Wall clock time and date at job start Mon Mar 30 2020 02:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.53002 * 109.46981 * 240.00097 * 2 1 3 5 5 C 1.50705 * 109.47049 * 175.74470 * 4 2 1 6 6 H 1.07998 * 119.99905 * 354.99569 * 5 4 2 7 7 C 1.37875 * 120.00003 * 174.99036 * 5 4 2 8 8 N 1.31511 * 119.99941 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47002 * 60.00098 * 9 7 5 11 11 H 1.48497 * 109.47245 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47197 * 300.00179 * 9 7 5 13 13 N 1.46900 * 109.47519 * 120.00246 * 2 1 3 14 14 C 1.48536 * 111.00103 * 60.45318 * 13 2 1 15 15 C 1.54941 * 103.22826 * 200.28546 * 14 13 2 16 16 C 1.54594 * 102.92185 * 37.41381 * 15 14 13 17 17 H 1.08999 * 110.30950 * 97.06258 * 16 15 14 18 18 N 1.46901 * 110.30749 * 219.12864 * 16 15 14 19 19 C 1.47906 * 111.00074 * 303.06082 * 13 2 1 20 20 H 1.09003 * 109.91513 * 26.48550 * 19 13 2 21 21 C 1.52998 * 109.91765 * 265.19834 * 19 13 2 22 22 H 1.09004 * 109.47429 * 186.02416 * 1 2 3 23 23 H 1.09005 * 109.47185 * 306.01476 * 1 2 3 24 24 H 1.08994 * 109.47506 * 66.01827 * 1 2 3 25 25 H 1.08998 * 109.47023 * 295.74333 * 4 2 1 26 26 H 1.08995 * 109.46879 * 55.74568 * 4 2 1 27 27 H 0.97001 * 120.00233 * 180.02562 * 8 7 5 28 28 H 1.09007 * 110.66370 * 318.71674 * 14 13 2 29 29 H 1.08996 * 110.66945 * 81.84524 * 14 13 2 30 30 H 1.08996 * 110.72127 * 155.77590 * 15 14 13 31 31 H 1.09003 * 110.71749 * 278.87440 * 15 14 13 32 32 H 1.00902 * 110.99790 * 298.55108 * 18 16 15 33 33 H 1.00898 * 111.00320 * 62.50071 * 18 16 15 34 34 H 1.08999 * 109.47599 * 59.99293 * 21 19 13 35 35 H 1.09003 * 109.47455 * 179.97438 * 21 19 13 36 36 H 1.09002 * 109.46860 * 299.99465 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5433 -0.6306 -1.3031 6 1 4.0754 -0.0430 -0.5697 7 6 4.2393 -1.2979 -2.2887 8 7 3.5912 -2.0131 -3.1820 9 14 6.1027 -1.1862 -2.3550 10 1 6.6756 -1.7144 -1.0909 11 1 6.6063 -1.9879 -3.4991 12 1 6.5077 0.2321 -2.5274 13 7 2.0197 -0.6925 1.1994 14 6 1.5525 -2.1022 1.2282 15 6 1.6881 -2.4902 2.7221 16 6 1.2738 -1.1936 3.4550 17 1 0.2262 -1.2450 3.7516 18 7 2.1261 -0.9787 4.6321 19 6 1.4862 -0.0658 2.4283 20 1 0.5366 0.4241 2.2131 21 6 2.4905 0.9521 2.9724 22 1 -0.3634 -1.0220 0.1079 23 1 -0.3634 0.6043 0.8313 24 1 -0.3634 0.4177 -0.9389 25 1 1.7402 -1.7685 -1.2120 26 1 1.6156 -0.2533 -2.1375 27 1 4.0808 -2.4829 -3.8751 28 1 0.5133 -2.1697 0.9061 29 1 2.1903 -2.7317 0.6078 30 1 1.0113 -3.3073 2.9713 31 1 2.7178 -2.7583 2.9589 32 1 2.0295 -1.7362 5.2916 33 1 3.0904 -0.8548 4.3625 34 1 2.6679 1.7238 2.2234 35 1 2.0902 1.4096 3.8772 36 1 3.4289 0.4484 3.2043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695785245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:46 Heat of formation + Delta-G solvation = -16.289996 kcal Electronic energy + Delta-G solvation = -15145.864001 eV Core-core repulsion = 12856.844688 eV Total energy + Delta-G solvation = -2289.019313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76334 -36.69527 -34.61633 -32.51126 -31.96127 -29.28815 -28.30509 -26.02511 -25.10259 -23.14677 -20.76521 -19.79523 -18.38227 -17.83873 -16.52901 -16.44418 -16.11032 -15.33070 -14.91310 -14.45964 -14.15020 -13.92044 -13.71834 -13.24851 -13.09986 -12.94168 -12.74657 -12.58818 -12.48614 -12.33451 -12.09547 -11.83520 -11.50521 -11.41742 -11.16078 -10.93651 -10.49470 -9.52335 -8.97045 -8.11500 -6.16573 1.40005 1.42710 1.50275 2.45816 3.15845 3.28198 3.64478 3.73536 3.94241 4.15862 4.24694 4.39615 4.43823 4.52383 4.56221 4.63464 4.82600 4.88600 4.94954 5.02721 5.14197 5.17611 5.20413 5.27670 5.31477 5.46521 5.57319 5.71177 5.87794 6.23349 6.31299 6.35977 6.51917 6.69793 6.96606 7.49119 9.00238 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033270 B = 0.009400 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.385526 B = 2977.861453 C = 3233.996045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H 0.060 0.940 4 C 0.036 3.964 5 C -0.500 4.500 6 H 0.055 0.945 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.504 5.504 14 C 0.038 3.962 15 C -0.148 4.148 16 C 0.097 3.903 17 H 0.094 0.906 18 N -0.835 5.835 19 C 0.049 3.951 20 H 0.060 0.940 21 C -0.112 4.112 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.056 0.944 25 H -0.001 1.001 26 H -0.012 1.012 27 H 0.259 0.741 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.347 0.653 33 H 0.345 0.655 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 1.351 13.898 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.023 4.023 3 H 0.078 0.922 4 C -0.001 4.001 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.228 5.228 14 C -0.090 4.090 15 C -0.188 4.188 16 C -0.016 4.016 17 H 0.112 0.888 18 N -0.366 5.366 19 C -0.059 4.059 20 H 0.078 0.922 21 C -0.170 4.170 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.017 0.983 26 H 0.006 0.994 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.805 1.957 13.872 14.811 hybrid contribution 0.572 -1.117 -1.164 1.711 sum -4.232 0.840 12.709 13.421 Atomic orbital electron populations 1.22431 0.97296 1.01807 1.02107 1.21693 0.92102 0.97395 0.91144 0.92191 1.19037 0.95228 0.94449 0.91355 1.21422 0.93106 1.28348 1.10963 0.92704 1.25846 1.02945 0.95563 0.95690 1.70084 1.37121 1.33672 1.17274 0.85630 0.80555 0.78218 0.77367 1.19738 1.21226 1.19532 1.64836 1.55380 1.01587 1.01025 1.23040 0.98099 0.90817 0.97029 1.23308 1.01835 0.99237 0.94431 1.22179 0.98025 0.91677 0.89707 0.88806 1.59068 1.12973 1.50143 1.14461 1.22649 0.97586 0.95789 0.89881 0.92248 1.21439 0.98701 0.97168 0.99689 0.92605 0.91074 0.92540 0.98275 0.99412 0.93254 0.93527 0.93447 0.89632 0.91685 0.83950 0.84046 0.94877 0.90654 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.05 8.54 71.98 0.61 -5.43 16 2 C 0.09 3.57 2.43 44.91 0.11 3.67 16 3 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.04 1.93 4.28 29.85 0.13 2.06 16 5 C -0.50 -28.89 8.82 25.60 0.23 -28.66 16 6 H 0.05 3.15 7.75 -2.91 -0.02 3.13 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 9 Si 0.96 46.04 29.54 68.60 2.03 48.07 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 N -0.50 -19.12 4.65 -833.09 -3.88 -23.00 16 14 C 0.04 1.38 5.23 86.65 0.45 1.84 16 15 C -0.15 -3.98 6.76 31.80 0.21 -3.76 16 16 C 0.10 2.35 4.12 45.79 0.19 2.54 16 17 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 18 N -0.84 -17.29 8.22 -165.05 -1.36 -18.64 16 19 C 0.05 1.46 2.84 45.06 0.13 1.59 16 20 H 0.06 1.72 5.41 -2.39 -0.01 1.71 16 21 C -0.11 -3.17 8.50 71.98 0.61 -2.56 16 22 H 0.06 1.87 5.84 -2.39 -0.01 1.85 16 23 H 0.07 2.04 6.14 -2.38 -0.01 2.03 16 24 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.00 -0.06 6.71 -2.39 -0.02 -0.08 16 26 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.05 1.62 5.63 -2.38 -0.01 1.61 16 29 H 0.05 2.08 7.56 -2.39 -0.02 2.06 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 32 H 0.35 5.71 9.06 -89.69 -0.81 4.90 16 33 H 0.34 7.60 6.99 -89.70 -0.63 6.98 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.86 7.95 -2.39 -0.02 1.84 16 36 H 0.05 1.50 6.56 -2.39 -0.02 1.49 16 Total: -1.00 -64.15 274.81 -0.16 -64.30 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.37 Total: 15.73 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 3.14 Total: -28.51 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -4.95 Total: -99.59 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -64.15 -0.16 -64.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.014 kcal (2) G-P(sol) polarization free energy of solvation -64.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds