Wall clock time and date at job start Mon Mar 30 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47534 * 2 1 4 4 C 1.53002 * 109.46907 * 240.00331 * 2 1 3 5 5 C 1.50693 * 109.47337 * 65.50124 * 4 2 1 6 6 H 1.08006 * 120.00018 * 5.04833 * 5 4 2 7 7 C 1.37879 * 120.00420 * 185.05084 * 5 4 2 8 8 N 1.31515 * 119.99910 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00408 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46869 * 59.99662 * 9 7 5 11 11 H 1.48500 * 109.47241 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46865 * 300.00186 * 9 7 5 13 13 N 1.46894 * 109.47761 * 120.00146 * 2 1 3 14 14 C 1.48561 * 111.00338 * 183.26917 * 13 2 1 15 15 C 1.54380 * 104.69777 * 159.09873 * 14 13 2 16 16 C 1.54254 * 105.06452 * 336.08910 * 15 14 13 17 17 H 1.08998 * 110.33074 * 118.89425 * 16 15 14 18 18 C 1.53002 * 110.32518 * 241.10636 * 16 15 14 19 19 N 1.46898 * 109.46960 * 293.54200 * 18 16 15 20 20 C 1.48857 * 111.13415 * 298.59035 * 13 2 1 21 21 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46727 * 299.99725 * 1 2 3 23 23 H 1.08998 * 109.47525 * 59.99861 * 1 2 3 24 24 H 1.09003 * 109.47056 * 185.49936 * 4 2 1 25 25 H 1.09000 * 109.47155 * 305.50020 * 4 2 1 26 26 H 0.97000 * 120.00512 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.40997 * 40.26226 * 14 13 2 28 28 H 1.08997 * 110.41469 * 277.93487 * 14 13 2 29 29 H 1.09004 * 110.32438 * 94.98550 * 15 14 13 30 30 H 1.09005 * 110.32343 * 217.08777 * 15 14 13 31 31 H 1.08997 * 109.47451 * 53.54608 * 18 16 15 32 32 H 1.09005 * 109.46579 * 173.54530 * 18 16 15 33 33 H 1.00903 * 111.00093 * 180.02562 * 19 18 16 34 34 H 1.00904 * 110.99796 * 303.95515 * 19 18 16 35 35 H 1.09003 * 110.39022 * 82.21197 * 20 13 2 36 36 H 1.08998 * 110.49256 * 319.84940 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6519 0.0635 -2.4759 6 1 1.1692 1.0241 -2.3721 7 6 1.9129 -0.4448 -3.7307 8 7 2.5010 -1.6143 -3.8572 9 14 1.4313 0.5276 -5.2512 10 1 2.1298 1.8380 -5.2425 11 1 1.8187 -0.2313 -6.4675 12 1 -0.0371 0.7494 -5.2523 13 7 2.0197 -0.6925 1.1993 14 6 3.5027 -0.6441 1.2738 15 6 3.8287 -0.8977 2.7613 16 6 2.5588 -0.4743 3.5278 17 1 2.1437 -1.3231 4.0712 18 6 2.8767 0.6708 4.4915 19 7 3.7762 0.1869 5.5472 20 6 1.5723 -0.0005 2.4390 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.1255 -0.8073 -1.2015 25 1 1.5984 -1.7165 -1.3000 26 1 2.6844 -1.9722 -4.7399 27 1 3.8670 0.3362 0.9665 28 1 3.9403 -1.4239 0.6505 29 1 4.0370 -1.9545 2.9284 30 1 4.6797 -0.2911 3.0711 31 1 3.3598 1.4814 3.9459 32 1 1.9525 1.0351 4.9402 33 1 4.0010 0.9251 6.1973 34 1 3.3777 -0.6071 6.0258 35 1 0.5546 -0.2968 2.6931 36 1 1.6329 1.0808 2.3155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:07 Heat of formation + Delta-G solvation = -12.905101 kcal Electronic energy + Delta-G solvation = -14535.704121 eV Core-core repulsion = 12246.831589 eV Total energy + Delta-G solvation = -2288.872533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.94196 -35.54131 -33.42427 -31.91705 -29.00949 -28.68781 -26.58845 -24.30657 -22.79507 -21.43163 -19.71953 -18.91846 -16.57573 -15.96448 -15.56022 -14.65715 -14.56731 -14.46202 -13.70351 -13.52192 -12.72605 -12.42214 -12.18264 -11.81802 -11.73879 -11.33534 -11.01898 -10.83418 -10.79972 -10.62554 -10.50279 -10.31805 -10.22178 -9.79662 -9.15486 -9.07646 -8.81566 -8.30046 -7.77989 -5.95656 -3.97481 3.35114 3.39681 3.41757 4.33494 4.47435 4.62894 4.95664 5.09354 5.14116 5.39819 5.47316 5.62820 5.64619 5.74221 5.94833 6.04018 6.11060 6.12345 6.27120 6.36866 6.44920 6.51081 6.59200 6.71241 6.95523 6.96497 7.15814 7.26443 7.52548 7.60166 7.80883 7.91761 8.12940 8.48250 9.08853 9.65333 11.15728 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061893 B = 0.006231 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.288711 B = 4492.881742 C = 4680.135740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.075 3.925 3 H 0.027 0.973 4 C 0.034 3.966 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.506 5.506 14 C 0.035 3.965 15 C -0.108 4.108 16 C -0.091 4.091 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.849 5.849 20 C 0.037 3.963 21 H 0.054 0.946 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.013 0.987 25 H 0.027 0.973 26 H 0.260 0.740 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.338 0.662 34 H 0.339 0.661 35 H 0.073 0.927 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 3.518 15.297 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.033 4.033 3 H 0.045 0.955 4 C -0.004 4.004 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.230 5.230 14 C -0.093 4.093 15 C -0.146 4.146 16 C -0.110 4.110 17 H 0.091 0.909 18 C -0.062 4.062 19 N -0.378 5.378 20 C -0.092 4.092 21 H 0.073 0.927 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.331 2.706 14.504 14.758 hybrid contribution -0.765 1.620 -0.287 1.815 sum -0.434 4.326 14.217 14.867 Atomic orbital electron populations 1.21708 0.95355 1.01530 0.99980 1.22025 0.95108 0.95247 0.90895 0.95518 1.19111 0.96045 0.96150 0.89064 1.21159 1.39117 1.04423 0.90942 0.92848 1.24982 0.95331 0.94973 0.98975 1.69962 1.42317 1.17664 1.23335 0.86692 0.78939 0.80037 0.82521 1.20359 1.21301 1.20264 1.65560 1.06682 1.49323 1.01444 1.23064 0.89563 1.00649 0.96051 1.22256 0.96874 1.01428 0.94057 1.21895 0.96374 0.97224 0.95511 0.90922 1.21881 0.93910 0.97292 0.93134 1.58686 1.49273 1.12043 1.17801 1.23111 0.98545 0.96467 0.91059 0.92722 0.95210 0.91599 0.96839 0.95433 0.92992 0.94378 0.90003 0.91722 0.91038 0.91086 0.95781 0.85006 0.84890 0.90868 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.91 37.15 0.33 -2.22 16 2 C 0.07 1.63 1.86 -67.72 -0.13 1.50 16 3 H 0.03 0.60 7.99 -51.93 -0.41 0.18 16 4 C 0.03 0.89 4.48 -27.89 -0.13 0.77 16 5 C -0.52 -14.69 8.31 -34.44 -0.29 -14.98 16 6 H 0.05 1.47 7.29 -52.48 -0.38 1.09 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.51 -9.65 5.21 -221.77 -1.15 -10.81 16 14 C 0.03 0.63 5.47 -2.18 -0.01 0.61 16 15 C -0.11 -1.56 6.46 -25.35 -0.16 -1.73 16 16 C -0.09 -1.18 3.25 -89.24 -0.29 -1.47 16 17 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 18 C 0.07 0.75 5.87 -3.82 -0.02 0.73 16 19 N -0.85 -7.98 9.35 -10.37 -0.10 -8.07 16 20 C 0.04 0.57 4.96 -2.02 -0.01 0.56 16 21 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 22 H 0.03 0.50 6.99 -51.93 -0.36 0.14 16 23 H 0.07 1.37 7.09 -51.93 -0.37 1.00 16 24 H 0.01 0.37 6.76 -51.93 -0.35 0.02 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.04 0.70 7.92 -51.93 -0.41 0.29 16 28 H 0.08 1.59 7.55 -51.93 -0.39 1.20 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.00 7.64 -51.93 -0.40 0.60 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.34 2.54 9.08 -39.29 -0.36 2.18 16 34 H 0.34 2.79 8.99 -39.29 -0.35 2.44 16 35 H 0.07 1.08 7.69 -51.93 -0.40 0.68 16 36 H 0.04 0.57 7.68 -51.93 -0.40 0.17 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -30.25 283.56 -8.32 -38.57 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.26 Total: 0.29 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.80 Total: -14.64 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.51 Total: -45.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.25 -8.32 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.669 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds