Wall clock time and date at job start Mon Mar 30 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46934 * 2 1 4 4 C 1.52997 * 109.47241 * 240.00497 * 2 1 3 5 5 C 1.50696 * 109.47606 * 64.44399 * 4 2 1 6 6 H 1.08008 * 119.99876 * 5.07422 * 5 4 2 7 7 C 1.37873 * 120.00486 * 185.07376 * 5 4 2 8 8 N 1.31513 * 119.99731 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00269 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47289 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46900 * 120.00033 * 9 7 5 12 12 H 1.48500 * 109.47159 * 239.99866 * 9 7 5 13 13 N 1.46898 * 109.47594 * 119.99734 * 2 1 3 14 14 C 1.46850 * 110.99520 * 60.85026 * 13 2 1 15 15 C 1.53042 * 109.52094 * 185.84289 * 14 13 2 16 16 C 1.53113 * 109.27394 * 300.81645 * 15 14 13 17 17 C 1.53124 * 109.16360 * 57.65696 * 16 15 14 18 18 H 1.09001 * 109.49723 * 62.28604 * 17 16 15 19 19 N 1.46902 * 109.53697 * 182.37989 * 17 16 15 20 20 C 1.46845 * 111.00260 * 185.05893 * 13 2 1 21 21 H 1.08997 * 109.47147 * 60.00369 * 1 2 3 22 22 H 1.09004 * 109.46496 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46952 * 299.99518 * 1 2 3 24 24 H 1.09004 * 109.47413 * 184.44551 * 4 2 1 25 25 H 1.09002 * 109.47083 * 304.44072 * 4 2 1 26 26 H 0.97004 * 120.00379 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46345 * 65.82604 * 14 13 2 28 28 H 1.09003 * 109.46023 * 305.85161 * 14 13 2 29 29 H 1.08996 * 109.50185 * 60.75932 * 15 14 13 30 30 H 1.08996 * 109.49869 * 180.87788 * 15 14 13 31 31 H 1.09008 * 109.52072 * 177.55984 * 16 15 14 32 32 H 1.09004 * 109.52756 * 297.75042 * 16 15 14 33 33 H 1.00902 * 110.99929 * 299.82329 * 19 17 16 34 34 H 1.00900 * 110.99830 * 63.78051 * 19 17 16 35 35 H 1.09006 * 109.46082 * 294.17908 * 20 13 2 36 36 H 1.08994 * 109.46560 * 54.15451 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6297 0.0500 -2.4772 6 1 1.1338 1.0041 -2.3751 7 6 1.8872 -0.4623 -3.7311 8 7 2.4905 -1.6243 -3.8555 9 14 1.3779 0.4933 -5.2532 10 1 0.7211 1.7610 -4.8451 11 1 2.5794 0.7996 -6.0704 12 1 0.4288 -0.3209 -6.0543 13 7 2.0198 -0.6924 1.1994 14 6 1.5656 -2.0887 1.2232 15 6 1.9693 -2.7352 2.5503 16 6 3.4917 -2.6715 2.7011 17 6 3.9437 -1.2105 2.6244 18 1 3.5046 -0.6500 3.4497 19 7 5.4086 -1.1443 2.7111 20 6 3.4827 -0.6082 1.2953 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 3.1272 -0.7906 -1.2104 25 1 1.6132 -1.7233 -1.2900 26 1 2.6714 -1.9850 -4.7376 27 1 2.0250 -2.6341 0.3989 28 1 0.4810 -2.1196 1.1193 29 1 1.4992 -2.1987 3.3744 30 1 1.6458 -3.7760 2.5612 31 1 3.7802 -3.0919 3.6646 32 1 3.9614 -3.2407 1.8989 33 1 5.7375 -1.5364 3.5807 34 1 5.8386 -1.6031 1.9220 35 1 3.9331 -1.1606 0.4705 36 1 3.7905 0.4361 1.2438 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695785198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:48 Heat of formation + Delta-G solvation = -37.027586 kcal Electronic energy + Delta-G solvation = -14937.344024 eV Core-core repulsion = 12647.425462 eV Total energy + Delta-G solvation = -2289.918562 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49952 -37.06485 -34.87601 -33.52758 -31.59503 -29.39122 -28.46757 -25.77104 -24.70791 -23.39230 -21.29248 -20.09897 -18.60693 -17.03272 -16.92550 -16.55654 -15.62406 -15.36723 -15.14547 -14.89258 -14.53928 -14.26337 -14.07681 -13.58941 -13.22975 -12.87520 -12.72783 -12.66500 -12.30148 -12.26350 -11.91997 -11.80138 -11.59000 -11.43444 -11.27985 -11.10534 -10.56852 -9.58943 -9.09263 -8.21209 -6.31794 1.37380 1.38002 1.51204 2.38581 2.97963 3.11458 3.70516 3.85762 3.96035 4.13082 4.20521 4.36667 4.46288 4.55120 4.60161 4.67591 4.79358 4.83226 4.98352 5.01164 5.10240 5.13057 5.14977 5.23023 5.40982 5.42000 5.49479 5.59969 5.74343 6.04415 6.17707 6.34028 6.37484 6.62578 6.84866 7.36748 8.90047 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040801 B = 0.007868 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.089489 B = 3557.786524 C = 3774.921813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.012 3.988 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.524 5.524 14 C 0.047 3.953 15 C -0.104 4.104 16 C -0.148 4.148 17 C 0.105 3.895 18 H 0.091 0.909 19 N -0.848 5.848 20 C 0.064 3.936 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.067 0.933 24 H -0.020 1.020 25 H -0.006 1.006 26 H 0.261 0.739 27 H 0.005 0.995 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.354 0.646 34 H 0.340 0.660 35 H 0.007 0.993 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 -1.333 13.072 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.022 4.022 3 H 0.080 0.920 4 C -0.027 4.027 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.247 5.247 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.187 4.187 17 C -0.007 4.007 18 H 0.109 0.891 19 N -0.378 5.378 20 C -0.064 4.064 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.086 0.914 24 H -0.002 1.002 25 H 0.012 0.988 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.025 0.975 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.006 -0.400 13.350 13.356 hybrid contribution 0.357 -1.305 -2.099 2.497 sum 0.351 -1.706 11.251 11.385 Atomic orbital electron populations 1.21633 0.93611 1.01218 1.01297 1.21666 0.96354 0.96791 0.87355 0.91969 1.19506 0.93893 0.95294 0.93966 1.21614 1.37811 1.05549 0.91826 0.91907 1.25964 0.95209 0.95958 1.02739 1.70115 1.43496 1.19824 1.24099 0.85431 0.78000 0.79016 0.78827 1.18363 1.20673 1.20412 1.62323 1.09871 1.14274 1.38275 1.22181 1.00496 0.88357 0.97067 1.21500 0.95660 1.00646 0.96464 1.22402 0.96832 0.97451 1.02034 1.21313 0.88041 0.94547 0.96801 0.89114 1.58789 1.05265 1.65357 1.08385 1.21952 0.87977 1.00338 0.96171 0.92794 0.93558 0.91375 1.00196 0.98807 0.92987 0.97672 0.90484 0.90028 0.90395 0.89502 0.93745 0.83114 0.84787 0.97495 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.80 71.98 0.63 -3.94 16 2 C 0.09 3.70 2.38 44.92 0.11 3.81 16 3 H 0.06 2.73 8.08 -2.38 -0.02 2.71 16 4 C 0.01 0.63 3.73 29.85 0.11 0.74 16 5 C -0.53 -30.22 8.30 25.60 0.21 -30.01 16 6 H 0.06 3.44 7.22 -2.91 -0.02 3.42 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 8 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 N -0.52 -19.27 4.64 -871.11 -4.04 -23.32 16 14 C 0.05 1.62 4.64 86.33 0.40 2.02 16 15 C -0.10 -2.66 6.09 30.65 0.19 -2.47 16 16 C -0.15 -3.56 5.58 30.67 0.17 -3.39 16 17 C 0.10 2.82 3.41 44.97 0.15 2.97 16 18 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 19 N -0.85 -20.03 9.26 -168.46 -1.56 -21.59 16 20 C 0.06 2.31 4.58 86.32 0.39 2.71 16 21 H 0.05 2.16 7.02 -2.39 -0.02 2.15 16 22 H 0.05 1.74 6.30 -2.39 -0.02 1.72 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H -0.02 -1.19 6.45 -2.38 -0.02 -1.21 16 25 H -0.01 -0.38 6.77 -2.39 -0.02 -0.39 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.00 0.21 6.72 -2.39 -0.02 0.19 16 28 H 0.08 2.60 6.03 -2.39 -0.01 2.59 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.35 6.32 9.04 -89.69 -0.81 5.51 16 34 H 0.34 8.18 8.98 -89.69 -0.81 7.37 16 35 H 0.01 0.29 6.63 -2.38 -0.02 0.27 16 36 H 0.06 2.40 8.07 -2.39 -0.02 2.38 16 Total: -1.00 -64.44 275.49 -1.01 -65.46 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.55 Total: 17.19 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 2.83 Total: -27.17 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -5.32 Total: -102.29 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.44 -1.01 -65.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.428 kcal (2) G-P(sol) polarization free energy of solvation -64.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds