Wall clock time and date at job start Mon Mar 30 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46609 * 2 1 4 4 C 1.52999 * 109.47079 * 239.99909 * 2 1 3 5 5 C 1.50706 * 109.46586 * 175.06453 * 4 2 1 6 6 H 1.07997 * 120.00478 * 354.99634 * 5 4 2 7 7 C 1.37881 * 119.99605 * 174.99272 * 5 4 2 8 8 N 1.31514 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99776 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46886 * 120.00372 * 9 7 5 12 12 H 1.48495 * 109.46928 * 240.00011 * 9 7 5 13 13 N 1.46895 * 109.46806 * 119.99639 * 2 1 3 14 14 C 1.47906 * 110.99811 * 63.22451 * 13 2 1 15 15 C 1.53998 * 107.05550 * 214.15317 * 14 13 2 16 16 C 1.54597 * 105.13829 * 1.22136 * 15 14 13 17 17 H 1.09004 * 110.72674 * 263.41647 * 16 15 14 18 18 C 1.53004 * 110.72247 * 140.31764 * 16 15 14 19 19 N 1.46898 * 109.47340 * 66.45282 * 18 16 15 20 20 C 1.48533 * 111.00636 * 305.82429 * 13 2 1 21 21 H 1.08998 * 109.47390 * 306.73611 * 1 2 3 22 22 H 1.09005 * 109.47091 * 66.73870 * 1 2 3 23 23 H 1.08994 * 109.47095 * 186.73224 * 1 2 3 24 24 H 1.08995 * 109.47099 * 295.06371 * 4 2 1 25 25 H 1.08997 * 109.47039 * 55.07220 * 4 2 1 26 26 H 0.96993 * 120.00267 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.91522 * 333.49821 * 14 13 2 28 28 H 1.08991 * 109.92041 * 94.80225 * 14 13 2 29 29 H 1.09003 * 110.31124 * 120.13879 * 15 14 13 30 30 H 1.09003 * 110.30942 * 242.31037 * 15 14 13 31 31 H 1.09001 * 109.47144 * 186.45217 * 18 16 15 32 32 H 1.08993 * 109.47163 * 306.45136 * 18 16 15 33 33 H 1.00901 * 111.00372 * 179.97438 * 19 18 16 34 34 H 1.00907 * 110.99901 * 303.95668 * 19 18 16 35 35 H 1.09007 * 110.66253 * 278.15870 * 20 13 2 36 36 H 1.08999 * 110.66461 * 41.28379 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5421 -0.6162 -1.3118 6 1 4.0726 -0.0206 -0.5837 7 6 4.2391 -1.2807 -2.2986 8 7 3.5932 -2.0065 -3.1849 9 14 6.1010 -1.1511 -2.3757 10 1 6.5828 -0.2811 -1.2729 11 1 6.6976 -2.5039 -2.2364 12 1 6.5028 -0.5648 -3.6795 13 7 2.0196 -0.6924 1.1995 14 6 1.6097 -2.1135 1.1955 15 6 1.3534 -2.5138 2.6602 16 6 1.6120 -1.2295 3.4809 17 1 2.6249 -1.2264 3.8836 18 6 0.5841 -1.0895 4.6056 19 7 0.7786 -2.1680 5.5838 20 6 1.4319 -0.1049 2.4306 21 1 -0.3634 0.6147 0.8235 22 1 -0.3633 0.4059 -0.9442 23 1 -0.3633 -1.0205 0.1205 24 1 1.7507 -1.7712 -1.2061 25 1 1.6064 -0.2610 -2.1370 26 1 4.0835 -2.4737 -3.8793 27 1 0.6970 -2.2351 0.6122 28 1 2.4061 -2.7285 0.7765 29 1 0.3220 -2.8429 2.7876 30 1 2.0430 -3.3017 2.9634 31 1 0.7128 -0.1253 5.0975 32 1 -0.4211 -1.1536 4.1892 33 1 0.1115 -2.0973 6.3375 34 1 0.7283 -3.0726 5.1395 35 1 1.9778 0.7905 2.7280 36 1 0.3752 0.1186 2.2835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:59 Heat of formation + Delta-G solvation = -5.009527 kcal Electronic energy + Delta-G solvation = -14794.578466 eV Core-core repulsion = 12506.048311 eV Total energy + Delta-G solvation = -2288.530155 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.14247 -35.60803 -33.15938 -31.86405 -28.87330 -28.42463 -27.21969 -23.98382 -22.97150 -21.67892 -19.82864 -18.32335 -16.37901 -16.14544 -15.58129 -15.09744 -14.40365 -14.31835 -13.54142 -13.18053 -13.01141 -12.85227 -12.13846 -11.73032 -11.55902 -11.46132 -11.11520 -10.86966 -10.72992 -10.55480 -10.53389 -10.33356 -10.10739 -9.87446 -9.09442 -8.98552 -8.79599 -8.24828 -7.48204 -5.87441 -3.85344 3.39900 3.47252 3.53717 4.41357 4.58178 4.68681 4.91922 5.18459 5.19582 5.48768 5.52316 5.58243 5.65794 5.72075 5.91540 5.92614 6.01564 6.05938 6.10858 6.13788 6.40371 6.51835 6.58247 6.72627 6.82400 6.99017 7.03452 7.31658 7.53941 7.69533 7.85050 8.03121 8.14467 8.59102 9.21037 9.76602 11.24552 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039707 B = 0.007727 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.002224 B = 3623.017221 C = 3930.892121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.076 3.924 3 H 0.070 0.930 4 C 0.027 3.973 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.487 5.487 14 C 0.041 3.959 15 C -0.127 4.127 16 C -0.090 4.090 17 H 0.087 0.913 18 C 0.071 3.929 19 N -0.851 5.851 20 C 0.030 3.970 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.023 0.977 25 H 0.015 0.985 26 H 0.256 0.744 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.337 0.663 34 H 0.341 0.659 35 H 0.073 0.927 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 0.626 12.736 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.033 4.033 3 H 0.089 0.911 4 C -0.010 4.010 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.210 5.210 14 C -0.087 4.087 15 C -0.165 4.165 16 C -0.109 4.109 17 H 0.106 0.894 18 C -0.060 4.060 19 N -0.380 5.380 20 C -0.099 4.099 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.282 0.902 12.673 14.173 hybrid contribution -0.892 -0.383 -0.499 1.092 sum -7.174 0.518 12.174 14.140 Atomic orbital electron populations 1.22550 0.99971 1.00982 1.00989 1.22028 0.89977 0.98831 0.92427 0.91139 1.19238 0.96447 0.95604 0.89760 1.21217 0.91729 1.28435 1.11465 0.92113 1.25005 0.98103 0.95772 0.96002 1.69974 1.35151 1.32591 1.16830 0.86569 0.86377 0.77655 0.77608 1.19721 1.21298 1.21407 1.64963 1.53828 1.01358 1.00812 1.22789 1.00110 0.91393 0.94393 1.22496 1.00246 0.97719 0.96047 1.22095 0.99862 0.95211 0.93744 0.89416 1.21793 0.96424 0.95041 0.92746 1.58698 1.58910 1.06440 1.14001 1.23331 0.97939 0.97364 0.91280 0.93788 0.92451 0.92960 0.95875 0.96723 0.93391 0.93794 0.89875 0.92822 0.91373 0.91163 0.95836 0.85142 0.84656 0.90853 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 8.37 37.16 0.31 -2.94 16 2 C 0.08 1.58 2.46 -67.71 -0.17 1.42 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.03 0.69 4.26 -27.88 -0.12 0.57 16 5 C -0.49 -13.96 8.83 -34.44 -0.30 -14.26 16 6 H 0.06 1.75 7.75 -52.49 -0.41 1.34 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.49 -9.56 5.06 -222.50 -1.13 -10.68 16 14 C 0.04 0.76 5.05 -2.75 -0.01 0.75 16 15 C -0.13 -1.83 5.69 -25.37 -0.14 -1.98 16 16 C -0.09 -1.25 3.31 -88.76 -0.29 -1.54 16 17 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 18 C 0.07 0.80 6.18 -3.82 -0.02 0.78 16 19 N -0.85 -8.71 9.62 -10.37 -0.10 -8.81 16 20 C 0.03 0.46 5.79 -1.90 -0.01 0.45 16 21 H 0.04 0.67 6.35 -51.93 -0.33 0.34 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.90 5.97 -51.93 -0.31 0.59 16 24 H 0.02 0.63 6.69 -51.93 -0.35 0.28 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 27 H 0.04 0.82 5.30 -51.93 -0.28 0.55 16 28 H 0.08 1.76 8.11 -51.93 -0.42 1.34 16 29 H 0.05 0.69 7.80 -51.93 -0.41 0.29 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.26 8.07 -51.93 -0.42 -0.16 16 33 H 0.34 2.73 9.08 -39.29 -0.36 2.37 16 34 H 0.34 3.30 8.21 -39.29 -0.32 2.98 16 35 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 36 H 0.04 0.64 5.50 -51.93 -0.29 0.36 16 LS Contribution 278.34 15.07 4.19 4.19 Total: -1.00 -30.40 278.34 -8.15 -38.55 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.97 Total: 1.59 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.86 Total: -15.39 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.49 Total: -46.27 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.40 -8.15 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.540 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds