Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47286 * 2 1 4 4 C 1.53000 * 109.47307 * 239.99904 * 2 1 3 5 5 C 1.50701 * 109.47560 * 174.75319 * 4 2 1 6 6 H 1.08000 * 119.99543 * 355.53196 * 5 4 2 7 7 C 1.37872 * 120.00281 * 175.52250 * 5 4 2 8 8 N 1.31516 * 120.00013 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99987 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47267 * 60.00284 * 9 7 5 11 11 H 1.48504 * 109.47152 * 300.00582 * 9 7 5 12 12 H 1.48499 * 109.47212 * 180.02562 * 9 7 5 13 13 N 1.46898 * 109.47416 * 120.00351 * 2 1 3 14 14 C 1.48558 * 110.99843 * 284.99733 * 13 2 1 15 15 C 1.54378 * 104.59762 * 159.03764 * 14 13 2 16 16 C 1.54258 * 105.06115 * 336.14719 * 15 14 13 17 17 H 1.08997 * 110.32580 * 118.99497 * 16 15 14 18 18 N 1.46901 * 110.32566 * 241.10284 * 16 15 14 19 19 C 1.48565 * 111.00292 * 40.41219 * 13 2 1 20 20 H 1.09000 * 110.40787 * 319.74345 * 19 13 2 21 21 C 1.52999 * 110.40717 * 82.18102 * 19 13 2 22 22 H 1.08996 * 109.46984 * 291.04886 * 1 2 3 23 23 H 1.08995 * 109.46835 * 51.05576 * 1 2 3 24 24 H 1.09000 * 109.46927 * 171.05377 * 1 2 3 25 25 H 1.09007 * 109.47086 * 54.75972 * 4 2 1 26 26 H 1.09003 * 109.47387 * 294.75792 * 4 2 1 27 27 H 0.96998 * 119.99946 * 359.97438 * 8 7 5 28 28 H 1.09001 * 110.41290 * 277.82026 * 14 13 2 29 29 H 1.09005 * 110.41130 * 40.25849 * 14 13 2 30 30 H 1.09003 * 110.32608 * 95.04392 * 15 14 13 31 31 H 1.09001 * 110.32861 * 217.25167 * 15 14 13 32 32 H 1.00893 * 111.00021 * 298.54696 * 18 16 15 33 33 H 1.00903 * 110.99793 * 62.49889 * 18 16 15 34 34 H 1.08999 * 109.46840 * 41.42990 * 21 19 13 35 35 H 1.09003 * 109.46496 * 161.42662 * 21 19 13 36 36 H 1.08990 * 109.47314 * 281.42694 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5415 -0.6098 -1.3160 6 1 4.0719 -0.0174 -0.5851 7 6 4.2379 -1.2641 -2.3098 8 7 3.5919 -1.9851 -3.2000 9 14 6.0990 -1.1264 -2.3921 10 1 6.6902 -1.6510 -1.1349 11 1 6.4829 0.2979 -2.5629 12 1 6.6033 -1.9162 -3.5440 13 7 2.0197 -0.6925 1.1994 14 6 1.8588 0.1568 2.4075 15 6 1.8861 -0.8372 3.5884 16 6 1.4538 -2.1892 2.9844 17 1 2.2482 -2.9266 3.0994 18 7 0.2210 -2.6642 3.6268 19 6 1.2016 -1.8983 1.4894 20 1 0.1456 -1.6920 1.3151 21 6 1.6653 -3.0767 0.6307 22 1 -0.3633 0.3691 0.9591 23 1 -0.3633 0.6459 -0.7993 24 1 -0.3633 -1.0152 -0.1598 25 1 1.6021 -0.2645 -2.1368 26 1 1.7554 -1.7725 -1.2035 27 1 2.6255 -2.0569 -3.1571 28 1 2.6839 0.8646 2.4873 29 1 0.9056 0.6847 2.3769 30 1 2.8935 -0.9106 3.9984 31 1 1.1836 -0.5261 4.3616 32 1 0.3621 -2.8124 4.6147 33 1 -0.5419 -2.0246 3.4624 34 1 2.7544 -3.0914 0.5917 35 1 1.3047 -4.0082 1.0672 36 1 1.2669 -2.9701 -0.3781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695785244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -21.123636 kcal Electronic energy + Delta-G solvation = -15266.293261 eV Core-core repulsion = 12977.064345 eV Total energy + Delta-G solvation = -2289.228915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85289 -36.71750 -34.81577 -32.73647 -32.01386 -29.12955 -28.53546 -25.63514 -25.12628 -22.70269 -21.65011 -20.19386 -18.78034 -17.30910 -16.86499 -15.97108 -15.65056 -15.38797 -15.18795 -14.78559 -14.67340 -14.02027 -13.61138 -13.41323 -13.13427 -12.95453 -12.76326 -12.57074 -12.45453 -12.37274 -11.96251 -11.95005 -11.70033 -11.35844 -11.07859 -10.55872 -10.36869 -9.58804 -9.09349 -8.52075 -6.15847 1.52886 1.61890 1.80410 2.63263 3.06307 3.32027 3.61031 3.65286 3.93017 4.07762 4.12481 4.27313 4.31340 4.40098 4.50753 4.55770 4.70470 4.77937 4.83978 4.90113 4.99449 5.03338 5.10622 5.20400 5.23240 5.30519 5.40643 5.68366 6.07030 6.15606 6.34437 6.35369 6.39551 6.64566 6.78838 7.59366 8.88878 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035984 B = 0.009380 C = 0.009064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.945076 B = 2984.292992 C = 3088.378992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.055 0.945 4 C 0.009 3.991 5 C -0.569 4.569 6 H 0.041 0.959 7 C -0.045 4.045 8 N -0.948 5.948 9 Si 1.111 2.889 10 H -0.275 1.275 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.504 5.504 14 C 0.027 3.973 15 C -0.146 4.146 16 C 0.098 3.902 17 H 0.078 0.922 18 N -0.839 5.839 19 C 0.065 3.935 20 H 0.065 0.935 21 C -0.123 4.123 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.054 0.946 25 H -0.023 1.023 26 H 0.021 0.979 27 H 0.252 0.748 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.354 0.646 33 H 0.344 0.656 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 2.286 14.735 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 H 0.073 0.927 4 C -0.028 4.028 5 C -0.608 4.608 6 H 0.060 0.940 7 C -0.241 4.241 8 N -0.588 5.588 9 Si 0.934 3.066 10 H -0.201 1.201 11 H -0.199 1.199 12 H -0.213 1.213 13 N -0.229 5.229 14 C -0.101 4.101 15 C -0.186 4.186 16 C -0.015 4.015 17 H 0.096 0.904 18 N -0.371 5.371 19 C -0.044 4.044 20 H 0.083 0.917 21 C -0.180 4.180 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.072 0.928 25 H -0.005 1.005 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.437 1.044 13.308 14.067 hybrid contribution -2.054 1.625 0.934 2.781 sum -6.491 2.669 14.242 15.877 Atomic orbital electron populations 1.22372 0.96868 1.01718 1.02052 1.21566 0.92239 0.96712 0.91410 0.92664 1.19455 0.95821 0.95938 0.91555 1.22190 0.93290 1.31787 1.13516 0.94043 1.27131 1.10566 0.93463 0.92942 1.70920 1.09591 1.41053 1.37241 0.82996 0.70339 0.76905 0.76332 1.20088 1.19862 1.21260 1.65505 1.50573 1.05206 1.01579 1.23129 1.00289 0.96305 0.90404 1.23103 1.02966 0.95460 0.97040 1.22050 0.92537 0.94803 0.92077 0.90384 1.58762 1.05905 1.53910 1.18477 1.22676 0.96132 0.91073 0.94510 0.91706 1.21702 1.00607 0.97344 0.98374 0.91232 0.92336 0.92753 1.00495 0.96130 0.93888 0.91260 0.93295 0.90944 0.89215 0.83175 0.84233 0.94413 0.91545 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.73 7.82 71.98 0.56 -5.17 16 2 C 0.09 3.73 2.24 44.92 0.10 3.83 16 3 H 0.06 2.38 8.02 -2.39 -0.02 2.36 16 4 C 0.01 0.48 3.66 29.85 0.11 0.59 16 5 C -0.57 -33.25 8.84 25.60 0.23 -33.03 16 6 H 0.04 2.43 7.75 -2.91 -0.02 2.41 16 7 C -0.05 -2.72 5.46 84.65 0.46 -2.26 16 8 N -0.95 -60.58 13.65 21.45 0.29 -60.28 16 9 Si 1.11 53.12 29.90 68.60 2.05 55.17 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 N -0.50 -19.15 4.76 -831.73 -3.96 -23.11 16 14 C 0.03 0.78 6.29 86.45 0.54 1.33 16 15 C -0.15 -3.40 6.77 31.49 0.21 -3.19 16 16 C 0.10 2.58 3.72 45.81 0.17 2.75 16 17 H 0.08 2.26 7.86 -2.39 -0.02 2.24 16 18 N -0.84 -17.13 9.21 -164.98 -1.52 -18.65 16 19 C 0.06 2.17 2.15 45.06 0.10 2.26 16 20 H 0.07 2.08 5.01 -2.39 -0.01 2.07 16 21 C -0.12 -4.84 8.33 71.98 0.60 -4.24 16 22 H 0.07 1.93 6.54 -2.39 -0.02 1.91 16 23 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.85 6.59 -2.39 -0.02 1.83 16 25 H -0.02 -1.31 8.13 -2.38 -0.02 -1.33 16 26 H 0.02 1.13 4.14 -2.39 -0.01 1.12 16 27 H 0.25 16.26 7.20 -92.71 -0.67 15.59 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.29 6.50 -2.38 -0.02 1.27 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.57 7.95 -2.39 -0.02 1.55 16 32 H 0.35 5.49 9.06 -89.70 -0.81 4.68 16 33 H 0.34 6.26 8.81 -89.69 -0.79 5.47 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 36 H 0.04 1.57 5.72 -2.39 -0.01 1.55 16 Total: -1.00 -67.36 274.06 -0.48 -67.84 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.43 Total: 16.15 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.08 Total: -37.11 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -5.19 Total: -102.04 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 2.05 Total: 55.17 kcal Total: -67.36 -0.48 -67.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.712 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds