Wall clock time and date at job start Mon Mar 30 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47254 * 2 1 4 4 C 1.53005 * 109.46996 * 120.00521 * 2 1 3 5 5 C 1.50696 * 109.47012 * 183.56952 * 4 2 1 6 6 H 1.07997 * 120.00265 * 5.08635 * 5 4 2 7 7 C 1.37880 * 119.99893 * 185.08451 * 5 4 2 8 8 N 1.31518 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47355 * 89.99953 * 9 7 5 11 11 H 1.48502 * 109.47113 * 209.99742 * 9 7 5 12 12 H 1.48503 * 109.47399 * 329.99696 * 9 7 5 13 13 N 1.46901 * 109.47005 * 240.00289 * 2 1 3 14 14 C 1.46851 * 110.99737 * 308.74876 * 13 2 1 15 15 C 1.53042 * 109.52142 * 185.83917 * 14 13 2 16 16 C 1.53121 * 109.27851 * 300.82400 * 15 14 13 17 17 N 1.46895 * 109.52350 * 177.56168 * 16 15 14 18 18 C 1.53120 * 109.16274 * 57.65013 * 16 15 14 19 19 C 1.46847 * 111.00108 * 72.95678 * 13 2 1 20 20 H 1.09009 * 109.47217 * 59.99316 * 1 2 3 21 21 H 1.08992 * 109.47852 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47306 * 300.00012 * 1 2 3 23 23 H 1.09002 * 109.46890 * 303.57620 * 4 2 1 24 24 H 1.09000 * 109.46825 * 63.57348 * 4 2 1 25 25 H 0.96993 * 119.99571 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.46509 * 65.82469 * 14 13 2 27 27 H 1.08994 * 109.46363 * 305.85093 * 14 13 2 28 28 H 1.09001 * 109.50318 * 60.75868 * 15 14 13 29 29 H 1.08997 * 109.50549 * 180.87692 * 15 14 13 30 30 H 1.09002 * 109.51612 * 297.74641 * 16 15 14 31 31 H 1.00898 * 111.00490 * 179.97438 * 17 16 15 32 32 H 1.00898 * 110.99901 * 303.94561 * 17 16 15 33 33 H 1.09000 * 109.50160 * 182.40418 * 18 16 15 34 34 H 1.09001 * 109.49769 * 62.29044 * 18 16 15 35 35 H 1.09003 * 109.46317 * 294.17729 * 19 13 2 36 36 H 1.09002 * 109.46178 * 54.14707 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5443 -0.6453 1.2943 6 1 4.0780 -0.0647 0.5564 7 6 4.2394 -1.3168 2.2776 8 7 3.5895 -2.0234 3.1765 9 14 6.1041 -1.2218 2.3338 10 1 6.5160 -0.0703 3.1761 11 1 6.6465 -2.4774 2.9124 12 1 6.6324 -1.0424 0.9576 13 7 2.0196 -0.6924 -1.1995 14 6 1.3860 -2.0095 -1.3423 15 6 2.0232 -2.7592 -2.5145 16 6 1.8401 -1.9422 -3.7966 17 7 2.5005 -2.6288 -4.9147 18 6 2.4662 -0.5581 -3.6042 19 6 1.8162 0.1277 -2.4005 20 1 -0.3634 0.5140 -0.8900 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6252 -0.2459 2.1381 24 1 1.7298 -1.7659 1.2176 25 1 4.0786 -2.4961 3.8679 26 1 0.3199 -1.8813 -1.5297 27 1 1.5272 -2.5818 -0.4255 28 1 3.0867 -2.8999 -2.3215 29 1 1.5421 -3.7304 -2.6301 30 1 0.7768 -1.8344 -4.0110 31 1 2.3931 -2.1087 -5.7726 32 1 3.4748 -2.7952 -4.7121 33 1 2.3017 0.0431 -4.4984 34 1 3.5367 -0.6643 -3.4284 35 1 0.7481 0.2459 -2.5829 36 1 2.2698 1.1077 -2.2522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:35 Heat of formation + Delta-G solvation = -33.429743 kcal Electronic energy + Delta-G solvation = -14998.400690 eV Core-core repulsion = 12708.638142 eV Total energy + Delta-G solvation = -2289.762548 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41767 -37.11453 -34.82143 -32.81447 -31.76446 -29.57932 -28.88491 -25.28068 -24.38821 -23.53846 -21.25932 -20.15483 -18.35297 -17.09631 -16.69276 -16.50735 -15.87842 -15.51771 -14.97727 -14.72171 -14.52550 -14.10086 -13.77163 -13.54173 -13.22170 -12.99361 -12.72364 -12.53470 -12.41861 -12.26423 -11.99179 -11.81743 -11.59316 -11.41496 -11.08592 -10.88732 -10.47365 -9.55488 -8.85506 -8.09504 -6.13920 1.40703 1.41769 1.53050 2.47239 3.12135 3.28140 3.63219 3.90470 3.95724 4.18147 4.24967 4.37932 4.44971 4.47446 4.53733 4.65530 4.77336 4.88154 4.90277 4.98120 5.07778 5.15747 5.21034 5.22673 5.29503 5.46424 5.51114 5.70655 5.90150 6.24360 6.34328 6.50435 6.56647 6.66078 6.99374 7.51331 9.02629 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.009481 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.443773 B = 2952.503363 C = 3410.994146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.496 4.496 6 H 0.055 0.945 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.531 5.531 14 C 0.063 3.937 15 C -0.102 4.102 16 C 0.100 3.900 17 N -0.846 5.846 18 C -0.139 4.139 19 C 0.057 3.943 20 H 0.065 0.935 21 H 0.051 0.949 22 H 0.056 0.944 23 H -0.011 1.011 24 H -0.002 1.002 25 H 0.258 0.742 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.350 0.650 32 H 0.343 0.657 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 2.556 -14.473 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 H 0.081 0.919 4 C -0.002 4.002 5 C -0.535 4.535 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.256 5.256 14 C -0.065 4.065 15 C -0.140 4.140 16 C -0.012 4.012 17 N -0.376 5.376 18 C -0.179 4.179 19 C -0.072 4.072 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.007 0.993 24 H 0.016 0.984 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.079 1.775 -14.164 14.846 hybrid contribution 0.720 0.832 0.625 1.265 sum -3.359 2.607 -13.539 14.191 Atomic orbital electron populations 1.22379 0.97207 1.01641 1.01940 1.21610 0.92081 0.97023 0.90748 0.91860 1.19054 0.95214 0.94458 0.91452 1.21447 0.93070 1.28311 1.10639 0.92673 1.25844 1.02878 0.95652 0.95771 1.70094 1.36986 1.33969 1.17226 0.85583 0.80697 0.77261 0.78282 1.20134 1.21259 1.19249 1.61910 1.58644 1.02988 1.02024 1.21942 0.95693 0.90731 0.98156 1.21519 1.00790 0.98424 0.93310 1.21359 0.98520 0.90892 0.90425 1.58905 1.20294 1.53168 1.05185 1.22373 1.00353 0.97677 0.97501 1.22059 0.98559 0.96549 0.90025 0.91597 0.93025 0.92450 0.99264 0.98396 0.93311 0.94322 0.93294 0.93122 0.90967 0.90208 0.83663 0.84463 0.89716 0.92642 0.94379 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 8.40 71.98 0.60 -5.21 16 2 C 0.09 3.85 2.26 44.92 0.10 3.95 16 3 H 0.06 2.62 7.93 -2.39 -0.02 2.60 16 4 C 0.04 1.87 4.40 29.85 0.13 2.00 16 5 C -0.50 -28.56 8.80 25.60 0.23 -28.34 16 6 H 0.06 3.14 7.75 -2.91 -0.02 3.12 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -58.42 13.29 21.45 0.28 -58.13 16 9 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 13 N -0.53 -19.99 4.26 -871.11 -3.71 -23.70 16 14 C 0.06 2.25 4.47 86.33 0.39 2.64 16 15 C -0.10 -3.12 5.64 30.65 0.17 -2.95 16 16 C 0.10 2.42 3.32 45.00 0.15 2.57 16 17 N -0.85 -17.46 9.26 -168.35 -1.56 -19.02 16 18 C -0.14 -3.40 5.67 30.65 0.17 -3.23 16 19 C 0.06 1.65 5.18 86.32 0.45 2.10 16 20 H 0.07 1.86 6.93 -2.38 -0.02 1.84 16 21 H 0.05 1.75 6.44 -2.39 -0.02 1.74 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H 0.00 -0.13 6.39 -2.39 -0.02 -0.14 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.04 1.25 6.57 -2.39 -0.02 1.23 16 27 H 0.05 2.11 6.28 -2.39 -0.02 2.09 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.35 5.59 9.04 -89.70 -0.81 4.78 16 32 H 0.34 6.99 8.98 -89.70 -0.81 6.18 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.01 6.98 -2.39 -0.02 0.99 16 36 H 0.07 1.95 7.98 -2.39 -0.02 1.93 16 Total: -1.00 -64.52 277.83 -0.66 -65.18 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.56 Total: 13.98 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 2.85 Total: -26.34 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -4.98 Total: -100.86 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -64.52 -0.66 -65.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.750 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds