Wall clock time and date at job start Mon Mar 30 2020 02:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47162 * 2 1 4 4 C 1.52995 * 109.47253 * 119.99980 * 2 1 3 5 5 C 1.50705 * 109.47176 * 182.85619 * 4 2 1 6 6 H 1.08002 * 119.99998 * 355.80706 * 5 4 2 7 7 C 1.37875 * 120.00066 * 175.80635 * 5 4 2 8 8 N 1.31519 * 120.00155 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00154 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47748 * 89.99636 * 9 7 5 11 11 H 1.48499 * 109.47346 * 209.99911 * 9 7 5 12 12 H 1.48508 * 109.47051 * 329.99702 * 9 7 5 13 13 N 1.46899 * 109.47076 * 239.99781 * 2 1 3 14 14 C 1.46960 * 110.99920 * 87.06676 * 13 2 1 15 15 C 1.53050 * 109.36452 * 176.81455 * 14 13 2 16 16 N 1.46950 * 109.36360 * 58.40265 * 15 14 13 17 17 C 1.46955 * 110.88478 * 300.67785 * 16 15 14 18 18 C 1.46961 * 110.99990 * 323.27357 * 13 2 1 19 19 H 1.09002 * 109.48907 * 63.21514 * 18 13 2 20 20 C 1.53002 * 109.48678 * 303.15506 * 18 13 2 21 21 H 1.08999 * 109.47360 * 186.06781 * 1 2 3 22 22 H 1.09000 * 109.46738 * 306.06429 * 1 2 3 23 23 H 1.08991 * 109.47077 * 66.05982 * 1 2 3 24 24 H 1.09000 * 109.47747 * 62.85723 * 4 2 1 25 25 H 1.09007 * 109.47314 * 302.85240 * 4 2 1 26 26 H 0.96999 * 119.99956 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.49195 * 296.78453 * 14 13 2 28 28 H 1.09000 * 109.48357 * 56.82771 * 14 13 2 29 29 H 1.08997 * 109.48986 * 178.37815 * 15 14 13 30 30 H 1.09001 * 109.48812 * 298.41141 * 15 14 13 31 31 H 1.00899 * 110.99830 * 64.55473 * 16 15 14 32 32 H 1.08994 * 109.49294 * 179.28593 * 17 16 15 33 33 H 1.09002 * 109.49010 * 299.33348 * 17 16 15 34 34 H 1.08999 * 109.47141 * 71.66902 * 20 18 13 35 35 H 1.08999 * 109.46971 * 191.67126 * 20 18 13 36 36 H 1.08999 * 109.46952 * 311.66902 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5454 -0.6602 1.2851 6 1 4.0876 -0.2171 0.4628 7 6 4.2304 -1.1699 2.3676 8 7 5.5442 -1.1171 2.3987 9 14 3.2926 -1.9368 3.7895 10 1 3.1102 -3.3887 3.5365 11 1 4.0581 -1.7460 5.0476 12 1 1.9640 -1.2854 3.9148 13 7 2.0196 -0.6925 -1.1994 14 6 2.1290 0.2341 -2.3348 15 6 2.7159 -0.5060 -3.5391 16 7 1.8547 -1.6480 -3.8762 17 6 1.7453 -2.5747 -2.7409 18 6 1.1584 -1.8346 -1.5366 19 1 0.1586 -1.4763 -1.7818 20 6 1.0810 -2.7860 -0.3409 21 1 -0.3634 -1.0219 0.1086 22 1 -0.3633 0.6050 0.8307 23 1 -0.3633 0.4170 -0.9392 24 1 1.7192 -1.7626 1.2241 25 1 1.6355 -0.2378 2.1385 26 1 6.0261 -1.4761 3.1602 27 1 1.1403 0.6160 -2.5891 28 1 2.7812 1.0646 -2.0647 29 1 2.7711 0.1719 -4.3909 30 1 3.7158 -0.8639 -3.2940 31 1 0.9436 -1.3370 -4.1783 32 1 1.0928 -3.4050 -3.0107 33 1 2.7340 -2.9568 -2.4868 34 1 0.4817 -2.3308 0.4475 35 1 0.6204 -3.7237 -0.6519 36 1 2.0859 -2.9815 0.0335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:17 Heat of formation + Delta-G solvation = 20.398403 kcal Electronic energy + Delta-G solvation = -15413.239609 eV Core-core repulsion = 13125.811225 eV Total energy + Delta-G solvation = -2287.428384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56343 -35.55114 -32.47719 -32.10891 -30.37270 -27.91493 -27.08045 -24.23322 -22.76257 -21.80303 -20.20856 -18.99553 -16.56726 -15.84555 -15.27147 -14.99910 -14.49510 -13.96338 -13.64272 -13.19549 -12.78007 -12.42855 -12.28615 -11.99691 -11.79217 -11.61571 -11.45375 -11.05643 -10.81923 -10.72605 -10.53465 -10.50515 -9.84564 -9.57424 -9.56265 -8.91077 -8.37252 -8.17500 -7.49964 -5.88015 -3.80613 3.36106 3.44141 3.45890 4.32098 4.52609 4.56244 5.24629 5.38252 5.40128 5.44432 5.49899 5.55027 5.67812 5.74491 5.80604 5.86652 5.91057 6.09001 6.16244 6.26322 6.31393 6.39117 6.40777 6.57323 6.83262 6.90068 7.11740 7.18084 7.41314 7.53896 7.81351 7.84153 7.98798 8.76777 9.24720 9.75321 11.26264 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035708 B = 0.010292 C = 0.009796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.946462 B = 2719.783043 C = 2857.711012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.068 0.932 4 C -0.027 4.027 5 C -0.484 4.484 6 H 0.076 0.924 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.870 3.130 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.500 5.500 14 C 0.019 3.981 15 C 0.059 3.941 16 N -0.688 5.688 17 C 0.063 3.937 18 C 0.050 3.950 19 H 0.031 0.969 20 C -0.154 4.154 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.013 0.987 26 H 0.259 0.741 27 H 0.018 0.982 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.330 0.670 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 -0.374 -8.716 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.011 4.011 3 H 0.086 0.914 4 C -0.064 4.064 5 C -0.522 4.522 6 H 0.094 0.906 7 C -0.139 4.139 8 N -0.551 5.551 9 Si 0.698 3.302 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.224 5.224 14 C -0.111 4.111 15 C -0.070 4.070 16 N -0.315 5.315 17 C -0.067 4.067 18 C -0.060 4.060 19 H 0.048 0.952 20 C -0.211 4.211 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.304 -0.965 -8.832 12.865 hybrid contribution -1.804 0.525 1.368 2.324 sum -11.109 -0.440 -7.464 13.391 Atomic orbital electron populations 1.22687 0.99558 1.02086 1.00357 1.21689 0.89976 0.97838 0.91611 0.91424 1.20192 0.98066 0.96904 0.91221 1.21030 0.89242 1.37434 1.04510 0.90571 1.25005 0.94636 0.96273 0.98012 1.69914 1.06313 1.47908 1.30950 0.86939 0.80437 0.80022 0.82774 1.20533 1.21732 1.19322 1.62286 1.49661 1.07762 1.02735 1.22824 0.98773 0.96442 0.93065 1.22092 0.98266 0.91538 0.95145 1.60805 1.17222 1.17715 1.35751 1.22183 1.02327 0.94482 0.87715 1.22274 0.93850 0.93094 0.96777 0.95151 1.22321 1.04122 0.97267 0.97414 0.91768 0.92752 0.94304 0.94389 0.96924 0.93160 0.96347 0.90400 0.91041 0.89718 0.85357 0.91106 0.89722 0.91397 0.93735 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 7.86 37.16 0.29 -2.78 16 2 C 0.10 1.91 2.22 -67.72 -0.15 1.76 16 3 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 4 C -0.03 -0.62 3.17 -27.88 -0.09 -0.71 16 5 C -0.48 -13.64 9.35 -34.44 -0.32 -13.97 16 6 H 0.08 2.37 7.94 -52.49 -0.42 1.95 16 7 C 0.06 1.75 5.47 -17.82 -0.10 1.65 16 8 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 9 Si 0.87 21.88 27.55 -169.99 -4.68 17.19 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.47 6.42 56.52 0.36 -6.11 16 13 N -0.50 -9.28 4.06 -218.56 -0.89 -10.17 16 14 C 0.02 0.30 5.44 -3.77 -0.02 0.28 16 15 C 0.06 0.85 6.72 -3.77 -0.03 0.83 16 16 N -0.69 -9.48 6.91 -113.64 -0.79 -10.26 16 17 C 0.06 0.93 5.98 -3.77 -0.02 0.90 16 18 C 0.05 0.81 1.94 -67.65 -0.13 0.68 16 19 H 0.03 0.47 6.50 -51.93 -0.34 0.13 16 20 C -0.15 -2.59 7.20 37.16 0.27 -2.33 16 21 H 0.06 1.02 4.71 -51.93 -0.24 0.77 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.58 7.28 -51.93 -0.38 0.20 16 24 H 0.04 0.87 3.30 -51.93 -0.17 0.70 16 25 H 0.01 0.30 6.91 -51.92 -0.36 -0.05 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.02 0.27 7.56 -51.93 -0.39 -0.12 16 28 H 0.08 1.29 7.98 -51.93 -0.41 0.87 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.33 4.00 8.89 -39.29 -0.35 3.65 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.17 4.14 -51.93 -0.22 0.95 16 35 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.08 1.72 7.19 -51.93 -0.37 1.35 16 LS Contribution 265.69 15.07 4.00 4.00 Total: -1.00 -30.31 265.69 -7.64 -37.94 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.76 Total: 2.67 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.30 Total: -13.68 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.90 Total: -48.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.68 Total: 17.19 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.31 -7.64 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.341 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds