Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.53002 * 109.46981 * 240.00097 * 2 1 3 5 5 C 1.50705 * 109.47049 * 175.74470 * 4 2 1 6 6 H 1.07998 * 119.99905 * 354.99569 * 5 4 2 7 7 C 1.37875 * 120.00003 * 174.99036 * 5 4 2 8 8 N 1.31511 * 119.99941 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47002 * 60.00098 * 9 7 5 11 11 H 1.48497 * 109.47245 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47197 * 300.00179 * 9 7 5 13 13 N 1.46900 * 109.47519 * 120.00246 * 2 1 3 14 14 C 1.48536 * 111.00103 * 60.45318 * 13 2 1 15 15 C 1.54941 * 103.22826 * 200.28546 * 14 13 2 16 16 C 1.54594 * 102.92185 * 37.41381 * 15 14 13 17 17 H 1.08999 * 110.30950 * 97.06258 * 16 15 14 18 18 N 1.46901 * 110.30749 * 219.12864 * 16 15 14 19 19 C 1.47906 * 111.00074 * 303.06082 * 13 2 1 20 20 H 1.09003 * 109.91513 * 26.48550 * 19 13 2 21 21 C 1.52998 * 109.91765 * 265.19834 * 19 13 2 22 22 H 1.09004 * 109.47429 * 186.02416 * 1 2 3 23 23 H 1.09005 * 109.47185 * 306.01476 * 1 2 3 24 24 H 1.08994 * 109.47506 * 66.01827 * 1 2 3 25 25 H 1.08998 * 109.47023 * 295.74333 * 4 2 1 26 26 H 1.08995 * 109.46879 * 55.74568 * 4 2 1 27 27 H 0.97001 * 120.00233 * 180.02562 * 8 7 5 28 28 H 1.09007 * 110.66370 * 318.71674 * 14 13 2 29 29 H 1.08996 * 110.66945 * 81.84524 * 14 13 2 30 30 H 1.08996 * 110.72127 * 155.77590 * 15 14 13 31 31 H 1.09003 * 110.71749 * 278.87440 * 15 14 13 32 32 H 1.00902 * 110.99790 * 298.55108 * 18 16 15 33 33 H 1.00898 * 111.00320 * 62.50071 * 18 16 15 34 34 H 1.08999 * 109.47599 * 59.99293 * 21 19 13 35 35 H 1.09003 * 109.47455 * 179.97438 * 21 19 13 36 36 H 1.09002 * 109.46860 * 299.99465 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5433 -0.6306 -1.3031 6 1 4.0754 -0.0430 -0.5697 7 6 4.2393 -1.2979 -2.2887 8 7 3.5912 -2.0131 -3.1820 9 14 6.1027 -1.1862 -2.3550 10 1 6.6756 -1.7144 -1.0909 11 1 6.6063 -1.9879 -3.4991 12 1 6.5077 0.2321 -2.5274 13 7 2.0197 -0.6925 1.1994 14 6 1.5525 -2.1022 1.2282 15 6 1.6881 -2.4902 2.7221 16 6 1.2738 -1.1936 3.4550 17 1 0.2262 -1.2450 3.7516 18 7 2.1261 -0.9787 4.6321 19 6 1.4862 -0.0658 2.4283 20 1 0.5366 0.4241 2.2131 21 6 2.4905 0.9521 2.9724 22 1 -0.3634 -1.0220 0.1079 23 1 -0.3634 0.6043 0.8313 24 1 -0.3634 0.4177 -0.9389 25 1 1.7402 -1.7685 -1.2120 26 1 1.6156 -0.2533 -2.1375 27 1 4.0808 -2.4829 -3.8751 28 1 0.5133 -2.1697 0.9061 29 1 2.1903 -2.7317 0.6078 30 1 1.0113 -3.3073 2.9713 31 1 2.7178 -2.7583 2.9589 32 1 2.0295 -1.7362 5.2916 33 1 3.0904 -0.8548 4.3625 34 1 2.6679 1.7238 2.2234 35 1 2.0902 1.4096 3.8772 36 1 3.4289 0.4484 3.2043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695785245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = 4.865680 kcal Electronic energy + Delta-G solvation = -15144.946622 eV Core-core repulsion = 12856.844688 eV Total energy + Delta-G solvation = -2288.101934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40027 -35.21545 -32.59792 -31.15386 -30.57680 -27.36270 -26.99888 -24.75765 -23.14264 -21.65104 -19.38253 -18.36742 -16.66226 -16.11669 -15.13708 -14.86426 -14.41234 -14.00199 -13.39230 -13.10356 -12.64552 -12.29248 -12.16078 -11.67749 -11.66047 -11.34442 -11.28440 -11.02171 -10.73289 -10.60836 -10.43055 -10.34349 -10.16073 -9.86611 -9.09351 -9.01476 -8.52198 -8.24999 -7.50332 -5.88121 -3.85988 3.41162 3.44626 3.48540 4.56026 4.59447 4.72744 4.98024 5.14122 5.37893 5.49232 5.53652 5.75379 5.84897 5.88913 5.93857 5.97719 6.02092 6.15149 6.24372 6.37784 6.39864 6.56866 6.69147 6.73696 6.78413 7.02630 7.26870 7.51768 7.56221 7.70889 7.85368 8.03097 8.13806 8.58654 9.19741 9.75567 11.23769 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033270 B = 0.009400 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.385526 B = 2977.861453 C = 3233.996045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.483 5.483 14 C 0.040 3.960 15 C -0.159 4.159 16 C 0.086 3.914 17 H 0.077 0.923 18 N -0.840 5.840 19 C 0.052 3.948 20 H 0.055 0.945 21 C -0.118 4.118 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.022 0.978 26 H 0.014 0.986 27 H 0.258 0.742 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.332 0.668 33 H 0.346 0.654 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 1.017 11.853 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.031 4.031 3 H 0.088 0.912 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.207 5.207 14 C -0.088 4.088 15 C -0.199 4.199 16 C -0.026 4.026 17 H 0.095 0.905 18 N -0.370 5.370 19 C -0.057 4.057 20 H 0.072 0.928 21 C -0.176 4.176 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.749 1.618 11.801 12.823 hybrid contribution 0.567 -1.014 -0.528 1.276 sum -4.181 0.604 11.274 12.039 Atomic orbital electron populations 1.22567 0.99985 1.01127 1.01013 1.22008 0.89980 0.98734 0.92351 0.91238 1.19194 0.96341 0.95521 0.89723 1.21129 0.91650 1.28773 1.11288 0.92253 1.25001 0.98027 0.95851 0.96001 1.69954 1.35266 1.32743 1.16574 0.86689 0.86389 0.77860 0.77191 1.20415 1.21685 1.20478 1.64959 1.54319 1.01005 1.00436 1.23125 0.98984 0.91760 0.94936 1.23350 1.01380 0.97853 0.97365 1.22277 0.96852 0.93574 0.89917 0.90500 1.59099 1.13310 1.49485 1.15124 1.22551 0.97420 0.94935 0.90794 0.92762 1.21478 0.98881 0.97764 0.99474 0.92790 0.93728 0.92424 0.95986 0.96770 0.93290 0.93950 0.89299 0.91970 0.91203 0.85580 0.83858 0.93408 0.92470 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 8.54 37.15 0.32 -2.98 16 2 C 0.08 1.61 2.43 -67.72 -0.16 1.44 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.03 0.75 4.28 -27.88 -0.12 0.63 16 5 C -0.49 -13.82 8.82 -34.44 -0.30 -14.12 16 6 H 0.06 1.68 7.75 -52.49 -0.41 1.27 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 N -0.48 -9.26 4.65 -214.67 -1.00 -10.26 16 14 C 0.04 0.72 5.23 -1.89 -0.01 0.71 16 15 C -0.16 -2.31 6.76 -24.87 -0.17 -2.47 16 16 C 0.09 1.18 4.12 -66.36 -0.27 0.91 16 17 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 18 N -0.84 -10.07 8.22 -3.52 -0.03 -10.10 16 19 C 0.05 0.83 2.84 -66.64 -0.19 0.64 16 20 H 0.05 0.87 5.41 -51.93 -0.28 0.58 16 21 C -0.12 -1.79 8.50 37.16 0.32 -1.47 16 22 H 0.05 0.93 5.84 -51.93 -0.30 0.63 16 23 H 0.04 0.69 6.14 -51.93 -0.32 0.37 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.02 0.59 6.71 -51.93 -0.35 0.25 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.04 0.75 5.63 -51.93 -0.29 0.45 16 29 H 0.09 1.87 7.56 -51.93 -0.39 1.48 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 32 H 0.33 3.34 9.06 -39.29 -0.36 2.99 16 33 H 0.35 4.29 6.99 -39.29 -0.27 4.01 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 36 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -29.54 274.81 -7.68 -37.22 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.82 Total: 3.77 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.69 Total: -15.35 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.29 Total: -46.99 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.54 -7.68 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.086 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds