Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47315 * 2 1 4 4 C 1.53009 * 109.46830 * 239.99889 * 2 1 3 5 5 C 1.50697 * 109.46898 * 169.11119 * 4 2 1 6 6 H 1.08003 * 119.99942 * 354.13086 * 5 4 2 7 7 C 1.37876 * 119.99911 * 174.12556 * 5 4 2 8 8 N 1.31513 * 120.00193 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99986 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46948 * 60.00501 * 9 7 5 11 11 H 1.48499 * 109.47060 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47395 * 300.00284 * 9 7 5 13 13 N 1.46901 * 109.47032 * 120.00098 * 2 1 3 14 14 C 1.46955 * 110.99779 * 70.93319 * 13 2 1 15 15 C 1.53058 * 109.36306 * 183.18787 * 14 13 2 16 16 N 1.46952 * 109.36419 * 301.59669 * 15 14 13 17 17 C 1.46968 * 110.88115 * 59.31860 * 16 15 14 18 18 C 1.46952 * 110.99673 * 194.72754 * 13 2 1 19 19 H 1.08999 * 109.49584 * 296.80093 * 18 13 2 20 20 C 1.53005 * 109.48872 * 56.84941 * 18 13 2 21 21 H 1.09002 * 109.46804 * 54.01706 * 1 2 3 22 22 H 1.09003 * 109.47189 * 174.01899 * 1 2 3 23 23 H 1.09000 * 109.46718 * 294.01896 * 1 2 3 24 24 H 1.08991 * 109.47053 * 289.11052 * 4 2 1 25 25 H 1.08998 * 109.46536 * 49.11455 * 4 2 1 26 26 H 0.96999 * 120.00079 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.49260 * 303.14957 * 14 13 2 28 28 H 1.09002 * 109.49502 * 63.21937 * 14 13 2 29 29 H 1.08996 * 109.49037 * 181.62841 * 15 14 13 30 30 H 1.08996 * 109.50630 * 61.57244 * 15 14 13 31 31 H 1.00901 * 111.00461 * 295.45845 * 16 15 14 32 32 H 1.08999 * 109.48903 * 180.71582 * 17 16 15 33 33 H 1.08998 * 109.50402 * 60.65819 * 17 16 15 34 34 H 1.08991 * 109.47069 * 53.04931 * 20 18 13 35 35 H 1.09003 * 109.47289 * 173.05008 * 20 18 13 36 36 H 1.09002 * 109.46547 * 293.04357 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5229 -0.4932 -1.3909 6 1 4.0319 0.1820 -0.7190 7 6 4.2297 -1.1464 -2.3782 8 7 3.6097 -1.9681 -3.1967 9 14 6.0676 -0.8630 -2.5542 10 1 6.7525 -1.2626 -1.2986 11 1 6.5882 -1.6769 -3.6819 12 1 6.3235 0.5752 -2.8215 13 7 2.0197 -0.6925 1.1994 14 6 1.7727 -2.1384 1.1104 15 6 2.2236 -2.8112 2.4091 16 7 3.6501 -2.5362 2.6305 17 6 3.8972 -1.0902 2.7195 18 6 3.4462 -0.4176 1.4207 19 1 4.0263 -0.8116 0.5863 20 6 3.6645 1.0932 1.5260 21 1 -0.3633 0.6038 -0.8316 22 1 -0.3634 -1.0221 -0.1071 23 1 -0.3633 0.4183 0.9387 24 1 1.8439 -1.7895 -1.1576 25 1 1.5269 -0.3318 -2.1285 26 1 4.1069 -2.4274 -3.8915 27 1 0.7081 -2.3169 0.9591 28 1 2.3338 -2.5524 0.2726 29 1 2.0680 -3.8874 2.3342 30 1 1.6435 -2.4172 3.2436 31 1 4.2157 -2.9558 1.9079 32 1 4.9618 -0.9119 2.8708 33 1 3.3363 -0.6760 3.5573 34 1 2.9932 1.5057 2.2790 35 1 4.6974 1.2920 1.8120 36 1 3.4587 1.5580 0.5618 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784729.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = -15.564155 kcal Electronic energy + Delta-G solvation = -15595.014984 eV Core-core repulsion = 13306.027146 eV Total energy + Delta-G solvation = -2288.987838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73309 -36.72067 -34.57394 -33.63943 -31.42396 -29.41319 -27.98201 -25.84311 -24.96928 -22.91647 -21.77526 -20.09296 -18.53019 -17.20400 -16.75522 -16.18174 -15.95836 -15.56019 -15.10413 -14.61852 -14.18219 -13.85150 -13.45274 -13.32011 -13.08647 -12.91302 -12.70110 -12.56610 -12.46932 -12.42479 -12.20964 -11.73774 -11.71720 -11.57979 -11.18401 -10.93244 -10.53342 -9.33765 -8.81808 -8.19990 -6.25015 1.35795 1.36489 1.43790 2.37012 3.07155 3.19314 3.48783 4.11258 4.21154 4.32244 4.36567 4.52088 4.58055 4.65397 4.68185 4.77276 4.81897 4.90090 4.97366 5.02767 5.13237 5.17412 5.23026 5.29256 5.33418 5.48725 5.59719 5.66376 5.81681 6.08032 6.22695 6.36373 6.44623 6.47992 6.87376 7.39341 8.91392 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.013195 C = 0.011464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.328601 B = 2121.572293 C = 2441.886491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.078 3.922 3 H 0.071 0.929 4 C -0.001 4.001 5 C -0.523 4.523 6 H 0.079 0.921 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.947 3.053 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.506 5.506 14 C 0.017 3.983 15 C 0.069 3.931 16 N -0.688 5.688 17 C 0.071 3.929 18 C 0.017 3.983 19 H 0.058 0.942 20 C -0.133 4.133 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.004 0.996 25 H -0.021 1.021 26 H 0.259 0.741 27 H 0.071 0.929 28 H 0.014 0.986 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.335 0.665 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 2.059 10.610 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.031 4.031 3 H 0.089 0.911 4 C -0.039 4.039 5 C -0.560 4.560 6 H 0.097 0.903 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.773 3.227 10 H -0.189 1.189 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.231 5.231 14 C -0.113 4.113 15 C -0.061 4.061 16 N -0.315 5.315 17 C -0.059 4.059 18 C -0.093 4.093 19 H 0.076 0.924 20 C -0.191 4.191 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.022 0.978 25 H -0.002 1.002 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.033 0.967 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.338 2.033 11.593 11.846 hybrid contribution 1.102 -0.147 -2.642 2.866 sum -0.236 1.885 8.951 9.151 Atomic orbital electron populations 1.21721 0.94488 1.00946 1.01541 1.21754 0.94864 0.97761 0.88698 0.91140 1.19694 0.95449 0.95468 0.93268 1.21803 0.94415 1.25351 1.14476 0.90349 1.25847 1.02612 0.95300 0.95711 1.70100 1.37645 1.30095 1.19573 0.85760 0.80672 0.78353 0.77941 1.18859 1.21587 1.19433 1.62670 1.16402 1.08040 1.35938 1.22790 1.00866 0.89627 0.98006 1.22057 0.88772 0.99832 0.95429 1.60911 1.06928 1.12293 1.51363 1.22126 1.00955 0.86827 0.95969 1.22823 0.89917 0.97519 0.99020 0.92398 1.21727 1.01668 0.94420 1.01266 0.92823 0.93880 0.91246 0.97792 1.00242 0.93218 0.91061 0.96740 0.89756 0.89868 0.84909 0.90055 0.90262 0.91564 0.91492 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.07 71.98 0.65 -3.82 16 2 C 0.08 3.16 2.34 44.92 0.11 3.26 16 3 H 0.07 2.91 5.64 -2.39 -0.01 2.89 16 4 C 0.00 -0.03 4.08 29.85 0.12 0.09 16 5 C -0.52 -27.98 6.89 25.60 0.18 -27.80 16 6 H 0.08 3.97 4.23 -2.91 -0.01 3.96 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 9 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 N -0.51 -18.68 4.44 -845.37 -3.75 -22.44 16 14 C 0.02 0.63 4.65 86.31 0.40 1.03 16 15 C 0.07 2.07 6.72 86.31 0.58 2.65 16 16 N -0.69 -21.21 6.91 -513.41 -3.55 -24.76 16 17 C 0.07 2.16 6.00 86.31 0.52 2.67 16 18 C 0.02 0.61 1.91 44.93 0.09 0.70 16 19 H 0.06 2.57 4.75 -2.39 -0.01 2.56 16 20 C -0.13 -4.26 8.14 71.98 0.59 -3.67 16 21 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 22 H 0.04 1.49 6.92 -2.39 -0.02 1.48 16 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.00 0.22 5.72 -2.39 -0.01 0.20 16 25 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.07 2.51 6.67 -2.39 -0.02 2.50 16 28 H 0.01 0.65 6.17 -2.39 -0.01 0.64 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.33 10.93 8.89 -89.69 -0.80 10.13 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.55 5.44 -2.39 -0.01 1.54 16 Total: -1.00 -60.05 266.73 -1.03 -61.08 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.27 Total: 20.78 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.69 Total: -24.27 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -7.02 Total: -103.08 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -60.05 -1.03 -61.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784729.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.516 kcal (2) G-P(sol) polarization free energy of solvation -60.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds