Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47463 * 2 1 4 4 C 1.53005 * 109.46862 * 120.00002 * 2 1 3 5 5 C 1.50701 * 109.47250 * 184.04729 * 4 2 1 6 6 H 1.08000 * 119.99853 * 355.23892 * 5 4 2 7 7 C 1.37877 * 120.00180 * 175.24318 * 5 4 2 8 8 N 1.31516 * 119.99882 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00129 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46845 * 90.00099 * 9 7 5 11 11 H 1.48495 * 109.47062 * 210.00056 * 9 7 5 12 12 H 1.48503 * 109.46887 * 330.00532 * 9 7 5 13 13 N 1.46901 * 109.47332 * 239.99682 * 2 1 3 14 14 C 1.44184 * 110.99863 * 308.50528 * 13 2 1 15 15 C 1.54319 * 112.61725 * 217.52608 * 14 13 2 16 16 C 1.54313 * 111.72322 * 318.91809 * 15 14 13 17 17 N 1.44185 * 112.61177 * 318.92074 * 16 15 14 18 18 C 1.48080 * 109.89408 * 94.35460 * 17 16 15 19 19 C 1.46090 * 112.16081 * 279.63595 * 18 17 16 20 20 H 1.08995 * 109.47533 * 185.82614 * 1 2 3 21 21 H 1.09005 * 109.47021 * 305.82902 * 1 2 3 22 22 H 1.09005 * 109.46909 * 65.82308 * 1 2 3 23 23 H 1.09002 * 109.46675 * 304.04623 * 4 2 1 24 24 H 1.08998 * 109.47420 * 64.04576 * 4 2 1 25 25 H 0.96998 * 120.00283 * 179.97438 * 8 7 5 26 26 H 1.09000 * 108.85235 * 96.71636 * 14 13 2 27 27 H 1.08998 * 108.77174 * 338.27511 * 14 13 2 28 28 H 1.09005 * 109.03003 * 198.34184 * 15 14 13 29 29 H 1.09000 * 108.97274 * 79.45250 * 15 14 13 30 30 H 1.09003 * 108.85564 * 198.11464 * 16 15 14 31 31 H 1.09003 * 108.77602 * 79.67731 * 16 15 14 32 32 H 1.00902 * 110.99894 * 217.52682 * 17 16 15 33 33 H 1.09000 * 108.94291 * 158.94029 * 18 17 16 34 34 H 1.08999 * 108.94508 * 40.32472 * 18 17 16 35 35 H 1.08994 * 108.94690 * 181.37282 * 19 18 17 36 36 H 1.09000 * 108.94448 * 300.00240 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5436 -0.6351 1.3006 6 1 4.0869 -0.1854 0.4826 7 6 4.2257 -1.1303 2.3916 8 7 3.5641 -1.6775 3.3879 9 14 6.0896 -1.0241 2.4548 10 1 6.4911 0.2536 3.0965 11 1 6.6239 -2.1633 3.2433 12 1 6.6355 -1.0779 1.0748 13 7 2.0197 -0.6926 -1.1994 14 6 1.4018 -1.9881 -1.3364 15 6 2.3769 -3.0568 -1.8735 16 6 3.2720 -2.4989 -2.9999 17 7 2.5485 -1.6501 -3.9138 18 6 2.6858 -0.2342 -3.5025 19 6 1.7737 0.1149 -2.4160 20 1 -0.3634 -1.0223 0.1043 21 1 -0.3633 0.6016 0.8332 22 1 -0.3633 0.4209 -0.9376 23 1 1.6185 -0.2510 2.1378 24 1 1.7370 -1.7677 1.2138 25 1 4.0440 -2.0262 4.1553 26 1 0.5580 -1.9051 -2.0214 27 1 1.0333 -2.3059 -0.3611 28 1 1.8032 -3.8993 -2.2598 29 1 3.0091 -3.4027 -1.0556 30 1 3.6986 -3.3332 -3.5567 31 1 4.0825 -1.9240 -2.5518 32 1 2.8680 -1.7840 -4.8615 33 1 2.4762 0.4052 -4.3599 34 1 3.7104 -0.0587 -3.1745 35 1 1.9008 1.1697 -2.1724 36 1 0.7485 -0.0489 -2.7482 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = 5.728511 kcal Electronic energy + Delta-G solvation = -15243.096548 eV Core-core repulsion = 12955.032029 eV Total energy + Delta-G solvation = -2288.064519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.96360 -35.75433 -32.72097 -31.96988 -30.67422 -27.24979 -26.33046 -25.00566 -23.09472 -20.66727 -20.27343 -18.22395 -16.58256 -16.10446 -15.15942 -14.67600 -14.50278 -14.25683 -14.01579 -13.07676 -12.62600 -12.19059 -11.88718 -11.80617 -11.63601 -11.23199 -11.14986 -10.87586 -10.68227 -10.54765 -10.47142 -10.21416 -9.84502 -9.80859 -9.10249 -8.92356 -8.23234 -8.18214 -7.36468 -5.85370 -3.82486 3.39712 3.45946 3.50567 4.48551 4.57985 4.62803 5.36296 5.50963 5.54310 5.62186 5.75159 5.79288 5.87625 5.90614 6.02683 6.10340 6.15374 6.21018 6.32470 6.43106 6.46972 6.56263 6.69262 6.74928 6.82508 7.06782 7.35093 7.65380 7.67800 7.78173 8.06488 8.12276 8.20738 8.64256 9.23817 9.78673 11.26739 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.010706 C = 0.009215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.737463 B = 2614.804913 C = 3037.790182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.506 5.506 14 C 0.073 3.927 15 C -0.102 4.102 16 C 0.069 3.931 17 N -0.686 5.686 18 C 0.064 3.936 19 C 0.055 3.945 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.039 0.961 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.256 0.744 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.334 0.666 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 0.991 -12.218 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.229 5.229 14 C -0.056 4.056 15 C -0.141 4.141 16 C -0.061 4.061 17 N -0.316 5.316 18 C -0.065 4.065 19 C -0.073 4.073 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.261 0.752 -11.675 12.146 hybrid contribution 1.096 0.270 -0.175 1.142 sum -2.166 1.022 -11.850 12.090 Atomic orbital electron populations 1.22559 0.99712 1.01452 1.00336 1.22007 0.90012 0.98178 0.91949 0.91456 1.19205 0.96383 0.95113 0.89954 1.21165 0.91718 1.36886 1.02674 0.92189 1.25006 0.97840 0.96091 0.96011 1.69963 1.35060 1.41298 1.08229 0.86662 0.86651 0.77252 0.77793 1.21063 1.21601 1.20031 1.61568 1.58372 1.02128 1.00830 1.21623 0.94496 0.90060 0.99465 1.21972 0.98200 0.96901 0.97048 1.21562 0.95323 0.95526 0.93737 1.59872 1.61127 1.05559 1.05021 1.20960 0.99427 0.88943 0.97143 1.21085 0.97514 0.97336 0.91393 0.92931 0.92813 0.94209 0.96099 0.96612 0.93392 0.95493 0.91566 0.93198 0.91397 0.93548 0.93434 0.84934 0.92051 0.93981 0.91713 0.94939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.57 37.16 0.32 -2.90 16 2 C 0.09 1.79 2.21 -67.71 -0.15 1.64 16 3 H 0.07 1.42 7.77 -51.93 -0.40 1.02 16 4 C 0.03 0.78 4.38 -27.88 -0.12 0.66 16 5 C -0.49 -13.70 8.82 -34.44 -0.30 -14.00 16 6 H 0.06 1.70 7.72 -52.49 -0.41 1.29 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.51 -9.81 3.88 -231.07 -0.90 -10.71 16 14 C 0.07 1.36 3.88 -4.58 -0.02 1.34 16 15 C -0.10 -1.78 6.42 -25.35 -0.16 -1.94 16 16 C 0.07 1.07 6.00 -4.59 -0.03 1.05 16 17 N -0.69 -9.61 6.44 -117.72 -0.76 -10.37 16 18 C 0.06 0.92 6.06 -6.45 -0.04 0.88 16 19 C 0.06 0.89 4.48 -6.45 -0.03 0.86 16 20 H 0.05 0.94 6.68 -51.93 -0.35 0.59 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.04 0.63 7.06 -51.93 -0.37 0.27 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.02 0.43 6.39 -51.93 -0.33 0.10 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.48 7.17 -51.93 -0.37 0.11 16 27 H 0.07 1.35 4.90 -51.93 -0.25 1.10 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.85 7.16 -51.93 -0.37 0.48 16 32 H 0.33 3.80 8.89 -39.29 -0.35 3.45 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.66 7.37 -51.93 -0.38 0.28 16 35 H 0.06 1.00 7.62 -51.93 -0.40 0.61 16 36 H 0.03 0.52 6.84 -51.93 -0.36 0.17 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -30.03 273.47 -8.46 -38.49 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.01 Total: -0.92 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.63 Total: -11.07 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.92 Total: -47.81 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.03 -8.46 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.216 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds