Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47020 * 2 1 4 4 C 1.53001 * 109.47658 * 120.00421 * 2 1 3 5 5 C 1.50693 * 109.47392 * 184.99918 * 4 2 1 6 6 H 1.08007 * 120.00028 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00118 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00096 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99799 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47119 * 90.00110 * 9 7 5 11 11 H 1.48504 * 109.47124 * 210.00037 * 9 7 5 12 12 H 1.48496 * 109.47347 * 330.00021 * 9 7 5 13 13 N 1.46905 * 109.47195 * 240.00844 * 2 1 3 14 14 C 1.47440 * 110.99832 * 305.90586 * 13 2 1 15 15 C 1.54320 * 107.23490 * 123.25543 * 14 13 2 16 16 C 1.55141 * 103.01771 * 22.28667 * 15 14 13 17 17 H 1.08999 * 110.99518 * 82.47479 * 16 15 14 18 18 C 1.52998 * 110.99228 * 206.25519 * 16 15 14 19 19 N 1.46899 * 109.47266 * 293.54773 * 18 16 15 20 20 C 1.47846 * 110.99924 * 66.74632 * 13 2 1 21 21 H 1.08999 * 109.46930 * 306.55141 * 1 2 3 22 22 H 1.08998 * 109.46730 * 186.55534 * 1 2 3 23 23 H 1.08994 * 109.47309 * 66.55666 * 1 2 3 24 24 H 1.08993 * 109.46944 * 305.00611 * 4 2 1 25 25 H 1.09009 * 109.46437 * 64.99995 * 4 2 1 26 26 H 0.96993 * 120.00092 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.88925 * 242.66559 * 14 13 2 28 28 H 1.09004 * 109.89116 * 3.85239 * 14 13 2 29 29 H 1.09004 * 110.70443 * 140.66354 * 15 14 13 30 30 H 1.09001 * 110.70713 * 263.72633 * 15 14 13 31 31 H 1.09007 * 109.46777 * 53.54118 * 18 16 15 32 32 H 1.08998 * 109.47463 * 173.54207 * 18 16 15 33 33 H 1.00897 * 111.00582 * 179.97438 * 19 18 16 34 34 H 1.00907 * 110.99470 * 303.95104 * 19 18 16 35 35 H 1.09000 * 110.37543 * 332.46882 * 20 13 2 36 36 H 1.08997 * 110.37268 * 94.81038 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0854 0.5394 7 6 4.2306 -1.1937 2.3575 8 7 5.5412 -1.1004 2.4131 9 14 3.3017 -2.1089 3.6950 10 1 3.1701 -3.5388 3.3165 11 1 4.0456 -2.0024 4.9759 12 1 1.9511 -1.5131 3.8561 13 7 2.0197 -0.6923 -1.1996 14 6 1.4347 -2.0415 -1.3067 15 6 0.7238 -2.1243 -2.6739 16 6 1.4281 -1.0173 -3.5017 17 1 2.3666 -1.3802 -3.9205 18 6 0.5081 -0.4878 -4.6036 19 7 0.2647 -1.5487 -5.5901 20 6 1.6825 0.0655 -2.4234 21 1 -0.3633 0.6120 0.8255 22 1 -0.3633 -1.0210 0.1173 23 1 -0.3633 0.4088 -0.9428 24 1 1.6055 -0.2620 2.1369 25 1 1.7517 -1.7717 1.2053 26 1 6.0256 -1.5072 3.1485 27 1 2.2226 -2.7926 -1.2524 28 1 0.7141 -2.1981 -0.5040 29 1 0.8773 -3.1026 -3.1294 30 1 -0.3403 -1.9125 -2.5685 31 1 -0.4398 -0.1742 -4.1659 32 1 0.9809 0.3630 -5.0941 33 1 -0.3411 -1.2237 -6.3286 34 1 1.1333 -1.9014 -5.9634 35 1 0.7840 0.6619 -2.2651 36 1 2.5161 0.7039 -2.7161 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = -25.311555 kcal Electronic energy + Delta-G solvation = -14798.619066 eV Core-core repulsion = 12509.208549 eV Total energy + Delta-G solvation = -2289.410517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55759 -36.80123 -34.89960 -33.59731 -30.46644 -29.94346 -29.28425 -25.24873 -24.29120 -23.03572 -21.18617 -20.03022 -18.78904 -17.31883 -17.01567 -16.30516 -15.99794 -15.39004 -15.07892 -14.90109 -14.37660 -14.22540 -13.85228 -13.66498 -13.38518 -12.86118 -12.62866 -12.54470 -12.42555 -11.90099 -11.85401 -11.71543 -11.60388 -11.44944 -11.28875 -11.10322 -10.67875 -9.53946 -8.86156 -8.18274 -6.17459 1.36332 1.37776 1.48959 2.41390 3.11944 3.27101 3.50320 3.83866 3.96847 4.11872 4.20303 4.35471 4.44420 4.50439 4.57333 4.59058 4.69617 4.83847 4.87194 4.92022 5.06895 5.10502 5.13458 5.20010 5.27314 5.32218 5.48092 5.57852 5.75087 6.24745 6.37936 6.38626 6.56260 6.65239 6.90443 7.43174 8.99441 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049396 B = 0.007411 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.710269 B = 3777.273751 C = 3877.055030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 H 0.058 0.942 4 C -0.003 4.003 5 C -0.492 4.492 6 H 0.032 0.968 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.534 5.534 14 C 0.039 3.961 15 C -0.106 4.106 16 C -0.088 4.088 17 H 0.070 0.930 18 C 0.081 3.919 19 N -0.855 5.855 20 C 0.044 3.956 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.021 0.979 25 H 0.014 0.986 26 H 0.261 0.739 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.351 0.649 34 H 0.345 0.655 35 H 0.059 0.941 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 0.138 -12.764 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 H 0.076 0.924 4 C -0.040 4.040 5 C -0.530 4.530 6 H 0.051 0.949 7 C -0.199 4.199 8 N -0.601 5.601 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.258 5.258 14 C -0.089 4.089 15 C -0.145 4.145 16 C -0.107 4.107 17 H 0.089 0.911 18 C -0.050 4.050 19 N -0.386 5.386 20 C -0.084 4.084 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.805 -0.329 -11.996 18.292 hybrid contribution 0.173 0.332 0.162 0.408 sum -13.632 0.003 -11.834 18.052 Atomic orbital electron populations 1.22436 0.96256 1.02221 1.02427 1.21606 0.92509 0.97061 0.90494 0.92356 1.19611 0.94621 0.95663 0.94128 1.21300 0.92063 1.32574 1.07091 0.94935 1.25968 0.95534 0.97582 1.00776 1.70084 1.08476 1.47984 1.33601 0.85736 0.79727 0.79305 0.78292 1.19742 1.21284 1.17054 1.63529 1.57953 1.02444 1.01875 1.22801 0.96904 0.91222 0.97932 1.22575 0.99013 0.99513 0.93377 1.22220 0.98569 0.95185 0.94757 0.91145 1.21598 0.98514 0.92273 0.92627 1.58634 1.21224 1.38265 1.20431 1.23083 0.99577 0.96315 0.89393 0.91672 0.92303 0.91388 0.96074 0.96754 0.93010 0.93586 0.92565 0.90671 0.90927 0.90867 0.94694 0.83560 0.84243 0.92327 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 8.56 71.98 0.62 -4.68 16 2 C 0.09 3.67 2.22 44.91 0.10 3.77 16 3 H 0.06 2.46 8.12 -2.38 -0.02 2.44 16 4 C 0.00 -0.13 3.43 29.85 0.10 -0.03 16 5 C -0.49 -29.33 9.39 25.60 0.24 -29.09 16 6 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 7 C 0.00 -0.24 5.47 84.66 0.46 0.23 16 8 N -0.96 -62.62 13.96 21.45 0.30 -62.32 16 9 Si 0.95 46.01 27.47 68.60 1.88 47.89 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 13 N -0.53 -20.69 4.87 -860.35 -4.19 -24.88 16 14 C 0.04 1.36 5.56 86.65 0.48 1.84 16 15 C -0.11 -2.81 6.24 31.78 0.20 -2.61 16 16 C -0.09 -2.19 3.22 -9.41 -0.03 -2.22 16 17 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 18 C 0.08 1.51 6.23 86.30 0.54 2.05 16 19 N -0.85 -13.79 9.45 -186.72 -1.76 -15.56 16 20 C 0.04 1.33 5.94 86.77 0.52 1.85 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.06 1.74 6.25 -2.39 -0.01 1.73 16 23 H 0.07 1.77 6.19 -2.39 -0.01 1.76 16 24 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 25 H 0.01 0.68 6.19 -2.38 -0.01 0.67 16 26 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.94 4.83 -2.39 -0.01 1.93 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.07 1.77 8.02 -2.39 -0.02 1.75 16 31 H 0.07 1.34 8.11 -2.38 -0.02 1.32 16 32 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.35 4.21 9.08 -89.70 -0.81 3.39 16 34 H 0.34 5.13 8.99 -89.69 -0.81 4.32 16 35 H 0.06 1.57 5.83 -2.39 -0.01 1.56 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.10 276.72 -1.16 -70.25 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.61 Total: 13.51 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 3.23 Total: -28.89 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -5.66 Total: -102.76 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.89 kcal Total: -69.10 -1.16 -70.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.942 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds