Wall clock time and date at job start Mon Mar 30 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47061 * 2 1 4 4 C 1.53000 * 109.47271 * 119.99972 * 2 1 3 5 5 C 1.50700 * 109.47098 * 185.00185 * 4 2 1 6 6 H 1.07992 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99669 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00160 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99882 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46978 * 89.99976 * 9 7 5 11 11 H 1.48505 * 109.47258 * 209.99867 * 9 7 5 12 12 H 1.48496 * 109.47158 * 329.99994 * 9 7 5 13 13 N 1.46901 * 109.47466 * 240.00563 * 2 1 3 14 14 C 1.47846 * 110.99343 * 301.37122 * 13 2 1 15 15 C 1.54908 * 104.79226 * 146.36628 * 14 13 2 16 16 C 1.55140 * 101.65570 * 322.92873 * 15 14 13 17 17 H 1.09005 * 110.85858 * 277.20507 * 16 15 14 18 18 C 1.52997 * 110.71067 * 154.03469 * 16 15 14 19 19 N 1.46900 * 109.46929 * 71.40362 * 18 16 15 20 20 C 1.47441 * 111.00194 * 62.21631 * 13 2 1 21 21 H 1.09005 * 109.47302 * 66.97332 * 1 2 3 22 22 H 1.08999 * 109.47082 * 186.96834 * 1 2 3 23 23 H 1.08996 * 109.47513 * 306.96917 * 1 2 3 24 24 H 1.09002 * 109.47192 * 305.00401 * 4 2 1 25 25 H 1.09000 * 109.46909 * 65.00017 * 4 2 1 26 26 H 0.97003 * 120.00186 * 180.02562 * 8 7 5 27 27 H 1.08996 * 110.37381 * 265.19042 * 14 13 2 28 28 H 1.08994 * 110.37952 * 27.42869 * 14 13 2 29 29 H 1.09006 * 110.99477 * 204.84115 * 15 14 13 30 30 H 1.08999 * 110.99419 * 81.02023 * 15 14 13 31 31 H 1.08995 * 109.47142 * 311.40350 * 18 16 15 32 32 H 1.09001 * 109.47470 * 191.40311 * 18 16 15 33 33 H 1.00901 * 111.00036 * 56.04470 * 19 18 16 34 34 H 1.00900 * 111.00290 * 180.02562 * 19 18 16 35 35 H 1.08999 * 109.88973 * 117.34136 * 20 13 2 36 36 H 1.08995 * 110.02379 * 356.22089 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1935 2.3578 8 7 3.5764 -1.8378 3.2995 9 14 6.0920 -1.0610 2.4369 10 1 6.4697 0.1611 3.1912 11 1 6.6447 -2.2566 3.1228 12 1 6.6416 -0.9822 1.0596 13 7 2.0197 -0.6924 -1.1995 14 6 1.5189 -2.0825 -1.2503 15 6 1.3245 -2.3780 -2.7584 16 6 0.8088 -1.0115 -3.2817 17 1 -0.2638 -0.9118 -3.1150 18 6 1.1422 -0.8394 -4.7649 19 7 0.2971 -1.7367 -5.5640 20 6 1.5910 0.0063 -2.4250 21 1 -0.3634 0.4020 -0.9458 22 1 -0.3633 -1.0201 0.1247 23 1 -0.3634 0.6180 0.8210 24 1 1.6053 -0.2618 2.1370 25 1 1.7517 -1.7715 1.2055 26 1 4.0608 -2.2446 4.0349 27 1 2.2516 -2.7658 -0.8211 28 1 0.5697 -2.1635 -0.7207 29 1 0.5806 -3.1601 -2.9105 30 1 2.2708 -2.6444 -3.2293 31 1 2.1912 -1.0834 -4.9323 32 1 0.9576 0.1932 -5.0614 33 1 -0.6810 -1.5736 -5.3775 34 1 0.4986 -1.6421 -6.5482 35 1 2.4632 0.3606 -2.9743 36 1 0.9472 0.8478 -2.1691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:04 Heat of formation + Delta-G solvation = -6.028704 kcal Electronic energy + Delta-G solvation = -14770.832958 eV Core-core repulsion = 12482.258608 eV Total energy + Delta-G solvation = -2288.574350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.13786 -35.50472 -33.18098 -31.82921 -28.81040 -28.49037 -27.19718 -23.90175 -22.83541 -21.54689 -20.04557 -18.58920 -16.20911 -15.89574 -15.60045 -14.88366 -14.48272 -14.31594 -13.80661 -13.29780 -13.06266 -12.25245 -12.05434 -11.77588 -11.58250 -11.38813 -11.19729 -10.86099 -10.71577 -10.55957 -10.49146 -10.34370 -10.16220 -9.87623 -9.08669 -8.96283 -8.76240 -8.22138 -7.37730 -5.84783 -3.82537 3.42010 3.47942 3.53758 4.41985 4.59936 4.73060 4.90536 5.03019 5.27789 5.50428 5.52379 5.65568 5.73865 5.77999 5.89971 5.94720 5.97358 6.09036 6.14421 6.33123 6.42239 6.52284 6.60438 6.78216 6.81640 7.00416 7.04217 7.29573 7.58473 7.76320 7.91843 8.08192 8.17758 8.62976 9.23791 9.79123 11.27267 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042396 B = 0.007487 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.284578 B = 3738.816693 C = 4010.769431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.501 5.501 14 C 0.043 3.957 15 C -0.110 4.110 16 C -0.107 4.107 17 H 0.067 0.933 18 C 0.073 3.927 19 N -0.850 5.850 20 C 0.043 3.957 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.257 0.743 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.337 0.663 34 H 0.338 0.662 35 H 0.067 0.933 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 1.964 -13.844 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.224 5.224 14 C -0.084 4.084 15 C -0.148 4.148 16 C -0.127 4.127 17 H 0.085 0.915 18 C -0.058 4.058 19 N -0.379 5.379 20 C -0.085 4.085 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.086 0.914 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.081 1.290 -13.240 14.626 hybrid contribution -0.279 0.965 -0.277 1.042 sum -6.360 2.255 -13.517 15.107 Atomic orbital electron populations 1.22556 0.99925 1.01454 1.00363 1.22071 0.89914 0.98453 0.92421 0.91389 1.19180 0.96380 0.95362 0.89825 1.21188 0.91828 1.32855 1.06973 0.92130 1.25011 0.98029 0.95879 0.96009 1.69969 1.35207 1.37026 1.12365 0.86631 0.86405 0.77177 0.77995 1.21028 1.21572 1.19886 1.63743 1.56785 1.01299 1.00544 1.23045 0.99166 0.91345 0.94854 1.22640 1.00855 0.95724 0.95600 1.22404 0.99463 0.97061 0.93799 0.91483 1.21795 0.97986 0.93155 0.92863 1.58682 1.09255 1.59192 1.10732 1.22855 0.97618 0.95997 0.92074 0.94033 0.92764 0.92745 0.96479 0.96290 0.93361 0.90047 0.93645 0.91530 0.91143 0.90699 0.95905 0.85077 0.85044 0.91447 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.55 37.16 0.32 -2.93 16 2 C 0.08 1.68 2.16 -67.71 -0.15 1.53 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.03 0.77 4.34 -27.88 -0.12 0.65 16 5 C -0.49 -14.04 8.84 -34.44 -0.30 -14.34 16 6 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.39 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.50 -9.86 4.90 -223.29 -1.10 -10.95 16 14 C 0.04 0.80 5.13 -2.30 -0.01 0.79 16 15 C -0.11 -1.66 6.44 -24.59 -0.16 -1.82 16 16 C -0.11 -1.44 3.10 -88.79 -0.28 -1.72 16 17 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.07 0.82 6.08 -3.83 -0.02 0.80 16 19 N -0.85 -8.34 9.54 -10.37 -0.10 -8.44 16 20 C 0.04 0.69 5.83 -2.83 -0.02 0.67 16 21 H 0.04 0.64 6.30 -51.93 -0.33 0.32 16 22 H 0.05 0.96 6.24 -51.93 -0.32 0.64 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.52 6.99 -51.93 -0.36 0.16 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 28 H 0.05 0.84 5.49 -51.93 -0.29 0.56 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 31 H 0.07 0.90 8.00 -51.93 -0.42 0.48 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.34 2.93 8.99 -39.29 -0.35 2.58 16 34 H 0.34 2.66 9.08 -39.29 -0.36 2.30 16 35 H 0.07 1.05 7.82 -51.93 -0.41 0.64 16 36 H 0.05 0.74 6.21 -51.93 -0.32 0.42 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -30.60 280.60 -8.15 -38.75 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.06 Total: 0.98 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.84 Total: -15.01 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.46 Total: -46.35 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.60 -8.15 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.720 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds