Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47020 * 2 1 4 4 C 1.53001 * 109.47658 * 120.00421 * 2 1 3 5 5 C 1.50693 * 109.47392 * 184.99918 * 4 2 1 6 6 H 1.08007 * 120.00028 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00118 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00096 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99799 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47119 * 90.00110 * 9 7 5 11 11 H 1.48504 * 109.47124 * 210.00037 * 9 7 5 12 12 H 1.48496 * 109.47347 * 330.00021 * 9 7 5 13 13 N 1.46905 * 109.47195 * 240.00844 * 2 1 3 14 14 C 1.47440 * 110.99832 * 305.90586 * 13 2 1 15 15 C 1.54320 * 107.23490 * 123.25543 * 14 13 2 16 16 C 1.55141 * 103.01771 * 22.28667 * 15 14 13 17 17 H 1.08999 * 110.99518 * 82.47479 * 16 15 14 18 18 C 1.52998 * 110.99228 * 206.25519 * 16 15 14 19 19 N 1.46899 * 109.47266 * 293.54773 * 18 16 15 20 20 C 1.47846 * 110.99924 * 66.74632 * 13 2 1 21 21 H 1.08999 * 109.46930 * 306.55141 * 1 2 3 22 22 H 1.08998 * 109.46730 * 186.55534 * 1 2 3 23 23 H 1.08994 * 109.47309 * 66.55666 * 1 2 3 24 24 H 1.08993 * 109.46944 * 305.00611 * 4 2 1 25 25 H 1.09009 * 109.46437 * 64.99995 * 4 2 1 26 26 H 0.96993 * 120.00092 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.88925 * 242.66559 * 14 13 2 28 28 H 1.09004 * 109.89116 * 3.85239 * 14 13 2 29 29 H 1.09004 * 110.70443 * 140.66354 * 15 14 13 30 30 H 1.09001 * 110.70713 * 263.72633 * 15 14 13 31 31 H 1.09007 * 109.46777 * 53.54118 * 18 16 15 32 32 H 1.08998 * 109.47463 * 173.54207 * 18 16 15 33 33 H 1.00897 * 111.00582 * 179.97438 * 19 18 16 34 34 H 1.00907 * 110.99470 * 303.95104 * 19 18 16 35 35 H 1.09000 * 110.37543 * 332.46882 * 20 13 2 36 36 H 1.08997 * 110.37268 * 94.81038 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0854 0.5394 7 6 4.2306 -1.1937 2.3575 8 7 5.5412 -1.1004 2.4131 9 14 3.3017 -2.1089 3.6950 10 1 3.1701 -3.5388 3.3165 11 1 4.0456 -2.0024 4.9759 12 1 1.9511 -1.5131 3.8561 13 7 2.0197 -0.6923 -1.1996 14 6 1.4347 -2.0415 -1.3067 15 6 0.7238 -2.1243 -2.6739 16 6 1.4281 -1.0173 -3.5017 17 1 2.3666 -1.3802 -3.9205 18 6 0.5081 -0.4878 -4.6036 19 7 0.2647 -1.5487 -5.5901 20 6 1.6825 0.0655 -2.4234 21 1 -0.3633 0.6120 0.8255 22 1 -0.3633 -1.0210 0.1173 23 1 -0.3633 0.4088 -0.9428 24 1 1.6055 -0.2620 2.1369 25 1 1.7517 -1.7717 1.2053 26 1 6.0256 -1.5072 3.1485 27 1 2.2226 -2.7926 -1.2524 28 1 0.7141 -2.1981 -0.5040 29 1 0.8773 -3.1026 -3.1294 30 1 -0.3403 -1.9125 -2.5685 31 1 -0.4398 -0.1742 -4.1659 32 1 0.9809 0.3630 -5.0941 33 1 -0.3411 -1.2237 -6.3286 34 1 1.1333 -1.9014 -5.9634 35 1 0.7840 0.6619 -2.2651 36 1 2.5161 0.7039 -2.7161 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = -1.214166 kcal Electronic energy + Delta-G solvation = -14797.574125 eV Core-core repulsion = 12509.208549 eV Total energy + Delta-G solvation = -2288.365576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21302 -35.58456 -33.20694 -31.87326 -28.90873 -28.68728 -27.67230 -23.94271 -22.74850 -21.42506 -20.07279 -18.47256 -16.54984 -16.02963 -15.94569 -14.85901 -14.55348 -14.27584 -13.72145 -13.40089 -12.87633 -12.46667 -12.39359 -12.09377 -11.70936 -11.61365 -11.22200 -11.02090 -10.73674 -10.68550 -10.62202 -10.19965 -9.96588 -9.69094 -9.46088 -9.00980 -8.79820 -8.38633 -7.43244 -5.87293 -3.81080 3.38489 3.45698 3.48364 4.36485 4.56698 4.58743 4.96892 5.02693 5.21217 5.44588 5.50022 5.55668 5.62633 5.66608 5.81433 5.83949 5.95506 6.00592 6.06731 6.23508 6.36879 6.46358 6.49011 6.57750 6.73138 6.85359 6.96949 7.17241 7.27571 7.39234 7.78473 7.87997 8.02621 8.76452 9.25428 9.75853 11.26889 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049396 B = 0.007411 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.710269 B = 3777.273751 C = 3877.055030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.489 4.489 6 H 0.078 0.922 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.499 5.499 14 C 0.040 3.960 15 C -0.120 4.120 16 C -0.096 4.096 17 H 0.079 0.921 18 C 0.072 3.928 19 N -0.850 5.850 20 C 0.043 3.957 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.017 0.983 25 H 0.012 0.988 26 H 0.259 0.741 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.337 0.663 34 H 0.340 0.660 35 H 0.043 0.957 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 0.518 -12.240 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.019 4.019 3 H 0.092 0.908 4 C -0.044 4.044 5 C -0.528 4.528 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.221 5.221 14 C -0.088 4.088 15 C -0.159 4.159 16 C -0.116 4.116 17 H 0.098 0.902 18 C -0.059 4.059 19 N -0.379 5.379 20 C -0.085 4.085 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.046 0.042 -11.444 15.905 hybrid contribution -0.779 0.170 0.071 0.801 sum -11.825 0.212 -11.372 16.408 Atomic orbital electron populations 1.22593 0.99748 1.01498 1.00769 1.21817 0.89813 0.98594 0.91670 0.90785 1.19670 0.98002 0.94985 0.91698 1.21063 0.89438 1.33735 1.08534 0.90363 1.25011 0.94668 0.96343 0.97820 1.69913 1.06409 1.46286 1.32331 0.86894 0.80386 0.80651 0.81968 1.20563 1.21641 1.19349 1.63706 1.56373 1.01282 1.00778 1.22855 0.97591 0.92663 0.95686 1.22689 0.98839 0.98853 0.95508 1.22294 0.98288 0.96356 0.94641 0.90246 1.21746 0.99088 0.91864 0.93180 1.58678 1.20611 1.38654 1.19920 1.23073 0.99295 0.95913 0.90233 0.92665 0.92767 0.93553 0.96491 0.96992 0.93107 0.90909 0.92471 0.91291 0.92186 0.91287 0.95628 0.85075 0.84771 0.93921 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 8.56 37.16 0.32 -2.78 16 2 C 0.09 1.81 2.22 -67.71 -0.15 1.66 16 3 H 0.07 1.55 8.12 -51.93 -0.42 1.13 16 4 C -0.01 -0.15 3.43 -27.89 -0.10 -0.24 16 5 C -0.49 -14.19 9.39 -34.44 -0.32 -14.51 16 6 H 0.08 2.49 7.99 -52.48 -0.42 2.07 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.80 13.96 55.43 0.77 -28.02 16 9 Si 0.87 22.29 27.47 -169.99 -4.67 17.62 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 N -0.50 -9.67 4.87 -223.29 -1.09 -10.76 16 14 C 0.04 0.71 5.56 -2.84 -0.02 0.69 16 15 C -0.12 -1.72 6.24 -24.91 -0.16 -1.87 16 16 C -0.10 -1.29 3.22 -88.48 -0.29 -1.57 16 17 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.07 0.78 6.23 -3.83 -0.02 0.76 16 19 N -0.85 -8.10 9.45 -10.37 -0.10 -8.20 16 20 C 0.04 0.68 5.94 -2.30 -0.01 0.66 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.89 6.25 -51.93 -0.32 0.56 16 23 H 0.05 0.69 6.19 -51.93 -0.32 0.36 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.29 6.19 -51.92 -0.32 -0.03 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.06 1.03 4.83 -51.93 -0.25 0.78 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 31 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.34 2.55 9.08 -39.29 -0.36 2.19 16 34 H 0.34 2.95 8.99 -39.29 -0.35 2.60 16 35 H 0.04 0.63 5.83 -51.93 -0.30 0.32 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -31.42 276.72 -7.74 -39.16 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.99 Total: 1.52 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.84 Total: -15.49 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.41 Total: -46.98 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.42 -7.74 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.949 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds