Wall clock time and date at job start Mon Mar 30 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47162 * 2 1 4 4 C 1.52995 * 109.47253 * 119.99980 * 2 1 3 5 5 C 1.50705 * 109.47176 * 182.85619 * 4 2 1 6 6 H 1.08002 * 119.99998 * 355.80706 * 5 4 2 7 7 C 1.37875 * 120.00066 * 175.80635 * 5 4 2 8 8 N 1.31519 * 120.00155 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00154 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47748 * 89.99636 * 9 7 5 11 11 H 1.48499 * 109.47346 * 209.99911 * 9 7 5 12 12 H 1.48508 * 109.47051 * 329.99702 * 9 7 5 13 13 N 1.46899 * 109.47076 * 239.99781 * 2 1 3 14 14 C 1.46960 * 110.99920 * 87.06676 * 13 2 1 15 15 C 1.53050 * 109.36452 * 176.81455 * 14 13 2 16 16 N 1.46950 * 109.36360 * 58.40265 * 15 14 13 17 17 C 1.46955 * 110.88478 * 300.67785 * 16 15 14 18 18 C 1.46961 * 110.99990 * 323.27357 * 13 2 1 19 19 H 1.09002 * 109.48907 * 63.21514 * 18 13 2 20 20 C 1.53002 * 109.48678 * 303.15506 * 18 13 2 21 21 H 1.08999 * 109.47360 * 186.06781 * 1 2 3 22 22 H 1.09000 * 109.46738 * 306.06429 * 1 2 3 23 23 H 1.08991 * 109.47077 * 66.05982 * 1 2 3 24 24 H 1.09000 * 109.47747 * 62.85723 * 4 2 1 25 25 H 1.09007 * 109.47314 * 302.85240 * 4 2 1 26 26 H 0.96999 * 119.99956 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.49195 * 296.78453 * 14 13 2 28 28 H 1.09000 * 109.48357 * 56.82771 * 14 13 2 29 29 H 1.08997 * 109.48986 * 178.37815 * 15 14 13 30 30 H 1.09001 * 109.48812 * 298.41141 * 15 14 13 31 31 H 1.00899 * 110.99830 * 64.55473 * 16 15 14 32 32 H 1.08994 * 109.49294 * 179.28593 * 17 16 15 33 33 H 1.09002 * 109.49010 * 299.33348 * 17 16 15 34 34 H 1.08999 * 109.47141 * 71.66902 * 20 18 13 35 35 H 1.08999 * 109.46971 * 191.67126 * 20 18 13 36 36 H 1.08999 * 109.46952 * 311.66902 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5454 -0.6602 1.2851 6 1 4.0876 -0.2171 0.4628 7 6 4.2304 -1.1699 2.3676 8 7 5.5442 -1.1171 2.3987 9 14 3.2926 -1.9368 3.7895 10 1 3.1102 -3.3887 3.5365 11 1 4.0581 -1.7460 5.0476 12 1 1.9640 -1.2854 3.9148 13 7 2.0196 -0.6925 -1.1994 14 6 2.1290 0.2341 -2.3348 15 6 2.7159 -0.5060 -3.5391 16 7 1.8547 -1.6480 -3.8762 17 6 1.7453 -2.5747 -2.7409 18 6 1.1584 -1.8346 -1.5366 19 1 0.1586 -1.4763 -1.7818 20 6 1.0810 -2.7860 -0.3409 21 1 -0.3634 -1.0219 0.1086 22 1 -0.3633 0.6050 0.8307 23 1 -0.3633 0.4170 -0.9392 24 1 1.7192 -1.7626 1.2241 25 1 1.6355 -0.2378 2.1385 26 1 6.0261 -1.4761 3.1602 27 1 1.1403 0.6160 -2.5891 28 1 2.7812 1.0646 -2.0647 29 1 2.7711 0.1719 -4.3909 30 1 3.7158 -0.8639 -3.2940 31 1 0.9436 -1.3370 -4.1783 32 1 1.0928 -3.4050 -3.0107 33 1 2.7340 -2.9568 -2.4868 34 1 0.4817 -2.3308 0.4475 35 1 0.6204 -3.7237 -0.6519 36 1 2.0859 -2.9815 0.0335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:16 Heat of formation + Delta-G solvation = -2.724723 kcal Electronic energy + Delta-G solvation = -15414.242303 eV Core-core repulsion = 13125.811225 eV Total energy + Delta-G solvation = -2288.431078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90314 -36.94580 -34.58453 -33.39185 -31.97351 -29.63409 -28.38323 -25.63888 -24.49008 -23.10750 -21.75049 -20.39685 -18.76217 -17.16193 -16.67096 -16.41712 -16.04142 -15.49535 -15.02146 -14.78529 -14.31982 -14.20644 -13.87180 -13.41416 -13.18436 -13.03889 -12.89122 -12.71529 -12.31611 -12.09419 -11.89093 -11.80685 -11.65793 -11.47988 -11.38039 -10.91739 -10.53076 -9.38839 -8.83926 -8.15118 -6.12016 1.36416 1.38354 1.48756 2.43028 2.99272 3.22340 3.39014 3.98367 4.06011 4.13965 4.23769 4.29303 4.40927 4.43096 4.51639 4.63006 4.65790 4.81510 4.88512 4.91919 5.00272 5.09113 5.10572 5.18937 5.24675 5.31859 5.47265 5.68723 5.80290 5.96109 6.35016 6.48415 6.53172 6.58027 6.95300 7.47121 9.02754 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035708 B = 0.010292 C = 0.009796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.946462 B = 2719.783043 C = 2857.711012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H 0.047 0.953 4 C -0.025 4.025 5 C -0.480 4.480 6 H 0.030 0.970 7 C -0.007 4.007 8 N -0.962 5.962 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.246 1.246 13 N -0.533 5.533 14 C 0.022 3.978 15 C 0.066 3.934 16 N -0.683 5.683 17 C 0.067 3.933 18 C 0.052 3.948 19 H 0.052 0.948 20 C -0.152 4.152 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.011 0.989 26 H 0.259 0.741 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.347 0.653 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 -1.024 -9.281 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.010 4.010 3 H 0.066 0.934 4 C -0.062 4.062 5 C -0.519 4.519 6 H 0.048 0.952 7 C -0.201 4.201 8 N -0.605 5.605 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.170 1.170 13 N -0.258 5.258 14 C -0.108 4.108 15 C -0.064 4.064 16 N -0.311 5.311 17 C -0.063 4.063 18 C -0.058 4.058 19 H 0.070 0.930 20 C -0.209 4.209 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.423 -1.607 -9.423 15.675 hybrid contribution -0.775 0.763 1.449 1.812 sum -13.198 -0.844 -7.973 15.443 Atomic orbital electron populations 1.22534 0.96207 1.03019 1.01732 1.21469 0.92550 0.96171 0.90764 0.93413 1.20181 0.94508 0.98184 0.93306 1.21273 0.91935 1.35870 1.02772 0.95207 1.25939 0.95485 0.97237 1.01399 1.70095 1.08421 1.49888 1.32143 0.85800 0.79687 0.79473 0.78508 1.19425 1.21825 1.17005 1.62157 1.51222 1.09092 1.03346 1.22814 0.99540 0.95745 0.92660 1.22021 0.96864 0.92045 0.95486 1.60753 1.18122 1.17210 1.35020 1.22135 1.01226 0.95311 0.87610 1.22346 0.94440 0.92096 0.96882 0.93022 1.22245 1.01795 0.99108 0.97738 0.90832 0.92065 0.92413 0.93113 0.97097 0.93243 0.94276 0.92168 0.88267 0.92635 0.83539 0.88304 0.92704 0.91533 0.90594 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.20 7.86 71.98 0.57 -4.63 16 2 C 0.10 3.82 2.22 44.91 0.10 3.92 16 3 H 0.05 1.99 7.72 -2.38 -0.02 1.97 16 4 C -0.02 -1.14 3.17 29.85 0.09 -1.05 16 5 C -0.48 -27.99 9.35 25.60 0.24 -27.75 16 6 H 0.03 1.96 7.94 -2.91 -0.02 1.94 16 7 C -0.01 -0.39 5.47 84.65 0.46 0.07 16 8 N -0.96 -62.53 13.96 21.45 0.30 -62.23 16 9 Si 0.94 45.38 27.55 68.60 1.89 47.27 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.25 -10.92 6.42 99.48 0.64 -10.28 16 13 N -0.53 -19.54 4.06 -845.40 -3.44 -22.97 16 14 C 0.02 0.68 5.44 86.31 0.47 1.15 16 15 C 0.07 1.82 6.72 86.31 0.58 2.40 16 16 N -0.68 -17.10 6.91 -513.46 -3.55 -20.65 16 17 C 0.07 1.85 5.98 86.31 0.52 2.36 16 18 C 0.05 1.56 1.94 44.92 0.09 1.65 16 19 H 0.05 1.37 6.50 -2.39 -0.02 1.35 16 20 C -0.15 -4.79 7.20 71.98 0.52 -4.27 16 21 H 0.07 2.04 4.71 -2.39 -0.01 2.03 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 1.49 7.28 -2.39 -0.02 1.47 16 24 H 0.05 2.26 3.30 -2.39 -0.01 2.26 16 25 H 0.01 0.51 6.91 -2.38 -0.02 0.49 16 26 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 27 H 0.04 1.05 7.56 -2.39 -0.02 1.03 16 28 H 0.06 2.04 7.98 -2.39 -0.02 2.02 16 29 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.35 7.04 8.89 -89.69 -0.80 6.24 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.10 4.14 -2.39 -0.01 2.09 16 35 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.04 1.77 7.19 -2.39 -0.02 1.75 16 Total: -1.00 -67.90 265.69 -0.97 -68.87 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.19 Total: 15.87 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.63 Total: -26.15 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -6.69 Total: -105.85 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.89 Total: 47.27 kcal Total: -67.90 -0.97 -68.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.143 kcal (2) G-P(sol) polarization free energy of solvation -67.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds