5 C -0.53 -30.46 8.27 25.60 0.21 -30.25 16 6 H 0.06 3.33 7.10 -2.91 -0.02 3.31 16 7 C 0.00 0.08 5.46 84.66 0.46 0.54 16 8 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 9 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.54 -20.38 4.53 -871.13 -3.94 -24.32 16 14 C 0.05 1.49 5.21 86.32 0.45 1.94 16 15 C -0.10 -2.45 5.64 30.64 0.17 -2.27 16 16 C 0.10 2.26 3.31 45.00 0.15 2.40 16 17 N -0.85 -16.13 9.25 -168.36 -1.56 -17.69 16 18 C -0.10 -2.90 5.67 30.65 0.17 -2.72 16 19 C 0.06 2.00 5.15 86.33 0.44 2.45 16 20 H 0.05 2.22 6.90 -2.39 -0.02 2.20 16 21 H 0.04 1.83 8.14 -2.38 -0.02 1.82 16 22 H 0.07 2.09 6.27 -2.39 -0.01 2.07 16 23 H -0.01 -0.51 6.09 -2.39 -0.01 -0.52 16 24 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.09 2.34 5.99 -2.39 -0.01 2.33 16 27 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.35 5.59 9.04 -89.69 -0.81 4.78 16 32 H 0.35 5.16 9.00 -89.69 -0.81 4.36 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 2.46 5.86 -2.39 -0.01 2.45 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -64.90 277.69 -0.83 -65.73 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -0.56 Total: 12.64 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 2.91 Total: -25.54 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -5.21 Total: -99.44 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.90 -0.83 -65.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.986 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds