Wall clock time and date at job start Mon Mar 30 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47254 * 2 1 4 4 C 1.53005 * 109.46996 * 120.00521 * 2 1 3 5 5 C 1.50696 * 109.47012 * 183.56952 * 4 2 1 6 6 H 1.07997 * 120.00265 * 5.08635 * 5 4 2 7 7 C 1.37880 * 119.99893 * 185.08451 * 5 4 2 8 8 N 1.31518 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47355 * 89.99953 * 9 7 5 11 11 H 1.48502 * 109.47113 * 209.99742 * 9 7 5 12 12 H 1.48503 * 109.47399 * 329.99696 * 9 7 5 13 13 N 1.46901 * 109.47005 * 240.00289 * 2 1 3 14 14 C 1.46851 * 110.99737 * 308.74876 * 13 2 1 15 15 C 1.53042 * 109.52142 * 185.83917 * 14 13 2 16 16 C 1.53121 * 109.27851 * 300.82400 * 15 14 13 17 17 N 1.46895 * 109.52350 * 177.56168 * 16 15 14 18 18 C 1.53120 * 109.16274 * 57.65013 * 16 15 14 19 19 C 1.46847 * 111.00108 * 72.95678 * 13 2 1 20 20 H 1.09009 * 109.47217 * 59.99316 * 1 2 3 21 21 H 1.08992 * 109.47852 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47306 * 300.00012 * 1 2 3 23 23 H 1.09002 * 109.46890 * 303.57620 * 4 2 1 24 24 H 1.09000 * 109.46825 * 63.57348 * 4 2 1 25 25 H 0.96993 * 119.99571 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.46509 * 65.82469 * 14 13 2 27 27 H 1.08994 * 109.46363 * 305.85093 * 14 13 2 28 28 H 1.09001 * 109.50318 * 60.75868 * 15 14 13 29 29 H 1.08997 * 109.50549 * 180.87692 * 15 14 13 30 30 H 1.09002 * 109.51612 * 297.74641 * 16 15 14 31 31 H 1.00898 * 111.00490 * 179.97438 * 17 16 15 32 32 H 1.00898 * 110.99901 * 303.94561 * 17 16 15 33 33 H 1.09000 * 109.50160 * 182.40418 * 18 16 15 34 34 H 1.09001 * 109.49769 * 62.29044 * 18 16 15 35 35 H 1.09003 * 109.46317 * 294.17729 * 19 13 2 36 36 H 1.09002 * 109.46178 * 54.14707 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5443 -0.6453 1.2943 6 1 4.0780 -0.0647 0.5564 7 6 4.2394 -1.3168 2.2776 8 7 3.5895 -2.0234 3.1765 9 14 6.1041 -1.2218 2.3338 10 1 6.5160 -0.0703 3.1761 11 1 6.6465 -2.4774 2.9124 12 1 6.6324 -1.0424 0.9576 13 7 2.0196 -0.6924 -1.1995 14 6 1.3860 -2.0095 -1.3423 15 6 2.0232 -2.7592 -2.5145 16 6 1.8401 -1.9422 -3.7966 17 7 2.5005 -2.6288 -4.9147 18 6 2.4662 -0.5581 -3.6042 19 6 1.8162 0.1277 -2.4005 20 1 -0.3634 0.5140 -0.8900 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6252 -0.2459 2.1381 24 1 1.7298 -1.7659 1.2176 25 1 4.0786 -2.4961 3.8679 26 1 0.3199 -1.8813 -1.5297 27 1 1.5272 -2.5818 -0.4255 28 1 3.0867 -2.8999 -2.3215 29 1 1.5421 -3.7304 -2.6301 30 1 0.7768 -1.8344 -4.0110 31 1 2.3931 -2.1087 -5.7726 32 1 3.4748 -2.7952 -4.7121 33 1 2.3017 0.0431 -4.4984 34 1 3.5367 -0.6643 -3.4284 35 1 0.7481 0.2459 -2.5829 36 1 2.2698 1.1077 -2.2522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:35 Heat of formation + Delta-G solvation = -12.030735 kcal Electronic energy + Delta-G solvation = -14997.472760 eV Core-core repulsion = 12708.638142 eV Total energy + Delta-G solvation = -2288.834617 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.05507 -35.74979 -32.82719 -31.29095 -30.48194 -28.01872 -27.23214 -23.44838 -22.98261 -22.13594 -19.89163 -18.69307 -16.15499 -15.67257 -15.63205 -14.60940 -14.51467 -14.08400 -13.61413 -13.29868 -13.21917 -12.54038 -12.08293 -11.90985 -11.69586 -11.42565 -11.13210 -10.86907 -10.79115 -10.57895 -10.52313 -10.32814 -10.03000 -9.89471 -9.14151 -8.93820 -8.58418 -8.23588 -7.40554 -5.86479 -3.83761 3.39821 3.46040 3.50929 4.54063 4.58701 4.65441 5.07597 5.11492 5.39088 5.50612 5.57212 5.71445 5.79225 5.85325 5.90353 5.97401 6.05870 6.08435 6.17084 6.27239 6.40552 6.46403 6.61889 6.66830 6.76994 7.02684 7.20393 7.47836 7.57808 7.72111 7.96343 8.07132 8.15176 8.60800 9.21319 9.77340 11.25623 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.009481 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.443773 B = 2952.503363 C = 3410.994146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.067 0.933 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.509 5.509 14 C 0.058 3.942 15 C -0.107 4.107 16 C 0.090 3.910 17 N -0.847 5.847 18 C -0.147 4.147 19 C 0.057 3.943 20 H 0.038 0.962 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.014 0.986 24 H 0.023 0.977 25 H 0.257 0.743 26 H 0.023 0.977 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.335 0.665 32 H 0.340 0.660 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 1.840 -12.354 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.525 4.525 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.232 5.232 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.021 4.021 17 N -0.374 5.374 18 C -0.187 4.187 19 C -0.072 4.072 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.184 1.046 -12.017 12.768 hybrid contribution 0.773 1.062 -0.033 1.314 sum -3.411 2.108 -12.050 12.699 Atomic orbital electron populations 1.22522 0.99793 1.01388 1.00528 1.21908 0.90029 0.98144 0.92058 0.91519 1.19192 0.96327 0.95556 0.89638 1.21134 0.91597 1.28797 1.11003 0.92364 1.24993 0.97961 0.95897 0.96046 1.69962 1.35109 1.32986 1.16475 0.86644 0.86531 0.77083 0.78003 1.21069 1.21563 1.19982 1.62034 1.57797 1.02207 1.01205 1.22058 0.94614 0.91377 0.98993 1.21591 1.02365 0.97861 0.92708 1.21523 0.97893 0.91512 0.91221 1.58968 1.20125 1.53207 1.05129 1.22407 1.01570 0.97322 0.97383 1.21975 0.97341 0.96954 0.90903 0.94321 0.92723 0.92605 0.96742 0.95904 0.93355 0.95846 0.89374 0.91074 0.91620 0.91045 0.85359 0.84748 0.92676 0.91159 0.95930 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.40 37.16 0.31 -2.88 16 2 C 0.09 1.77 2.26 -67.71 -0.15 1.62 16 3 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 4 C 0.03 0.76 4.40 -27.88 -0.12 0.64 16 5 C -0.49 -13.72 8.80 -34.44 -0.30 -14.02 16 6 H 0.06 1.64 7.75 -52.49 -0.41 1.24 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.51 -9.71 4.26 -226.69 -0.97 -10.68 16 14 C 0.06 1.04 4.47 -3.83 -0.02 1.02 16 15 C -0.11 -1.68 5.64 -26.65 -0.15 -1.83 16 16 C 0.09 1.21 3.32 -67.59 -0.22 0.99 16 17 N -0.85 -9.93 9.26 -4.56 -0.04 -9.97 16 18 C -0.15 -2.01 5.67 -26.65 -0.15 -2.16 16 19 C 0.06 0.91 5.18 -3.84 -0.02 0.89 16 20 H 0.04 0.60 6.93 -51.92 -0.36 0.24 16 21 H 0.05 0.95 6.44 -51.93 -0.33 0.61 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.62 6.39 -51.93 -0.33 0.29 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.39 6.57 -51.93 -0.34 0.05 16 27 H 0.09 1.82 6.28 -51.93 -0.33 1.49 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.33 3.26 9.04 -39.29 -0.36 2.91 16 32 H 0.34 3.85 8.98 -39.29 -0.35 3.50 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.34 6.98 -51.93 -0.36 -0.02 16 36 H 0.07 1.06 7.98 -51.93 -0.41 0.64 16 LS Contribution 277.83 15.07 4.19 4.19 Total: -1.00 -29.75 277.83 -8.12 -37.88 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.09 Total: 2.43 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.93 Total: -14.37 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.27 Total: -47.30 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.75 -8.12 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.844 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds