Wall clock time and date at job start Mon Mar 30 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47320 * 89.99850 * 9 7 5 11 11 H 1.48505 * 109.47486 * 209.99782 * 9 7 5 12 12 H 1.48495 * 109.47140 * 329.99955 * 9 7 5 13 13 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 14 14 C 1.46958 * 110.99861 * 58.80408 * 13 2 1 15 15 C 1.53051 * 109.36571 * 176.80927 * 14 13 2 16 16 N 1.46956 * 109.36259 * 58.40158 * 15 14 13 17 17 C 1.46958 * 110.88044 * 300.67976 * 16 15 14 18 18 C 1.46949 * 111.00255 * 295.00207 * 13 2 1 19 19 H 1.08997 * 109.49021 * 63.22319 * 18 13 2 20 20 C 1.52996 * 109.49105 * 303.15317 * 18 13 2 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 25 25 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 26 26 H 0.96998 * 120.00442 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.48868 * 296.77755 * 14 13 2 28 28 H 1.09001 * 109.48850 * 56.83805 * 14 13 2 29 29 H 1.08994 * 109.48848 * 298.42785 * 15 14 13 30 30 H 1.09000 * 109.50543 * 178.37698 * 15 14 13 31 31 H 1.00897 * 111.00111 * 64.54955 * 16 15 14 32 32 H 1.09001 * 109.48370 * 299.35394 * 17 16 15 33 33 H 1.09002 * 109.50531 * 179.30414 * 17 16 15 34 34 H 1.08996 * 109.47129 * 60.00176 * 20 18 13 35 35 H 1.09004 * 109.47502 * 179.97438 * 20 18 13 36 36 H 1.09005 * 109.47228 * 299.99966 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 5.5412 -1.1011 -2.4128 9 14 3.3016 -2.1087 -3.6952 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1896 -4.2431 12 1 2.0655 -2.7004 -3.1232 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2480 15 6 2.1202 -2.7847 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2434 -0.6697 3.6373 18 6 1.6485 0.0395 2.4185 19 1 0.5627 0.0686 2.5089 20 6 2.1933 1.4672 2.3425 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2617 -2.1369 26 1 6.0257 -1.5085 -3.1478 27 1 0.4379 -2.0704 1.3250 28 1 1.8233 -2.6002 0.3403 29 1 3.2059 -2.8139 2.3763 30 1 1.7324 -3.8020 2.5210 31 1 0.7508 -2.0750 3.8311 32 1 3.3307 -0.6748 3.5603 33 1 1.9456 -0.1448 4.5450 34 1 1.7709 1.9715 1.4734 35 1 1.9175 2.0100 3.2466 36 1 3.2793 1.4375 2.2532 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:11 Heat of formation + Delta-G solvation = 5.286770 kcal Electronic energy + Delta-G solvation = -15289.721459 eV Core-core repulsion = 13001.637785 eV Total energy + Delta-G solvation = -2288.083674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43336 -35.39047 -32.82354 -32.08947 -30.14858 -27.87473 -26.85101 -24.65047 -22.84620 -21.71380 -20.37328 -18.58670 -16.58086 -15.95650 -15.21277 -14.88693 -14.62616 -14.03863 -13.84134 -12.98565 -12.65334 -12.58298 -12.22779 -11.87110 -11.86041 -11.78172 -11.48442 -11.25188 -10.96833 -10.69983 -10.58488 -10.46455 -10.22641 -9.59558 -9.49881 -9.03250 -8.43855 -8.18297 -7.50458 -5.92130 -3.86417 3.33536 3.41779 3.43490 4.33331 4.52543 4.54741 5.18316 5.35219 5.42683 5.44450 5.48542 5.55953 5.70110 5.75629 5.79809 5.87423 5.89967 6.00650 6.13859 6.21673 6.38948 6.40706 6.44351 6.53700 6.57152 6.81122 7.08469 7.16245 7.33836 7.55118 7.78348 7.82205 7.94699 8.70946 9.20724 9.70750 11.21820 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033943 B = 0.009899 C = 0.009606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.726483 B = 2827.859452 C = 2914.155906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.081 0.919 4 C -0.008 4.008 5 C -0.490 4.490 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.499 5.499 14 C 0.018 3.982 15 C 0.058 3.942 16 N -0.688 5.688 17 C 0.065 3.935 18 C 0.041 3.959 19 H 0.029 0.971 20 C -0.142 4.142 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.260 0.740 27 H 0.021 0.979 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.330 0.670 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.019 0.532 9.189 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.016 4.016 3 H 0.099 0.901 4 C -0.045 4.045 5 C -0.529 4.529 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.223 5.223 14 C -0.112 4.112 15 C -0.071 4.071 16 N -0.315 5.315 17 C -0.065 4.065 18 C -0.069 4.069 19 H 0.047 0.953 20 C -0.200 4.200 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.787 0.208 9.442 12.900 hybrid contribution -1.977 -0.081 -1.578 2.531 sum -10.764 0.127 7.864 13.332 Atomic orbital electron populations 1.22549 0.99999 1.01166 1.00904 1.21763 0.89681 0.99075 0.91129 0.90075 1.19712 0.98062 0.95241 0.91516 1.21036 0.89303 1.33885 1.08636 0.90294 1.25009 0.94664 0.96291 0.97785 1.69908 1.06391 1.46101 1.32285 0.86915 0.80160 0.80081 0.82822 1.20615 1.21576 1.19432 1.62222 1.58723 1.00766 1.00591 1.22828 0.95926 0.91383 1.01027 1.22116 1.02283 0.96077 0.86658 1.60817 1.18434 1.14437 1.37845 1.22137 1.01341 0.87544 0.95453 1.22354 0.96699 0.95125 0.92736 0.95276 1.21804 1.02657 0.94687 1.00885 0.93109 0.92550 0.93806 0.96558 0.96960 0.93052 0.96067 0.89046 0.89671 0.91032 0.85363 0.89932 0.91177 0.92373 0.93084 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.49 37.16 0.32 -2.76 16 2 C 0.09 1.80 1.97 -67.72 -0.13 1.66 16 3 H 0.08 1.65 5.97 -51.93 -0.31 1.34 16 4 C -0.01 -0.19 3.34 -27.89 -0.09 -0.28 16 5 C -0.49 -13.83 9.39 -34.44 -0.32 -14.15 16 6 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 9 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 13 N -0.50 -9.27 4.23 -218.58 -0.92 -10.20 16 14 C 0.02 0.31 4.82 -3.77 -0.02 0.29 16 15 C 0.06 0.89 6.72 -3.77 -0.03 0.87 16 16 N -0.69 -9.59 6.91 -113.64 -0.79 -10.37 16 17 C 0.07 0.92 6.00 -3.77 -0.02 0.90 16 18 C 0.04 0.63 2.19 -67.66 -0.15 0.48 16 19 H 0.03 0.44 6.60 -51.93 -0.34 0.10 16 20 C -0.14 -2.08 8.87 37.16 0.33 -1.75 16 21 H 0.05 0.82 6.45 -51.93 -0.34 0.49 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 24 H 0.02 0.39 5.17 -51.93 -0.27 0.12 16 25 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.34 6.46 -51.93 -0.34 0.01 16 28 H 0.09 1.80 6.07 -51.93 -0.32 1.49 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.33 4.08 8.89 -39.29 -0.35 3.73 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.88 6.25 -51.93 -0.32 0.55 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 269.90 15.07 4.07 4.07 Total: -1.00 -30.10 269.90 -7.62 -37.72 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.86 Total: 2.04 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.22 Total: -13.01 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.94 Total: -48.03 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.10 -7.62 -37.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.005 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds