Wall clock time and date at job start Mon Mar 30 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47534 * 2 1 4 4 C 1.53002 * 109.46907 * 240.00331 * 2 1 3 5 5 C 1.50693 * 109.47337 * 65.50124 * 4 2 1 6 6 H 1.08006 * 120.00018 * 5.04833 * 5 4 2 7 7 C 1.37879 * 120.00420 * 185.05084 * 5 4 2 8 8 N 1.31515 * 119.99910 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00408 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46869 * 59.99662 * 9 7 5 11 11 H 1.48500 * 109.47241 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46865 * 300.00186 * 9 7 5 13 13 N 1.46894 * 109.47761 * 120.00146 * 2 1 3 14 14 C 1.48561 * 111.00338 * 183.26917 * 13 2 1 15 15 C 1.54380 * 104.69777 * 159.09873 * 14 13 2 16 16 C 1.54254 * 105.06452 * 336.08910 * 15 14 13 17 17 H 1.08998 * 110.33074 * 118.89425 * 16 15 14 18 18 C 1.53002 * 110.32518 * 241.10636 * 16 15 14 19 19 N 1.46898 * 109.46960 * 293.54200 * 18 16 15 20 20 C 1.48857 * 111.13415 * 298.59035 * 13 2 1 21 21 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46727 * 299.99725 * 1 2 3 23 23 H 1.08998 * 109.47525 * 59.99861 * 1 2 3 24 24 H 1.09003 * 109.47056 * 185.49936 * 4 2 1 25 25 H 1.09000 * 109.47155 * 305.50020 * 4 2 1 26 26 H 0.97000 * 120.00512 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.40997 * 40.26226 * 14 13 2 28 28 H 1.08997 * 110.41469 * 277.93487 * 14 13 2 29 29 H 1.09004 * 110.32438 * 94.98550 * 15 14 13 30 30 H 1.09005 * 110.32343 * 217.08777 * 15 14 13 31 31 H 1.08997 * 109.47451 * 53.54608 * 18 16 15 32 32 H 1.09005 * 109.46579 * 173.54530 * 18 16 15 33 33 H 1.00903 * 111.00093 * 180.02562 * 19 18 16 34 34 H 1.00904 * 110.99796 * 303.95515 * 19 18 16 35 35 H 1.09003 * 110.39022 * 82.21197 * 20 13 2 36 36 H 1.08998 * 110.49256 * 319.84940 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6519 0.0635 -2.4759 6 1 1.1692 1.0241 -2.3721 7 6 1.9129 -0.4448 -3.7307 8 7 2.5010 -1.6143 -3.8572 9 14 1.4313 0.5276 -5.2512 10 1 2.1298 1.8380 -5.2425 11 1 1.8187 -0.2313 -6.4675 12 1 -0.0371 0.7494 -5.2523 13 7 2.0197 -0.6925 1.1993 14 6 3.5027 -0.6441 1.2738 15 6 3.8287 -0.8977 2.7613 16 6 2.5588 -0.4743 3.5278 17 1 2.1437 -1.3231 4.0712 18 6 2.8767 0.6708 4.4915 19 7 3.7762 0.1869 5.5472 20 6 1.5723 -0.0005 2.4390 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.1255 -0.8073 -1.2015 25 1 1.5984 -1.7165 -1.3000 26 1 2.6844 -1.9722 -4.7399 27 1 3.8670 0.3362 0.9665 28 1 3.9403 -1.4239 0.6505 29 1 4.0370 -1.9545 2.9284 30 1 4.6797 -0.2911 3.0711 31 1 3.3598 1.4814 3.9459 32 1 1.9525 1.0351 4.9402 33 1 4.0010 0.9251 6.1973 34 1 3.3777 -0.6071 6.0258 35 1 0.5546 -0.2968 2.6931 36 1 1.6329 1.0808 2.3155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:06 Heat of formation + Delta-G solvation = -35.370136 kcal Electronic energy + Delta-G solvation = -14536.678278 eV Core-core repulsion = 12246.831589 eV Total energy + Delta-G solvation = -2289.846690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30877 -36.90155 -35.07450 -33.63729 -30.35613 -30.21352 -28.38259 -25.84927 -24.28497 -22.94186 -20.96775 -20.51897 -18.64898 -17.16549 -16.78644 -16.40480 -15.99767 -15.51039 -15.30810 -14.90059 -14.22146 -13.98622 -13.91591 -13.35527 -13.12772 -12.88811 -12.84996 -12.64656 -12.36272 -12.22387 -11.90358 -11.80286 -11.65447 -11.35731 -11.20864 -11.05926 -10.53312 -9.54042 -9.31839 -8.18235 -6.28849 1.39681 1.42898 1.50706 2.40810 3.14130 3.15158 3.53937 3.80734 3.96813 4.08947 4.28073 4.35620 4.41127 4.53943 4.62148 4.66670 4.71176 4.77817 4.81873 5.04376 5.07516 5.16065 5.20140 5.25362 5.39815 5.42323 5.48235 5.68307 5.78423 6.04464 6.18684 6.27562 6.37392 6.66880 6.86983 7.39445 8.93954 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061893 B = 0.006231 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.288711 B = 4492.881742 C = 4680.135740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.085 3.915 3 H 0.021 0.979 4 C 0.043 3.957 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.521 5.521 14 C 0.033 3.967 15 C -0.097 4.097 16 C -0.082 4.082 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.855 5.855 20 C 0.037 3.963 21 H 0.045 0.955 22 H 0.064 0.936 23 H 0.053 0.947 24 H -0.015 1.015 25 H -0.008 1.008 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.351 0.649 34 H 0.347 0.653 35 H 0.085 0.915 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 4.844 16.600 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.024 4.024 3 H 0.039 0.961 4 C 0.005 3.995 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.190 1.190 13 N -0.245 5.245 14 C -0.096 4.096 15 C -0.135 4.135 16 C -0.101 4.101 17 H 0.102 0.898 18 C -0.055 4.055 19 N -0.386 5.386 20 C -0.091 4.091 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.004 0.996 25 H 0.010 0.990 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.104 0.896 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.506 4.043 15.840 16.356 hybrid contribution -0.464 1.164 -0.654 1.413 sum -0.970 5.207 15.186 16.083 Atomic orbital electron populations 1.21610 0.93698 1.01328 1.01112 1.21738 0.96331 0.94128 0.90157 0.96112 1.18929 0.94075 0.94812 0.91641 1.21545 1.39047 1.04842 0.91889 0.92122 1.25950 0.95086 0.95980 1.02636 1.70113 1.43484 1.19518 1.24262 0.85522 0.79137 0.78569 0.77950 1.19288 1.20912 1.18979 1.65477 1.07247 1.49839 1.01978 1.23040 0.89111 0.99134 0.98287 1.22171 0.98068 1.01813 0.91427 1.21851 0.94646 0.98483 0.95135 0.89835 1.21720 0.94833 0.95886 0.93036 1.58621 1.48981 1.12914 1.18124 1.23212 0.99765 0.96472 0.89696 0.93548 0.91678 0.92786 0.99629 0.98976 0.92852 0.95380 0.92752 0.91492 0.90223 0.91919 0.94233 0.83594 0.83959 0.89648 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 8.91 71.98 0.64 -4.04 16 2 C 0.08 3.72 1.86 44.92 0.08 3.80 16 3 H 0.02 0.94 7.99 -2.39 -0.02 0.92 16 4 C 0.04 2.37 4.48 29.85 0.13 2.50 16 5 C -0.53 -30.94 8.31 25.60 0.21 -30.73 16 6 H 0.06 3.35 7.29 -2.91 -0.02 3.32 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.93 -58.24 13.29 21.45 0.28 -57.95 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.52 -19.87 5.21 -855.55 -4.45 -24.32 16 14 C 0.03 1.19 5.47 86.45 0.47 1.67 16 15 C -0.10 -2.69 6.46 31.49 0.20 -2.49 16 16 C -0.08 -1.93 3.25 -9.90 -0.03 -1.97 16 17 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 18 C 0.08 1.43 5.87 86.30 0.51 1.94 16 19 N -0.86 -13.52 9.35 -186.72 -1.75 -15.27 16 20 C 0.04 1.05 4.96 86.39 0.43 1.48 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.06 2.06 6.99 -2.39 -0.02 2.04 16 23 H 0.05 2.21 7.09 -2.39 -0.02 2.19 16 24 H -0.01 -0.87 6.76 -2.39 -0.02 -0.89 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.03 1.07 7.92 -2.39 -0.02 1.05 16 28 H 0.05 2.25 7.55 -2.39 -0.02 2.23 16 29 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 30 H 0.08 2.10 7.64 -2.38 -0.02 2.08 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.35 4.22 9.08 -89.69 -0.81 3.40 16 34 H 0.35 4.62 8.99 -89.69 -0.81 3.81 16 35 H 0.09 2.26 7.69 -2.39 -0.02 2.24 16 36 H 0.04 1.18 7.68 -2.39 -0.02 1.16 16 Total: -1.00 -66.10 283.56 -1.34 -67.45 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -0.57 Total: 10.49 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 3.11 Total: -27.30 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -5.91 Total: -97.54 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.10 -1.34 -67.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.077 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds