Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47280 * 2 1 4 4 C 1.52995 * 109.46708 * 239.99651 * 2 1 3 5 5 C 1.50706 * 109.47022 * 175.06820 * 4 2 1 6 6 H 1.08001 * 120.00007 * 354.99216 * 5 4 2 7 7 C 1.37875 * 120.00200 * 175.26577 * 5 4 2 8 8 N 1.31509 * 119.99905 * 359.72822 * 7 5 4 9 9 Si 1.86801 * 120.00015 * 179.72079 * 7 5 4 10 10 H 1.48497 * 109.47155 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46640 * 120.00190 * 9 7 5 12 12 H 1.48497 * 109.47291 * 240.00080 * 9 7 5 13 13 N 1.46907 * 109.46720 * 120.00104 * 2 1 3 14 14 C 1.48527 * 111.00126 * 305.81577 * 13 2 1 15 15 C 1.54935 * 103.22918 * 159.72517 * 14 13 2 16 16 H 1.08995 * 110.87808 * 81.01060 * 15 14 13 17 17 C 1.52994 * 110.72505 * 204.23083 * 15 14 13 18 18 C 1.54595 * 102.91911 * 322.58353 * 15 14 13 19 19 H 1.08998 * 110.39495 * 140.91298 * 18 15 14 20 20 N 1.46902 * 110.31186 * 263.04259 * 18 15 14 21 21 C 1.47899 * 111.00084 * 63.21229 * 13 2 1 22 22 H 1.09002 * 109.47181 * 306.73532 * 1 2 3 23 23 H 1.08994 * 109.46851 * 66.72902 * 1 2 3 24 24 H 1.08998 * 109.47460 * 186.73369 * 1 2 3 25 25 H 1.09002 * 109.47235 * 55.07299 * 4 2 1 26 26 H 1.09004 * 109.47648 * 295.06419 * 4 2 1 27 27 H 0.97001 * 120.00216 * 179.97438 * 8 7 5 28 28 H 1.09004 * 110.66907 * 278.16026 * 14 13 2 29 29 H 1.09004 * 110.66728 * 41.28442 * 14 13 2 30 30 H 1.08996 * 109.47489 * 173.50200 * 17 15 14 31 31 H 1.09004 * 109.47118 * 293.49832 * 17 15 14 32 32 H 1.09001 * 109.47634 * 53.49634 * 17 15 14 33 33 H 1.00898 * 111.00247 * 177.17111 * 20 18 15 34 34 H 1.00898 * 110.99415 * 301.12361 * 20 18 15 35 35 H 1.08996 * 109.92113 * 333.50852 * 21 13 2 36 36 H 1.09003 * 109.91599 * 94.80290 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5420 -0.6165 -1.3119 6 1 4.0726 -0.0208 -0.5838 7 6 4.2385 -1.2764 -2.3020 8 7 3.5924 -2.0018 -3.1885 9 14 6.0997 -1.1401 -2.3843 10 1 6.5817 -0.2716 -1.2804 11 1 6.7013 -2.4911 -2.2495 12 1 6.4956 -0.5497 -3.6881 13 7 2.0196 -0.6926 1.1995 14 6 1.4320 -0.1050 2.4305 15 6 1.6121 -1.2295 3.4810 16 1 2.6250 -1.2265 3.8835 17 6 0.5843 -1.0894 4.6057 18 6 1.3533 -2.5138 2.6604 19 1 2.0416 -3.3030 2.9628 20 7 -0.0367 -2.9572 2.8320 21 6 1.6096 -2.1136 1.1956 22 1 -0.3634 0.6147 0.8236 23 1 -0.3633 0.4060 -0.9440 24 1 -0.3634 -1.0205 0.1205 25 1 1.6063 -0.2610 -2.1370 26 1 1.7506 -1.7714 -1.2061 27 1 4.0823 -2.4658 -3.8854 28 1 1.9779 0.7904 2.7280 29 1 0.3753 0.1187 2.2836 30 1 0.6525 -1.9511 5.2697 31 1 0.7852 -0.1789 5.1703 32 1 -0.4172 -1.0384 4.1784 33 1 -0.2300 -3.7688 2.2645 34 1 -0.2411 -3.1381 3.8033 35 1 0.6969 -2.2351 0.6123 36 1 2.4059 -2.7287 0.7765 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = 1.604777 kcal Electronic energy + Delta-G solvation = -15041.350912 eV Core-core repulsion = 12753.107575 eV Total energy + Delta-G solvation = -2288.243337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25950 -35.34650 -32.63175 -31.55947 -30.09439 -27.56068 -26.54599 -25.19307 -23.01249 -21.47135 -19.35764 -18.31195 -16.29453 -16.00737 -15.42722 -15.27608 -14.38221 -13.73389 -13.58795 -13.21661 -12.58018 -12.47264 -12.11564 -11.72292 -11.66794 -11.24377 -11.02404 -10.97037 -10.73091 -10.53765 -10.48812 -10.34376 -10.27161 -9.82397 -9.04842 -8.96374 -8.51205 -8.23903 -7.42274 -5.86428 -3.84200 3.39477 3.46779 3.53134 4.55978 4.59216 4.84154 4.96349 5.07266 5.32726 5.50895 5.62974 5.74785 5.78442 5.89261 5.93036 6.04729 6.13812 6.15734 6.18570 6.27359 6.47631 6.47951 6.63772 6.75245 6.81923 7.06194 7.32107 7.53963 7.58426 7.74723 7.88865 8.07147 8.16712 8.61256 9.22306 9.77468 11.25532 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039081 B = 0.008415 C = 0.008066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.285473 B = 3326.730467 C = 3470.605280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.069 0.931 4 C 0.027 3.973 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.487 5.487 14 C 0.034 3.966 15 C -0.090 4.090 16 H 0.076 0.924 17 C -0.138 4.138 18 C 0.078 3.922 19 H 0.038 0.962 20 N -0.842 5.842 21 C 0.048 3.952 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.014 0.986 26 H 0.022 0.978 27 H 0.256 0.744 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.338 0.662 34 H 0.336 0.664 35 H 0.057 0.943 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 -0.274 12.695 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 H 0.087 0.913 4 C -0.010 4.010 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.210 5.210 14 C -0.094 4.094 15 C -0.109 4.109 16 H 0.095 0.905 17 C -0.196 4.196 18 C -0.033 4.033 19 H 0.056 0.944 20 N -0.373 5.373 21 C -0.080 4.080 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.054 0.395 12.227 13.650 hybrid contribution 0.609 -1.008 0.138 1.185 sum -5.445 -0.612 12.365 13.525 Atomic orbital electron populations 1.22520 0.99616 1.01451 1.00676 1.22005 0.90252 0.98620 0.92295 0.91316 1.19232 0.96305 0.95588 0.89880 1.21237 0.91839 1.28462 1.11276 0.92136 1.25006 0.98037 0.95847 0.96031 1.69977 1.35103 1.32750 1.16697 0.86581 0.86461 0.77604 0.77625 1.19745 1.21365 1.21385 1.65000 1.53741 1.01183 1.01113 1.23326 0.98334 0.96861 0.90899 1.22083 0.99042 0.94786 0.95016 0.90514 1.21661 1.00105 1.00490 0.97371 1.22275 0.88095 0.96020 0.96929 0.94418 1.58923 1.23733 1.41661 1.12996 1.22845 1.00230 0.91582 0.93391 0.93790 0.92790 0.92475 0.96751 0.95937 0.93418 0.91384 0.93156 0.93526 0.93161 0.91330 0.84939 0.85090 0.92496 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.37 37.16 0.31 -3.06 16 2 C 0.08 1.64 2.46 -67.71 -0.17 1.47 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 4 C 0.03 0.70 4.26 -27.88 -0.12 0.59 16 5 C -0.49 -14.02 8.83 -34.44 -0.30 -14.33 16 6 H 0.06 1.75 7.75 -52.49 -0.41 1.34 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 9 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.49 -9.74 5.06 -222.50 -1.13 -10.87 16 14 C 0.03 0.55 5.79 -1.90 -0.01 0.54 16 15 C -0.09 -1.27 3.64 -88.76 -0.32 -1.59 16 16 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.14 -1.56 8.03 37.15 0.30 -1.26 16 18 C 0.08 1.16 4.04 -66.35 -0.27 0.89 16 19 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 20 N -0.84 -10.36 8.23 -3.52 -0.03 -10.39 16 21 C 0.05 0.90 4.84 -2.76 -0.01 0.89 16 22 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.06 5.97 -51.93 -0.31 0.75 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.02 0.62 6.69 -51.93 -0.35 0.27 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.82 5.46 -51.93 -0.28 0.54 16 30 H 0.05 0.45 7.71 -51.93 -0.40 0.05 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.81 7.32 -51.93 -0.38 0.43 16 33 H 0.34 3.88 9.06 -39.29 -0.36 3.53 16 34 H 0.34 3.43 7.29 -39.29 -0.29 3.14 16 35 H 0.06 1.11 5.08 -51.93 -0.26 0.85 16 36 H 0.08 1.71 8.11 -51.93 -0.42 1.29 16 LS Contribution 275.24 15.07 4.15 4.15 Total: -1.00 -30.34 275.24 -7.86 -38.21 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.88 Total: 2.91 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.69 Total: -14.49 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.42 Total: -48.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.34 -7.86 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.813 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds