Wall clock time and date at job start Mon Mar 30 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46609 * 2 1 4 4 C 1.52999 * 109.47079 * 239.99909 * 2 1 3 5 5 C 1.50706 * 109.46586 * 175.06453 * 4 2 1 6 6 H 1.07997 * 120.00478 * 354.99634 * 5 4 2 7 7 C 1.37881 * 119.99605 * 174.99272 * 5 4 2 8 8 N 1.31514 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99776 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46886 * 120.00372 * 9 7 5 12 12 H 1.48495 * 109.46928 * 240.00011 * 9 7 5 13 13 N 1.46895 * 109.46806 * 119.99639 * 2 1 3 14 14 C 1.47906 * 110.99811 * 63.22451 * 13 2 1 15 15 C 1.53998 * 107.05550 * 214.15317 * 14 13 2 16 16 C 1.54597 * 105.13829 * 1.22136 * 15 14 13 17 17 H 1.09004 * 110.72674 * 263.41647 * 16 15 14 18 18 C 1.53004 * 110.72247 * 140.31764 * 16 15 14 19 19 N 1.46898 * 109.47340 * 66.45282 * 18 16 15 20 20 C 1.48533 * 111.00636 * 305.82429 * 13 2 1 21 21 H 1.08998 * 109.47390 * 306.73611 * 1 2 3 22 22 H 1.09005 * 109.47091 * 66.73870 * 1 2 3 23 23 H 1.08994 * 109.47095 * 186.73224 * 1 2 3 24 24 H 1.08995 * 109.47099 * 295.06371 * 4 2 1 25 25 H 1.08997 * 109.47039 * 55.07220 * 4 2 1 26 26 H 0.96993 * 120.00267 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.91522 * 333.49821 * 14 13 2 28 28 H 1.08991 * 109.92041 * 94.80225 * 14 13 2 29 29 H 1.09003 * 110.31124 * 120.13879 * 15 14 13 30 30 H 1.09003 * 110.30942 * 242.31037 * 15 14 13 31 31 H 1.09001 * 109.47144 * 186.45217 * 18 16 15 32 32 H 1.08993 * 109.47163 * 306.45136 * 18 16 15 33 33 H 1.00901 * 111.00372 * 179.97438 * 19 18 16 34 34 H 1.00907 * 110.99901 * 303.95668 * 19 18 16 35 35 H 1.09007 * 110.66253 * 278.15870 * 20 13 2 36 36 H 1.08999 * 110.66461 * 41.28379 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5421 -0.6162 -1.3118 6 1 4.0726 -0.0206 -0.5837 7 6 4.2391 -1.2807 -2.2986 8 7 3.5932 -2.0065 -3.1849 9 14 6.1010 -1.1511 -2.3757 10 1 6.5828 -0.2811 -1.2729 11 1 6.6976 -2.5039 -2.2364 12 1 6.5028 -0.5648 -3.6795 13 7 2.0196 -0.6924 1.1995 14 6 1.6097 -2.1135 1.1955 15 6 1.3534 -2.5138 2.6602 16 6 1.6120 -1.2295 3.4809 17 1 2.6249 -1.2264 3.8836 18 6 0.5841 -1.0895 4.6056 19 7 0.7786 -2.1680 5.5838 20 6 1.4319 -0.1049 2.4306 21 1 -0.3634 0.6147 0.8235 22 1 -0.3633 0.4059 -0.9442 23 1 -0.3633 -1.0205 0.1205 24 1 1.7507 -1.7712 -1.2061 25 1 1.6064 -0.2610 -2.1370 26 1 4.0835 -2.4737 -3.8793 27 1 0.6970 -2.2351 0.6122 28 1 2.4061 -2.7285 0.7765 29 1 0.3220 -2.8429 2.7876 30 1 2.0430 -3.3017 2.9634 31 1 0.7128 -0.1253 5.0975 32 1 -0.4211 -1.1536 4.1892 33 1 0.1115 -2.0973 6.3375 34 1 0.7283 -3.0726 5.1395 35 1 1.9778 0.7905 2.7280 36 1 0.3752 0.1186 2.2835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:58 Heat of formation + Delta-G solvation = -27.596582 kcal Electronic energy + Delta-G solvation = -14795.557914 eV Core-core repulsion = 12506.048311 eV Total energy + Delta-G solvation = -2289.509603 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53269 -36.88621 -34.93020 -33.48858 -30.30507 -29.82449 -28.98021 -25.49978 -24.45325 -23.30468 -21.00944 -19.90198 -18.38751 -17.49510 -16.84005 -16.43251 -16.27672 -15.49345 -14.90114 -14.74473 -14.29610 -14.07189 -13.83948 -13.50332 -13.26900 -12.86048 -12.71622 -12.54337 -12.43816 -12.31345 -11.93532 -11.81513 -11.51684 -11.34876 -11.13549 -10.97100 -10.50433 -9.56837 -8.97844 -8.12410 -6.17637 1.39639 1.40628 1.54238 2.45888 3.16398 3.28449 3.56332 3.80063 3.98685 4.09730 4.18077 4.40323 4.41717 4.52554 4.54358 4.62014 4.71411 4.82485 4.91044 4.93571 4.99263 5.14375 5.20530 5.25041 5.34190 5.44290 5.45342 5.70332 5.87681 6.25650 6.28439 6.31305 6.51988 6.65062 6.96074 7.48481 8.99767 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039707 B = 0.007727 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.002224 B = 3623.017221 C = 3930.892121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.064 0.936 4 C 0.033 3.967 5 C -0.501 4.501 6 H 0.054 0.946 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.514 5.514 14 C 0.042 3.958 15 C -0.115 4.115 16 C -0.081 4.081 17 H 0.073 0.927 18 C 0.080 3.920 19 N -0.858 5.858 20 C 0.032 3.968 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.052 0.948 24 H -0.001 1.001 25 H -0.010 1.010 26 H 0.259 0.741 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.351 0.649 34 H 0.344 0.656 35 H 0.076 0.924 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 1.080 14.615 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.237 5.237 14 C -0.086 4.086 15 C -0.153 4.153 16 C -0.101 4.101 17 H 0.091 0.909 18 C -0.052 4.052 19 N -0.389 5.389 20 C -0.096 4.096 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.018 0.982 25 H 0.008 0.992 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.725 1.363 14.574 16.109 hybrid contribution -0.755 -0.528 -1.088 1.426 sum -7.480 0.835 13.486 15.444 Atomic orbital electron populations 1.22409 0.97047 1.01691 1.02232 1.21735 0.92295 0.97566 0.90998 0.91819 1.19093 0.95266 0.94550 0.91519 1.21501 0.93256 1.28085 1.11146 0.92756 1.25849 1.03006 0.95467 0.95684 1.70093 1.37062 1.33484 1.17532 0.85514 0.80527 0.77794 0.77899 1.19092 1.20801 1.20564 1.64809 1.55279 1.01958 1.01693 1.22683 0.98262 0.90567 0.97081 1.22416 1.01760 0.98179 0.92986 1.22005 1.00124 0.93874 0.94050 0.90891 1.21661 0.95705 0.95796 0.92001 1.58651 1.59717 1.06355 1.14221 1.23385 0.98592 0.97890 0.89725 0.90794 0.92521 0.92882 0.98224 0.99181 0.93204 0.94286 0.93913 0.90460 0.91036 0.90423 0.94822 0.83547 0.84269 0.90517 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 8.37 71.98 0.60 -5.28 16 2 C 0.08 3.47 2.46 44.92 0.11 3.58 16 3 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 4 C 0.03 1.76 4.26 29.85 0.13 1.88 16 5 C -0.50 -29.29 8.83 25.60 0.23 -29.07 16 6 H 0.05 3.18 7.75 -2.91 -0.02 3.15 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 8 N -0.94 -58.51 13.29 21.45 0.28 -58.22 16 9 Si 0.96 46.45 29.54 68.60 2.03 48.47 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.51 -20.06 5.06 -857.87 -4.34 -24.40 16 14 C 0.04 1.58 5.05 86.45 0.44 2.01 16 15 C -0.12 -3.14 5.69 31.47 0.18 -2.96 16 16 C -0.08 -2.07 3.31 -9.59 -0.03 -2.11 16 17 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 18 C 0.08 1.53 6.18 86.30 0.53 2.06 16 19 N -0.86 -14.87 9.62 -186.72 -1.80 -16.67 16 20 C 0.03 0.94 5.79 86.65 0.50 1.44 16 21 H 0.07 2.04 6.35 -2.39 -0.02 2.02 16 22 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.05 1.77 5.97 -2.39 -0.01 1.75 16 24 H 0.00 -0.03 6.69 -2.39 -0.02 -0.05 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 26 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 27 H 0.04 1.47 5.30 -2.39 -0.01 1.46 16 28 H 0.04 1.90 8.11 -2.39 -0.02 1.88 16 29 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 0.60 8.07 -2.39 -0.02 0.58 16 33 H 0.35 4.52 9.08 -89.69 -0.81 3.71 16 34 H 0.34 5.63 8.21 -89.69 -0.74 4.89 16 35 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.06 1.56 5.50 -2.39 -0.01 1.54 16 Total: -1.00 -66.24 278.34 -1.17 -67.41 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -0.49 Total: 11.63 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.15 Total: -28.22 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -5.85 Total: -99.29 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -66.24 -1.17 -67.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.811 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds