Wall clock time and date at job start Mon Mar 30 2020 02:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47363 * 2 1 4 4 C 1.53001 * 109.47095 * 120.00638 * 2 1 3 5 5 C 1.50696 * 109.46857 * 294.51330 * 4 2 1 6 6 H 1.07993 * 120.00261 * 4.41253 * 5 4 2 7 7 C 1.37882 * 120.00070 * 184.40822 * 5 4 2 8 8 N 1.31519 * 119.99902 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00338 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46725 * 90.00178 * 9 7 5 11 11 H 1.48500 * 109.47272 * 210.00381 * 9 7 5 12 12 H 1.48499 * 109.46846 * 330.00456 * 9 7 5 13 13 N 1.46907 * 109.47256 * 240.00214 * 2 1 3 14 14 C 1.48532 * 111.00054 * 181.60347 * 13 2 1 15 15 C 1.54940 * 103.22511 * 159.72437 * 14 13 2 16 16 H 1.09000 * 110.87496 * 81.01303 * 15 14 13 17 17 C 1.53002 * 110.72303 * 204.22729 * 15 14 13 18 18 C 1.54599 * 102.92201 * 322.58228 * 15 14 13 19 19 H 1.08999 * 110.30823 * 263.04372 * 18 15 14 20 20 N 1.46900 * 110.30819 * 140.87602 * 18 15 14 21 21 C 1.47907 * 111.00010 * 299.00265 * 13 2 1 22 22 H 1.09000 * 109.47408 * 299.99346 * 1 2 3 23 23 H 1.09001 * 109.47347 * 59.99617 * 1 2 3 24 24 H 1.09007 * 109.47312 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47400 * 54.51667 * 4 2 1 26 26 H 1.09000 * 109.47088 * 174.51453 * 4 2 1 27 27 H 0.96997 * 120.00309 * 179.97438 * 8 7 5 28 28 H 1.09003 * 110.66629 * 278.15684 * 14 13 2 29 29 H 1.08999 * 110.66837 * 41.28957 * 14 13 2 30 30 H 1.09001 * 109.47333 * 173.50096 * 17 15 14 31 31 H 1.08997 * 109.47097 * 293.50083 * 17 15 14 32 32 H 1.09001 * 109.46817 * 53.49955 * 17 15 14 33 33 H 1.00904 * 110.99611 * 182.83644 * 20 18 15 34 34 H 1.00903 * 111.00117 * 306.78153 * 20 18 15 35 35 H 1.08998 * 109.91115 * 333.50524 * 21 13 2 36 36 H 1.08991 * 109.91761 * 94.80153 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6516 0.0630 2.4759 6 1 1.0361 0.9452 2.3803 7 6 2.0820 -0.3457 3.7204 8 7 2.8319 -1.4198 3.8368 9 14 1.6012 0.6270 5.2410 10 1 0.3239 0.0982 5.7833 11 1 2.6661 0.4984 6.2680 12 1 1.4314 2.0574 4.8803 13 7 2.0197 -0.6925 -1.1995 14 6 3.5039 -0.7460 -1.2146 15 6 3.8068 -1.9085 -2.1931 16 1 3.7424 -1.5719 -3.2278 17 6 5.1832 -2.5124 -1.9069 18 6 2.6866 -2.9263 -1.8780 19 1 3.0500 -3.6869 -1.1870 20 7 2.2020 -3.5507 -3.1163 21 6 1.5651 -2.0998 -1.2218 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.5987 -1.7168 1.2996 26 1 3.1255 -0.8072 1.2014 27 1 3.1351 -1.7072 4.7123 28 1 3.9188 0.1899 -1.5889 29 1 3.8910 -0.9692 -0.2204 30 1 5.3275 -3.3976 -2.5263 31 1 5.9564 -1.7790 -2.1355 32 1 5.2461 -2.7907 -0.8549 33 1 1.4388 -4.1832 -2.9276 34 1 1.9335 -2.8517 -3.7926 35 1 1.3924 -2.4502 -0.2042 36 1 0.6498 -2.1852 -1.8073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:19 Heat of formation + Delta-G solvation = -28.880460 kcal Electronic energy + Delta-G solvation = -14952.212460 eV Core-core repulsion = 12662.647184 eV Total energy + Delta-G solvation = -2289.565276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71576 -36.85211 -34.67033 -33.31537 -31.61106 -29.05079 -28.17768 -26.17517 -25.18682 -23.03932 -21.19652 -20.08227 -18.75973 -16.97261 -16.83175 -16.42780 -16.13501 -15.26720 -15.22634 -14.63238 -14.22104 -13.91136 -13.62529 -13.52379 -13.34226 -13.04492 -12.76236 -12.67636 -12.54930 -12.29956 -11.97887 -11.72374 -11.60208 -11.55939 -11.34142 -11.18507 -10.53659 -9.61625 -9.16834 -8.21764 -6.31821 1.37340 1.37942 1.49072 2.38023 3.10665 3.16896 3.56084 3.66676 3.86046 4.17256 4.26980 4.31975 4.50469 4.52735 4.62697 4.67294 4.74873 4.84136 4.93282 4.99394 5.08427 5.10090 5.17228 5.26412 5.32394 5.39764 5.49325 5.60233 5.72383 6.05469 6.07661 6.22691 6.34838 6.64097 6.83929 7.36363 8.89236 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039623 B = 0.008195 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.498392 B = 3415.819793 C = 3715.642984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.076 3.924 3 H 0.064 0.936 4 C 0.008 3.992 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.507 5.507 14 C 0.025 3.975 15 C -0.076 4.076 16 H 0.095 0.905 17 C -0.135 4.135 18 C 0.091 3.909 19 H 0.069 0.931 20 N -0.830 5.830 21 C -0.001 4.001 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.041 0.959 25 H -0.010 1.010 26 H -0.002 1.002 27 H 0.262 0.738 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.347 0.653 34 H 0.348 0.652 35 H 0.029 0.971 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 -1.075 -11.761 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.033 4.033 3 H 0.082 0.918 4 C -0.030 4.030 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 N -0.230 5.230 14 C -0.103 4.103 15 C -0.095 4.095 16 H 0.113 0.887 17 C -0.193 4.193 18 C -0.021 4.021 19 H 0.088 0.912 20 N -0.360 5.360 21 C -0.131 4.131 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.008 0.992 26 H 0.016 0.984 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.047 0.953 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.038 -1.194 -12.163 12.222 hybrid contribution -0.722 0.308 2.338 2.467 sum -0.760 -0.886 -9.825 9.894 Atomic orbital electron populations 1.21592 0.93922 1.00959 1.01206 1.21750 0.96184 0.97277 0.88067 0.91817 1.19555 0.94962 0.94827 0.93624 1.21590 1.31580 1.11474 0.92450 0.92005 1.25941 0.95034 0.96153 1.02601 1.70098 1.36825 1.25697 1.24649 0.85506 0.77919 0.79351 0.78661 1.19898 1.20922 1.18709 1.65120 1.07738 1.13178 1.36946 1.23452 0.88865 0.99664 0.98350 1.22029 0.94664 0.93251 0.99534 0.88694 1.21694 0.95523 1.01302 1.00786 1.22254 0.93654 0.94798 0.91444 0.91241 1.58924 1.43214 1.23245 1.10640 1.23829 0.99532 0.89711 1.00039 0.92825 0.91642 0.93977 0.99191 0.98376 0.92950 0.89854 0.94910 0.91148 0.91455 0.94445 0.83958 0.83781 0.95283 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.92 71.98 0.64 -3.87 16 2 C 0.08 3.20 2.48 44.91 0.11 3.31 16 3 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.01 0.43 3.81 29.85 0.11 0.55 16 5 C -0.53 -30.04 8.49 25.60 0.22 -29.82 16 6 H 0.06 3.35 6.93 -2.91 -0.02 3.33 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.51 -18.34 5.32 -857.85 -4.56 -22.90 16 14 C 0.02 0.86 5.83 86.65 0.51 1.37 16 15 C -0.08 -2.12 3.35 -9.59 -0.03 -2.15 16 16 H 0.09 2.40 7.90 -2.39 -0.02 2.38 16 17 C -0.14 -3.52 9.16 71.98 0.66 -2.86 16 18 C 0.09 2.65 3.71 45.80 0.17 2.82 16 19 H 0.07 2.24 7.85 -2.39 -0.02 2.22 16 20 N -0.83 -18.74 9.19 -165.03 -1.52 -20.26 16 21 C 0.00 -0.03 4.97 86.45 0.43 0.40 16 22 H 0.05 2.13 6.89 -2.39 -0.02 2.11 16 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.04 1.58 7.12 -2.38 -0.02 1.56 16 25 H -0.01 -0.57 6.18 -2.39 -0.01 -0.59 16 26 H 0.00 -0.11 5.78 -2.39 -0.01 -0.12 16 27 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.03 1.38 5.41 -2.39 -0.01 1.37 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.35 6.89 9.06 -89.69 -0.81 6.08 16 34 H 0.35 7.06 8.83 -89.69 -0.79 6.27 16 35 H 0.03 1.19 5.36 -2.39 -0.01 1.18 16 36 H 0.08 2.43 7.92 -2.39 -0.02 2.41 16 Total: -1.00 -62.38 277.19 -1.02 -63.40 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.54 Total: 19.63 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 3.28 Total: -29.77 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -5.79 Total: -99.68 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -62.38 -1.02 -63.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.517 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds