Wall clock time and date at job start Mon Mar 30 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47363 * 2 1 4 4 C 1.53001 * 109.47095 * 120.00638 * 2 1 3 5 5 C 1.50696 * 109.46857 * 294.51330 * 4 2 1 6 6 H 1.07993 * 120.00261 * 4.41253 * 5 4 2 7 7 C 1.37882 * 120.00070 * 184.40822 * 5 4 2 8 8 N 1.31519 * 119.99902 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00338 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46725 * 90.00178 * 9 7 5 11 11 H 1.48500 * 109.47272 * 210.00381 * 9 7 5 12 12 H 1.48499 * 109.46846 * 330.00456 * 9 7 5 13 13 N 1.46907 * 109.47256 * 240.00214 * 2 1 3 14 14 C 1.48532 * 111.00054 * 181.60347 * 13 2 1 15 15 C 1.54940 * 103.22511 * 159.72437 * 14 13 2 16 16 H 1.09000 * 110.87496 * 81.01303 * 15 14 13 17 17 C 1.53002 * 110.72303 * 204.22729 * 15 14 13 18 18 C 1.54599 * 102.92201 * 322.58228 * 15 14 13 19 19 H 1.08999 * 110.30823 * 263.04372 * 18 15 14 20 20 N 1.46900 * 110.30819 * 140.87602 * 18 15 14 21 21 C 1.47907 * 111.00010 * 299.00265 * 13 2 1 22 22 H 1.09000 * 109.47408 * 299.99346 * 1 2 3 23 23 H 1.09001 * 109.47347 * 59.99617 * 1 2 3 24 24 H 1.09007 * 109.47312 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47400 * 54.51667 * 4 2 1 26 26 H 1.09000 * 109.47088 * 174.51453 * 4 2 1 27 27 H 0.96997 * 120.00309 * 179.97438 * 8 7 5 28 28 H 1.09003 * 110.66629 * 278.15684 * 14 13 2 29 29 H 1.08999 * 110.66837 * 41.28957 * 14 13 2 30 30 H 1.09001 * 109.47333 * 173.50096 * 17 15 14 31 31 H 1.08997 * 109.47097 * 293.50083 * 17 15 14 32 32 H 1.09001 * 109.46817 * 53.49955 * 17 15 14 33 33 H 1.00904 * 110.99611 * 182.83644 * 20 18 15 34 34 H 1.00903 * 111.00117 * 306.78153 * 20 18 15 35 35 H 1.08998 * 109.91115 * 333.50524 * 21 13 2 36 36 H 1.08991 * 109.91761 * 94.80153 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6516 0.0630 2.4759 6 1 1.0361 0.9452 2.3803 7 6 2.0820 -0.3457 3.7204 8 7 2.8319 -1.4198 3.8368 9 14 1.6012 0.6270 5.2410 10 1 0.3239 0.0982 5.7833 11 1 2.6661 0.4984 6.2680 12 1 1.4314 2.0574 4.8803 13 7 2.0197 -0.6925 -1.1995 14 6 3.5039 -0.7460 -1.2146 15 6 3.8068 -1.9085 -2.1931 16 1 3.7424 -1.5719 -3.2278 17 6 5.1832 -2.5124 -1.9069 18 6 2.6866 -2.9263 -1.8780 19 1 3.0500 -3.6869 -1.1870 20 7 2.2020 -3.5507 -3.1163 21 6 1.5651 -2.0998 -1.2218 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.5987 -1.7168 1.2996 26 1 3.1255 -0.8072 1.2014 27 1 3.1351 -1.7072 4.7123 28 1 3.9188 0.1899 -1.5889 29 1 3.8910 -0.9692 -0.2204 30 1 5.3275 -3.3976 -2.5263 31 1 5.9564 -1.7790 -2.1355 32 1 5.2461 -2.7907 -0.8549 33 1 1.4388 -4.1832 -2.9276 34 1 1.9335 -2.8517 -3.7926 35 1 1.3924 -2.4502 -0.2042 36 1 0.6498 -2.1852 -1.8073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:20 Heat of formation + Delta-G solvation = -7.680262 kcal Electronic energy + Delta-G solvation = -14951.293150 eV Core-core repulsion = 12662.647184 eV Total energy + Delta-G solvation = -2288.645967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27534 -35.29353 -32.70200 -32.05054 -30.03341 -27.20532 -26.75231 -24.81510 -23.22205 -21.58328 -19.87328 -18.47524 -16.71694 -15.61951 -15.38893 -14.71972 -14.56501 -13.84527 -13.52375 -13.00915 -12.84943 -12.33325 -12.21753 -11.91396 -11.86377 -11.40648 -11.12926 -10.91872 -10.86247 -10.65298 -10.43350 -10.34157 -10.22659 -9.77472 -9.63182 -9.11374 -8.52033 -8.35465 -7.53319 -6.04610 -4.06484 3.28478 3.35167 3.38311 4.41407 4.64480 4.72779 4.93886 5.14672 5.30322 5.40731 5.64015 5.80894 5.86973 5.90463 6.01845 6.15333 6.18542 6.23563 6.31544 6.35157 6.40020 6.44464 6.63671 6.81545 6.88546 6.95502 7.29558 7.37746 7.52684 7.60186 7.72085 7.79510 7.98140 8.39424 8.99369 9.57174 11.06454 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039623 B = 0.008195 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.498392 B = 3415.819793 C = 3715.642984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.515 4.515 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.516 5.516 14 C 0.028 3.972 15 C -0.085 4.085 16 H 0.077 0.923 17 C -0.140 4.140 18 C 0.084 3.916 19 H 0.084 0.916 20 N -0.840 5.840 21 C -0.003 4.003 22 H 0.064 0.936 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.015 0.985 26 H 0.025 0.975 27 H 0.260 0.740 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.337 0.663 34 H 0.339 0.661 35 H 0.063 0.937 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -1.678 -10.551 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.040 4.040 3 H 0.089 0.911 4 C -0.042 4.042 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.239 5.239 14 C -0.100 4.100 15 C -0.105 4.105 16 H 0.096 0.904 17 C -0.197 4.197 18 C -0.029 4.029 19 H 0.102 0.898 20 N -0.368 5.368 21 C -0.134 4.134 22 H 0.083 0.917 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.529 -1.798 -10.930 11.089 hybrid contribution -0.907 0.529 2.001 2.260 sum -0.378 -1.268 -8.929 9.026 Atomic orbital electron populations 1.21686 0.95474 1.00817 1.00509 1.21938 0.94966 0.98070 0.88997 0.91148 1.19718 0.96798 0.95816 0.91846 1.21165 1.31716 1.11194 0.91319 0.92492 1.25025 0.95113 0.95146 0.99137 1.69959 1.35612 1.24011 1.23838 0.86611 0.78148 0.80501 0.82872 1.20700 1.21236 1.19848 1.65085 1.07154 1.12525 1.39152 1.23418 0.89507 0.97838 0.99239 1.22058 0.94181 0.94589 0.99628 0.90434 1.21731 0.95809 1.00421 1.01784 1.22424 0.94280 0.95370 0.90785 0.89791 1.58980 1.42544 1.23267 1.12047 1.23780 0.97849 0.90273 1.01463 0.91677 0.94287 0.93855 0.96649 0.95678 0.93025 0.90970 0.91522 0.92481 0.92888 0.92486 0.85100 0.84803 0.91865 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.92 37.15 0.33 -2.13 16 2 C 0.07 1.43 2.48 -67.71 -0.17 1.26 16 3 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 4 C 0.00 -0.10 3.81 -27.88 -0.11 -0.21 16 5 C -0.52 -14.27 8.49 -34.44 -0.29 -14.56 16 6 H 0.06 1.54 6.93 -52.49 -0.36 1.17 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.52 -9.47 5.32 -222.50 -1.18 -10.65 16 14 C 0.03 0.49 5.83 -1.90 -0.01 0.48 16 15 C -0.09 -1.26 3.35 -88.75 -0.30 -1.55 16 16 H 0.08 1.10 7.90 -51.93 -0.41 0.69 16 17 C -0.14 -1.89 9.16 37.16 0.34 -1.55 16 18 C 0.08 1.25 3.71 -66.35 -0.25 1.01 16 19 H 0.08 1.35 7.85 -51.93 -0.41 0.94 16 20 N -0.84 -10.49 9.19 -3.51 -0.03 -10.52 16 21 C 0.00 -0.06 4.97 -2.75 -0.01 -0.07 16 22 H 0.06 1.32 6.89 -51.93 -0.36 0.96 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.82 7.12 -51.93 -0.37 0.45 16 25 H 0.02 0.42 6.18 -51.93 -0.32 0.10 16 26 H 0.03 0.68 5.78 -51.93 -0.30 0.38 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.34 5.41 -51.93 -0.28 1.06 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.34 3.74 9.06 -39.29 -0.36 3.38 16 34 H 0.34 3.98 8.83 -39.29 -0.35 3.64 16 35 H 0.06 1.25 5.36 -51.93 -0.28 0.98 16 36 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 LS Contribution 277.19 15.07 4.18 4.18 Total: -1.00 -28.86 277.19 -7.76 -36.61 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.87 Total: 5.51 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.56 Total: -15.82 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.48 Total: -46.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.86 -7.76 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.931 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds