Wall clock time and date at job start Mon Mar 30 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47088 * 2 1 4 4 C 1.52998 * 109.47064 * 239.99434 * 2 1 3 5 5 C 1.50707 * 109.46850 * 176.62882 * 4 2 1 6 6 H 1.07991 * 119.99905 * 354.98357 * 5 4 2 7 7 C 1.37881 * 119.99451 * 174.98298 * 5 4 2 8 8 N 1.31515 * 120.00360 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99414 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47407 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47168 * 120.00377 * 9 7 5 12 12 H 1.48507 * 109.46571 * 239.99937 * 9 7 5 13 13 N 1.46907 * 109.46818 * 119.99829 * 2 1 3 14 14 C 1.47901 * 111.00125 * 56.35434 * 13 2 1 15 15 C 1.50801 * 108.50116 * 153.78886 * 14 13 2 16 16 C 1.53700 * 112.10310 * 92.54865 * 15 14 13 17 17 N 1.48058 * 112.46641 * 318.55340 * 16 15 14 18 18 C 1.44575 * 113.86020 * 318.31643 * 17 16 15 19 19 C 1.40010 * 111.00057 * 288.38232 * 13 2 1 20 20 H 1.08993 * 109.47130 * 63.77547 * 1 2 3 21 21 H 1.09001 * 109.47101 * 183.78034 * 1 2 3 22 22 H 1.09006 * 109.46956 * 303.77704 * 1 2 3 23 23 H 1.08994 * 109.47465 * 296.63169 * 4 2 1 24 24 H 1.09001 * 109.46456 * 56.63355 * 4 2 1 25 25 H 0.96995 * 119.99847 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.63419 * 273.48916 * 14 13 2 27 27 H 1.08996 * 109.63611 * 34.08189 * 14 13 2 28 28 H 1.08997 * 108.95433 * 331.86995 * 15 14 13 29 29 H 1.09005 * 108.88734 * 213.17467 * 15 14 13 30 30 H 1.08999 * 108.88015 * 197.78184 * 16 15 14 31 31 H 1.08992 * 108.80392 * 79.26952 * 16 15 14 32 32 H 1.00901 * 111.00418 * 84.43869 * 17 16 15 33 33 H 1.09001 * 109.57229 * 334.42534 * 18 17 16 34 34 H 1.09002 * 109.57852 * 214.04372 * 18 17 16 35 35 H 1.09006 * 108.95966 * 308.76932 * 19 13 2 36 36 H 1.08998 * 108.95845 * 67.51107 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5447 -0.6494 -1.2916 6 1 4.0788 -0.0721 -0.5515 7 6 4.2394 -1.3207 -2.2754 8 7 3.5890 -2.0242 -3.1764 9 14 6.1046 -1.2320 -2.3276 10 1 6.5913 -0.3827 -1.2109 11 1 6.6691 -2.5989 -2.1929 12 1 6.5361 -0.6435 -3.6210 13 7 2.0196 -0.6925 1.1995 14 6 1.4750 -2.0653 1.2785 15 6 2.4339 -2.9156 2.0731 16 6 2.0750 -2.9497 3.5672 17 7 1.6660 -1.6229 4.0813 18 6 2.4775 -0.5308 3.5924 19 6 1.7982 0.0765 2.3484 20 1 -0.3633 0.4541 -0.9218 21 1 -0.3633 -1.0254 0.0678 22 1 -0.3633 0.5714 0.8543 23 1 1.7268 -1.7649 -1.2194 24 1 1.6281 -0.2436 -2.1381 25 1 4.0778 -2.4967 -3.8682 26 1 0.5047 -2.0464 1.7747 27 1 1.3679 -2.4752 0.2742 28 1 3.4408 -2.5138 1.9599 29 1 2.4126 -3.9323 1.6806 30 1 2.9422 -3.2944 4.1305 31 1 1.2560 -3.6533 3.7158 32 1 0.6871 -1.4529 3.9054 33 1 3.4663 -0.9024 3.3236 34 1 2.5697 0.2309 4.3667 35 1 2.1917 1.0797 2.1843 36 1 0.7253 0.1425 2.5290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:23 Heat of formation + Delta-G solvation = 3.052615 kcal Electronic energy + Delta-G solvation = -15237.818443 eV Core-core repulsion = 12949.637888 eV Total energy + Delta-G solvation = -2288.180554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.40421 -35.76866 -32.77478 -31.97074 -30.67868 -27.34394 -25.93183 -25.41761 -23.19420 -21.12190 -20.22800 -18.76395 -16.17720 -16.06060 -15.28944 -15.06986 -14.68773 -14.21014 -13.66384 -13.09445 -12.83874 -12.47312 -12.41101 -11.86819 -11.70663 -11.44533 -11.16561 -10.91703 -10.80739 -10.64792 -10.45788 -10.30564 -10.18876 -9.90450 -9.18774 -8.96431 -8.27479 -8.11876 -7.39685 -5.89797 -3.87129 3.36890 3.44573 3.49943 4.49379 4.53747 4.57234 5.27101 5.29483 5.40703 5.47220 5.53803 5.63669 5.75197 5.77166 5.92058 5.97744 6.02357 6.05819 6.23619 6.25278 6.37851 6.47944 6.60760 6.67229 6.79241 6.97555 7.31158 7.53798 7.57628 7.74264 7.97163 8.11304 8.20222 8.57320 9.18270 9.74313 11.22214 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031209 B = 0.010046 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.960282 B = 2786.431576 C = 3134.824409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.526 5.526 14 C 0.069 3.931 15 C -0.151 4.151 16 C 0.062 3.938 17 N -0.699 5.699 18 C 0.065 3.935 19 C 0.042 3.958 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.038 0.962 23 H 0.023 0.977 24 H 0.014 0.986 25 H 0.256 0.744 26 H 0.019 0.981 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.335 0.665 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 0.727 10.798 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.017 4.017 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.249 5.249 14 C -0.058 4.058 15 C -0.190 4.190 16 C -0.067 4.067 17 N -0.329 5.329 18 C -0.066 4.066 19 C -0.089 4.089 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -3.953 0.514 11.192 11.881 hybrid contribution -0.142 0.130 -1.020 1.037 sum -4.094 0.644 10.172 10.984 Atomic orbital electron populations 1.22510 0.99747 1.01050 1.00748 1.21883 0.89954 0.98027 0.91805 0.91486 1.19247 0.96449 0.95449 0.89729 1.21158 0.91492 1.28892 1.10887 0.92292 1.24995 0.97984 0.95905 0.96011 1.69969 1.35024 1.33109 1.16397 0.86590 0.86542 0.77570 0.77598 1.19816 1.21344 1.21425 1.59168 1.61625 1.02088 1.02054 1.21750 0.93897 0.89165 1.00999 1.21999 1.02138 1.00098 0.94790 1.22362 1.00447 0.90097 0.93793 1.59678 1.07451 1.02360 1.63372 1.21918 0.97913 0.92876 0.93858 1.21656 0.96891 0.98067 0.92323 0.92504 0.93101 0.94303 0.95861 0.96738 0.93404 0.96285 0.89317 0.90117 0.91844 0.91631 0.92187 0.84641 0.90309 0.91180 0.91392 0.97273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.66 37.16 0.32 -2.81 16 2 C 0.09 1.84 2.23 -67.71 -0.15 1.68 16 3 H 0.07 1.39 7.81 -51.93 -0.41 0.98 16 4 C 0.03 0.71 4.35 -27.88 -0.12 0.59 16 5 C -0.49 -13.51 8.79 -34.44 -0.30 -13.82 16 6 H 0.06 1.65 7.75 -52.49 -0.41 1.25 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.53 -9.85 3.69 -231.75 -0.85 -10.71 16 14 C 0.07 1.22 3.77 -4.38 -0.02 1.20 16 15 C -0.15 -2.43 5.36 -27.47 -0.15 -2.58 16 16 C 0.06 0.84 6.49 -2.82 -0.02 0.82 16 17 N -0.70 -9.52 6.53 -113.50 -0.74 -10.26 16 18 C 0.06 0.93 6.31 -4.44 -0.03 0.90 16 19 C 0.04 0.67 4.67 -6.75 -0.03 0.64 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.05 0.87 6.70 -51.93 -0.35 0.52 16 22 H 0.04 0.60 7.04 -51.93 -0.37 0.23 16 23 H 0.02 0.62 6.02 -51.93 -0.31 0.31 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.31 6.77 -51.93 -0.35 -0.04 16 27 H 0.09 1.81 5.59 -51.93 -0.29 1.52 16 28 H 0.08 1.50 7.23 -51.93 -0.38 1.12 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.34 4.37 7.50 -39.29 -0.29 4.08 16 33 H 0.08 1.26 6.93 -51.93 -0.36 0.90 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.08 7.80 -51.93 -0.41 0.67 16 36 H 0.01 0.15 6.35 -51.93 -0.33 -0.18 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -29.03 271.11 -8.30 -37.33 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.92 Total: 0.91 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.59 Total: -12.03 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.86 Total: -47.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.03 -8.30 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.383 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds