Wall clock time and date at job start Mon Mar 30 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47061 * 2 1 4 4 C 1.53000 * 109.47271 * 119.99972 * 2 1 3 5 5 C 1.50700 * 109.47098 * 185.00185 * 4 2 1 6 6 H 1.07992 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99669 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00160 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99882 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46978 * 89.99976 * 9 7 5 11 11 H 1.48505 * 109.47258 * 209.99867 * 9 7 5 12 12 H 1.48496 * 109.47158 * 329.99994 * 9 7 5 13 13 N 1.46901 * 109.47466 * 240.00563 * 2 1 3 14 14 C 1.47846 * 110.99343 * 301.37122 * 13 2 1 15 15 C 1.54908 * 104.79226 * 146.36628 * 14 13 2 16 16 C 1.55140 * 101.65570 * 322.92873 * 15 14 13 17 17 H 1.09005 * 110.85858 * 277.20507 * 16 15 14 18 18 C 1.52997 * 110.71067 * 154.03469 * 16 15 14 19 19 N 1.46900 * 109.46929 * 71.40362 * 18 16 15 20 20 C 1.47441 * 111.00194 * 62.21631 * 13 2 1 21 21 H 1.09005 * 109.47302 * 66.97332 * 1 2 3 22 22 H 1.08999 * 109.47082 * 186.96834 * 1 2 3 23 23 H 1.08996 * 109.47513 * 306.96917 * 1 2 3 24 24 H 1.09002 * 109.47192 * 305.00401 * 4 2 1 25 25 H 1.09000 * 109.46909 * 65.00017 * 4 2 1 26 26 H 0.97003 * 120.00186 * 180.02562 * 8 7 5 27 27 H 1.08996 * 110.37381 * 265.19042 * 14 13 2 28 28 H 1.08994 * 110.37952 * 27.42869 * 14 13 2 29 29 H 1.09006 * 110.99477 * 204.84115 * 15 14 13 30 30 H 1.08999 * 110.99419 * 81.02023 * 15 14 13 31 31 H 1.08995 * 109.47142 * 311.40350 * 18 16 15 32 32 H 1.09001 * 109.47470 * 191.40311 * 18 16 15 33 33 H 1.00901 * 111.00036 * 56.04470 * 19 18 16 34 34 H 1.00900 * 111.00290 * 180.02562 * 19 18 16 35 35 H 1.08999 * 109.88973 * 117.34136 * 20 13 2 36 36 H 1.08995 * 110.02379 * 356.22089 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1935 2.3578 8 7 3.5764 -1.8378 3.2995 9 14 6.0920 -1.0610 2.4369 10 1 6.4697 0.1611 3.1912 11 1 6.6447 -2.2566 3.1228 12 1 6.6416 -0.9822 1.0596 13 7 2.0197 -0.6924 -1.1995 14 6 1.5189 -2.0825 -1.2503 15 6 1.3245 -2.3780 -2.7584 16 6 0.8088 -1.0115 -3.2817 17 1 -0.2638 -0.9118 -3.1150 18 6 1.1422 -0.8394 -4.7649 19 7 0.2971 -1.7367 -5.5640 20 6 1.5910 0.0063 -2.4250 21 1 -0.3634 0.4020 -0.9458 22 1 -0.3633 -1.0201 0.1247 23 1 -0.3634 0.6180 0.8210 24 1 1.6053 -0.2618 2.1370 25 1 1.7517 -1.7715 1.2055 26 1 4.0608 -2.2446 4.0349 27 1 2.2516 -2.7658 -0.8211 28 1 0.5697 -2.1635 -0.7207 29 1 0.5806 -3.1601 -2.9105 30 1 2.2708 -2.6444 -3.2293 31 1 2.1912 -1.0834 -4.9323 32 1 0.9576 0.1932 -5.0614 33 1 -0.6810 -1.5736 -5.3775 34 1 0.4986 -1.6421 -6.5482 35 1 2.4632 0.3606 -2.9743 36 1 0.9472 0.8478 -2.1691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:04 Heat of formation + Delta-G solvation = -28.666259 kcal Electronic energy + Delta-G solvation = -14771.814596 eV Core-core repulsion = 12482.258608 eV Total energy + Delta-G solvation = -2289.555988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53356 -36.77051 -34.93414 -33.48791 -30.25130 -29.85774 -29.01772 -25.42209 -24.35411 -23.15014 -21.16283 -20.20300 -18.37417 -17.22302 -16.66914 -16.46538 -16.18574 -15.34230 -15.20480 -14.64414 -14.52234 -14.07299 -13.57885 -13.41225 -13.22796 -12.88012 -12.66563 -12.54631 -12.47288 -12.22575 -11.86034 -11.79953 -11.68522 -11.39425 -11.13050 -10.99352 -10.49044 -9.51457 -8.87929 -8.10746 -6.16120 1.40947 1.42334 1.54077 2.47122 3.19123 3.32206 3.52528 3.82743 3.90868 4.16883 4.23979 4.39930 4.46750 4.54023 4.57027 4.58709 4.71186 4.86026 4.90877 4.96656 5.12552 5.17026 5.19261 5.23580 5.32587 5.45650 5.50576 5.71403 5.89291 6.27924 6.33072 6.39005 6.56389 6.67396 6.97781 7.49947 9.01356 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042396 B = 0.007487 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.284578 B = 3738.816693 C = 4010.769431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.036 3.964 5 C -0.502 4.502 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.527 5.527 14 C 0.044 3.956 15 C -0.099 4.099 16 C -0.095 4.095 17 H 0.078 0.922 18 C 0.080 3.920 19 N -0.856 5.856 20 C 0.043 3.957 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.057 0.943 24 H -0.009 1.009 25 H -0.006 1.006 26 H 0.259 0.741 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.346 0.654 34 H 0.350 0.650 35 H 0.070 0.930 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 2.688 -15.779 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.001 4.001 5 C -0.541 4.541 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.250 5.250 14 C -0.084 4.084 15 C -0.137 4.137 16 C -0.114 4.114 17 H 0.096 0.904 18 C -0.051 4.051 19 N -0.387 5.387 20 C -0.085 4.085 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.009 0.991 25 H 0.012 0.988 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.089 0.911 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.322 2.025 -15.199 16.586 hybrid contribution -0.215 0.726 0.329 0.825 sum -6.537 2.750 -14.870 16.474 Atomic orbital electron populations 1.22407 0.97103 1.01535 1.02102 1.21768 0.92141 0.97219 0.90971 0.91938 1.19033 0.95287 0.94236 0.91575 1.21493 0.93301 1.32515 1.06754 0.92566 1.25879 1.03073 0.95536 0.95675 1.70097 1.37166 1.37958 1.13036 0.85547 0.80381 0.77484 0.78210 1.19944 1.21122 1.19291 1.63567 1.58028 1.01951 1.01492 1.22946 0.97722 0.90393 0.97314 1.22541 1.01117 0.97324 0.92716 1.22310 0.99548 0.94666 0.94908 0.90357 1.21639 0.97810 0.94311 0.91366 1.58618 1.09686 1.58834 1.11561 1.22897 0.98397 0.96551 0.90641 0.91158 0.93217 0.92354 0.99087 0.98753 0.93229 0.93780 0.93866 0.90244 0.91705 0.91515 0.94392 0.84143 0.83625 0.91147 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 8.55 71.98 0.62 -5.27 16 2 C 0.09 3.69 2.16 44.91 0.10 3.79 16 3 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 4 C 0.04 1.93 4.34 29.85 0.13 2.06 16 5 C -0.50 -29.44 8.84 25.60 0.23 -29.22 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 8 N -0.94 -58.93 13.29 21.45 0.28 -58.65 16 9 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.53 -20.58 4.90 -860.37 -4.22 -24.80 16 14 C 0.04 1.64 5.13 86.77 0.45 2.09 16 15 C -0.10 -2.84 6.44 31.98 0.21 -2.63 16 16 C -0.09 -2.28 3.10 -9.61 -0.03 -2.31 16 17 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 18 C 0.08 1.54 6.08 86.30 0.52 2.07 16 19 N -0.86 -14.03 9.54 -186.73 -1.78 -15.81 16 20 C 0.04 1.27 5.83 86.65 0.51 1.78 16 21 H 0.07 1.98 6.30 -2.38 -0.02 1.97 16 22 H 0.05 1.73 6.24 -2.39 -0.01 1.72 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H -0.01 -0.34 6.99 -2.39 -0.02 -0.36 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 28 H 0.04 1.62 5.49 -2.39 -0.01 1.60 16 29 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.06 1.93 7.94 -2.39 -0.02 1.92 16 31 H 0.07 1.42 8.00 -2.39 -0.02 1.40 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.35 4.80 8.99 -89.69 -0.81 3.99 16 34 H 0.35 4.41 9.08 -89.69 -0.81 3.59 16 35 H 0.07 2.04 7.82 -2.39 -0.02 2.02 16 36 H 0.06 1.63 6.21 -2.39 -0.01 1.62 16 Total: -1.00 -66.46 280.60 -1.07 -67.53 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.56 Total: 10.75 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.18 Total: -27.51 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -5.72 Total: -99.26 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -66.46 -1.07 -67.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.860 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds