Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47315 * 2 1 4 4 C 1.53009 * 109.46830 * 239.99889 * 2 1 3 5 5 C 1.50697 * 109.46898 * 169.11119 * 4 2 1 6 6 H 1.08003 * 119.99942 * 354.13086 * 5 4 2 7 7 C 1.37876 * 119.99911 * 174.12556 * 5 4 2 8 8 N 1.31513 * 120.00193 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99986 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46948 * 60.00501 * 9 7 5 11 11 H 1.48499 * 109.47060 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47395 * 300.00284 * 9 7 5 13 13 N 1.46901 * 109.47032 * 120.00098 * 2 1 3 14 14 C 1.46955 * 110.99779 * 70.93319 * 13 2 1 15 15 C 1.53058 * 109.36306 * 183.18787 * 14 13 2 16 16 N 1.46952 * 109.36419 * 301.59669 * 15 14 13 17 17 C 1.46968 * 110.88115 * 59.31860 * 16 15 14 18 18 C 1.46952 * 110.99673 * 194.72754 * 13 2 1 19 19 H 1.08999 * 109.49584 * 296.80093 * 18 13 2 20 20 C 1.53005 * 109.48872 * 56.84941 * 18 13 2 21 21 H 1.09002 * 109.46804 * 54.01706 * 1 2 3 22 22 H 1.09003 * 109.47189 * 174.01899 * 1 2 3 23 23 H 1.09000 * 109.46718 * 294.01896 * 1 2 3 24 24 H 1.08991 * 109.47053 * 289.11052 * 4 2 1 25 25 H 1.08998 * 109.46536 * 49.11455 * 4 2 1 26 26 H 0.96999 * 120.00079 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.49260 * 303.14957 * 14 13 2 28 28 H 1.09002 * 109.49502 * 63.21937 * 14 13 2 29 29 H 1.08996 * 109.49037 * 181.62841 * 15 14 13 30 30 H 1.08996 * 109.50630 * 61.57244 * 15 14 13 31 31 H 1.00901 * 111.00461 * 295.45845 * 16 15 14 32 32 H 1.08999 * 109.48903 * 180.71582 * 17 16 15 33 33 H 1.08998 * 109.50402 * 60.65819 * 17 16 15 34 34 H 1.08991 * 109.47069 * 53.04931 * 20 18 13 35 35 H 1.09003 * 109.47289 * 173.05008 * 20 18 13 36 36 H 1.09002 * 109.46547 * 293.04357 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5229 -0.4932 -1.3909 6 1 4.0319 0.1820 -0.7190 7 6 4.2297 -1.1464 -2.3782 8 7 3.6097 -1.9681 -3.1967 9 14 6.0676 -0.8630 -2.5542 10 1 6.7525 -1.2626 -1.2986 11 1 6.5882 -1.6769 -3.6819 12 1 6.3235 0.5752 -2.8215 13 7 2.0197 -0.6925 1.1994 14 6 1.7727 -2.1384 1.1104 15 6 2.2236 -2.8112 2.4091 16 7 3.6501 -2.5362 2.6305 17 6 3.8972 -1.0902 2.7195 18 6 3.4462 -0.4176 1.4207 19 1 4.0263 -0.8116 0.5863 20 6 3.6645 1.0932 1.5260 21 1 -0.3633 0.6038 -0.8316 22 1 -0.3634 -1.0221 -0.1071 23 1 -0.3633 0.4183 0.9387 24 1 1.8439 -1.7895 -1.1576 25 1 1.5269 -0.3318 -2.1285 26 1 4.1069 -2.4274 -3.8915 27 1 0.7081 -2.3169 0.9591 28 1 2.3338 -2.5524 0.2726 29 1 2.0680 -3.8874 2.3342 30 1 1.6435 -2.4172 3.2436 31 1 4.2157 -2.9558 1.9079 32 1 4.9618 -0.9119 2.8708 33 1 3.3363 -0.6760 3.5573 34 1 2.9932 1.5057 2.2790 35 1 4.6974 1.2920 1.8120 36 1 3.4587 1.5580 0.5618 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784729.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = 4.502720 kcal Electronic energy + Delta-G solvation = -15594.144819 eV Core-core repulsion = 13306.027146 eV Total energy + Delta-G solvation = -2288.117673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.20371 -35.16229 -32.55993 -32.20026 -29.85557 -27.49815 -26.59180 -24.38120 -23.02298 -21.50086 -20.23864 -18.46965 -16.50423 -15.71848 -15.05754 -14.47955 -14.37008 -14.10302 -13.59363 -12.89675 -12.62944 -12.06939 -11.87822 -11.62817 -11.57021 -11.37737 -11.23709 -11.01600 -10.81864 -10.74196 -10.58028 -10.19164 -10.08885 -9.81291 -9.48104 -9.00501 -8.42681 -7.93505 -7.16394 -6.08798 -4.08840 3.24816 3.30884 3.32490 4.36831 4.62902 4.83429 5.25616 5.56856 5.65348 5.73986 5.75061 5.96391 5.99001 6.08094 6.17679 6.19703 6.25182 6.32666 6.37106 6.44512 6.63072 6.71510 6.75309 6.84896 6.93816 7.17076 7.40787 7.50087 7.60714 7.78550 7.85529 8.03173 8.09357 8.33197 8.95374 9.52172 11.01939 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.013195 C = 0.011464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.328601 B = 2121.572293 C = 2441.886491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.072 3.928 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.524 4.524 6 H 0.068 0.932 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.517 5.517 14 C 0.012 3.988 15 C 0.062 3.938 16 N -0.690 5.690 17 C 0.065 3.935 18 C 0.020 3.980 19 H 0.097 0.903 20 C -0.139 4.139 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.028 0.972 25 H 0.012 0.988 26 H 0.261 0.739 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.339 0.661 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 1.339 8.544 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.562 4.562 6 H 0.086 0.914 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.242 5.242 14 C -0.118 4.118 15 C -0.069 4.069 16 N -0.318 5.318 17 C -0.065 4.065 18 C -0.090 4.090 19 H 0.114 0.886 20 C -0.197 4.197 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.868 1.300 9.503 9.771 hybrid contribution 1.305 0.081 -2.011 2.398 sum -0.563 1.381 7.492 7.639 Atomic orbital electron populations 1.21797 0.96681 1.00778 1.00170 1.21863 0.93044 0.98478 0.90195 0.90957 1.19781 0.95957 0.96592 0.92286 1.21423 0.93621 1.26145 1.15021 0.91377 1.25021 0.98109 0.95328 0.95781 1.69954 1.35935 1.28527 1.18583 0.86781 0.85906 0.78348 0.77801 1.20122 1.21301 1.20191 1.62551 1.16058 1.07959 1.37601 1.22812 1.01150 0.89932 0.97896 1.22045 0.88958 0.99034 0.96819 1.60868 1.06853 1.12260 1.51809 1.22128 0.99935 0.87224 0.97230 1.22833 0.90908 0.96208 0.99050 0.88560 1.21783 1.00047 0.95928 1.01897 0.93246 0.93591 0.93444 0.95373 0.97012 0.92955 0.91524 0.92548 0.91349 0.91169 0.84428 0.91465 0.91419 0.93119 0.93349 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.07 37.16 0.34 -2.10 16 2 C 0.07 1.48 2.34 -67.70 -0.16 1.32 16 3 H 0.07 1.51 5.64 -51.93 -0.29 1.22 16 4 C -0.01 -0.20 4.08 -27.88 -0.11 -0.32 16 5 C -0.52 -13.78 6.89 -34.44 -0.24 -14.02 16 6 H 0.07 1.72 4.23 -52.48 -0.22 1.50 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.52 -9.85 4.44 -218.55 -0.97 -10.82 16 14 C 0.01 0.22 4.65 -3.76 -0.02 0.20 16 15 C 0.06 0.99 6.72 -3.77 -0.03 0.96 16 16 N -0.69 -11.38 6.91 -113.63 -0.79 -12.17 16 17 C 0.06 1.07 6.00 -3.76 -0.02 1.05 16 18 C 0.02 0.37 1.91 -67.65 -0.13 0.24 16 19 H 0.10 2.15 4.75 -51.93 -0.25 1.91 16 20 C -0.14 -2.38 8.14 37.16 0.30 -2.08 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.81 6.92 -51.93 -0.36 0.45 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.75 5.72 -51.93 -0.30 0.45 16 25 H 0.01 0.31 8.10 -51.93 -0.42 -0.11 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.07 1.20 6.67 -51.93 -0.35 0.85 16 28 H 0.06 1.24 6.17 -51.93 -0.32 0.92 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.34 5.74 8.89 -39.29 -0.35 5.39 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.19 5.44 -51.93 -0.28 0.91 16 LS Contribution 266.73 15.07 4.02 4.02 Total: -1.00 -27.72 266.73 -7.84 -35.55 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.65 Total: 5.89 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.16 Total: -13.21 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -1.02 Total: -48.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.72 -7.84 -35.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784729.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.055 kcal (2) G-P(sol) polarization free energy of solvation -27.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds