Wall clock time and date at job start Mon Mar 30 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47557 * 2 1 4 4 C 1.53002 * 109.47007 * 239.99383 * 2 1 3 5 5 C 1.50705 * 109.46987 * 175.72787 * 4 2 1 6 6 H 1.08005 * 119.99716 * 4.92406 * 5 4 2 7 7 C 1.37875 * 119.99796 * 184.92992 * 5 4 2 8 8 N 1.31515 * 119.99963 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99800 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47368 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47368 * 119.99832 * 9 7 5 12 12 H 1.48501 * 109.47307 * 239.99579 * 9 7 5 13 13 N 1.46904 * 109.46848 * 120.00193 * 2 1 3 14 14 C 1.48540 * 110.99771 * 303.82452 * 13 2 1 15 15 C 1.54931 * 103.22771 * 159.72194 * 14 13 2 16 16 C 1.54598 * 102.92323 * 322.58474 * 15 14 13 17 17 H 1.08992 * 110.30543 * 263.04421 * 16 15 14 18 18 N 1.46898 * 110.39270 * 140.91652 * 16 15 14 19 19 C 1.47896 * 111.00194 * 61.21840 * 13 2 1 20 20 H 1.08999 * 109.91883 * 333.51048 * 19 13 2 21 21 C 1.52997 * 109.91729 * 94.80669 * 19 13 2 22 22 H 1.09001 * 109.47025 * 66.31993 * 1 2 3 23 23 H 1.09004 * 109.47147 * 306.32245 * 1 2 3 24 24 H 1.09001 * 109.47554 * 186.31927 * 1 2 3 25 25 H 1.09001 * 109.47216 * 295.72814 * 4 2 1 26 26 H 1.09001 * 109.46950 * 55.73384 * 4 2 1 27 27 H 0.97007 * 119.99344 * 180.02562 * 8 7 5 28 28 H 1.09008 * 110.66211 * 278.15905 * 14 13 2 29 29 H 1.08996 * 110.66797 * 41.28366 * 14 13 2 30 30 H 1.09000 * 110.72422 * 204.22220 * 15 14 13 31 31 H 1.09004 * 110.87608 * 81.01544 * 15 14 13 32 32 H 1.00896 * 111.00349 * 64.23463 * 18 16 15 33 33 H 1.00903 * 110.99701 * 188.19085 * 18 16 15 34 34 H 1.08999 * 109.47358 * 62.66914 * 21 19 13 35 35 H 1.09003 * 109.47186 * 182.67222 * 21 19 13 36 36 H 1.09001 * 109.47262 * 302.66913 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5433 -0.6304 -1.3033 6 1 4.0868 -0.1802 -0.4857 7 6 4.2248 -1.1218 -2.3965 8 7 3.5629 -1.6703 -3.3918 9 14 6.0882 -1.0096 -2.4632 10 1 6.5893 -0.3547 -1.2281 11 1 6.6629 -2.3749 -2.5680 12 1 6.4939 -0.2096 -3.6467 13 7 2.0196 -0.6926 1.1995 14 6 1.4692 -0.0745 2.4329 15 6 1.6347 -1.1916 3.4935 16 6 1.3262 -2.4774 2.6924 17 1 0.2882 -2.7753 2.8404 18 7 2.2299 -3.5622 3.0977 19 6 1.5695 -2.1012 1.2190 20 1 0.6442 -2.2033 0.6521 21 6 2.6525 -3.0028 0.6230 22 1 -0.3633 0.4127 -0.9412 23 1 -0.3634 0.6087 0.8280 24 1 -0.3634 -1.0214 0.1131 25 1 1.7405 -1.7688 -1.2116 26 1 1.6155 -0.2537 -2.1376 27 1 4.0425 -2.0163 -4.1608 28 1 2.0452 0.8083 2.7108 29 1 0.4171 0.1775 2.3004 30 1 0.9190 -1.0619 4.3053 31 1 2.6539 -1.2129 3.8795 32 1 2.0793 -3.8171 4.0622 33 1 2.1283 -4.3628 2.4919 34 1 3.5513 -2.9457 1.2370 35 1 2.2948 -4.0321 0.5973 36 1 2.8829 -2.6729 -0.3900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695785440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:49 Heat of formation + Delta-G solvation = 11.518109 kcal Electronic energy + Delta-G solvation = -15340.691062 eV Core-core repulsion = 13052.877599 eV Total energy + Delta-G solvation = -2287.813463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.32928 -35.01340 -32.81415 -31.32638 -30.02084 -27.55102 -26.91333 -24.52801 -23.16126 -20.91479 -19.99571 -18.02588 -16.44557 -16.07618 -15.10836 -14.86770 -14.39000 -14.05312 -13.50065 -13.26551 -12.40632 -12.12197 -11.79404 -11.77959 -11.32254 -11.11296 -11.01675 -10.87772 -10.64827 -10.58443 -10.47170 -10.32346 -9.88039 -9.40003 -9.02005 -8.94324 -8.40657 -8.22427 -7.44167 -5.85419 -3.82223 3.41793 3.49562 3.56481 4.60067 4.67091 4.75951 5.02827 5.15416 5.48714 5.52163 5.58483 5.82992 5.93841 5.95809 5.99874 6.06504 6.09742 6.27918 6.35846 6.51535 6.59127 6.61768 6.75846 6.99746 7.15968 7.41216 7.53523 7.64089 7.64838 7.88633 7.94637 8.08665 8.18092 8.63009 9.25244 9.79115 11.26147 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.010502 C = 0.009301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.733898 B = 2665.576111 C = 3009.581323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.075 3.925 3 H 0.071 0.929 4 C 0.023 3.977 5 C -0.484 4.484 6 H 0.063 0.937 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.886 3.114 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.479 5.479 14 C 0.025 3.975 15 C -0.115 4.115 16 C 0.080 3.920 17 H 0.028 0.972 18 N -0.833 5.833 19 C 0.075 3.925 20 H 0.047 0.953 21 C -0.141 4.141 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.256 0.744 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.329 0.671 33 H 0.342 0.658 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -1.053 11.220 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 H 0.089 0.911 4 C -0.014 4.014 5 C -0.523 4.523 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.203 5.203 14 C -0.103 4.103 15 C -0.153 4.153 16 C -0.032 4.032 17 H 0.046 0.954 18 N -0.363 5.363 19 C -0.033 4.033 20 H 0.065 0.935 21 C -0.198 4.198 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.843 -0.580 10.864 11.909 hybrid contribution -0.867 -0.580 0.039 1.044 sum -5.709 -1.160 10.903 12.362 Atomic orbital electron populations 1.22567 1.00105 1.00917 1.01017 1.22050 0.89896 0.98881 0.92562 0.91085 1.19386 0.96530 0.95599 0.89900 1.21201 0.91565 1.36814 1.02687 0.91862 1.24995 0.97873 0.96066 0.95926 1.69982 1.34990 1.41333 1.08177 0.86612 0.86673 0.77492 0.77709 1.19682 1.21339 1.21539 1.64946 1.54088 1.00620 1.00618 1.23262 0.97954 0.97514 0.91610 1.22524 1.02203 0.93833 0.96763 1.22246 0.92396 0.92140 0.96403 0.95412 1.58899 1.58197 1.12626 1.06624 1.22320 0.97640 0.90744 0.92628 0.93542 1.21950 0.98210 0.94822 1.04850 0.92428 0.93805 0.93019 0.95833 0.96273 0.93444 0.90759 0.94103 0.92527 0.89952 0.85929 0.84304 0.91638 0.95583 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 8.43 37.16 0.31 -2.98 16 2 C 0.07 1.55 2.44 -67.71 -0.17 1.39 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.02 0.57 3.90 -27.88 -0.11 0.47 16 5 C -0.48 -13.42 7.18 -34.44 -0.25 -13.67 16 6 H 0.06 1.80 7.72 -52.48 -0.41 1.39 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.48 -9.41 4.67 -214.67 -1.00 -10.41 16 14 C 0.03 0.40 6.37 -1.90 -0.01 0.39 16 15 C -0.11 -1.65 6.78 -24.87 -0.17 -1.81 16 16 C 0.08 1.20 4.11 -66.35 -0.27 0.93 16 17 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 18 N -0.83 -11.37 7.95 -3.52 -0.03 -11.40 16 19 C 0.08 1.39 2.25 -66.64 -0.15 1.24 16 20 H 0.05 0.89 5.27 -51.93 -0.27 0.62 16 21 C -0.14 -2.87 7.81 37.16 0.29 -2.58 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.68 6.34 -51.93 -0.33 0.35 16 24 H 0.05 0.90 5.86 -51.93 -0.30 0.60 16 25 H 0.02 0.62 5.24 -51.93 -0.27 0.35 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.04 0.62 5.65 -51.93 -0.29 0.32 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 32 H 0.33 3.65 9.08 -39.29 -0.36 3.29 16 33 H 0.34 4.48 7.31 -39.29 -0.29 4.19 16 34 H 0.06 1.39 7.53 -51.93 -0.39 1.00 16 35 H 0.03 0.46 7.15 -51.93 -0.37 0.09 16 36 H 0.10 2.56 4.09 -51.93 -0.21 2.35 16 LS Contribution 267.96 15.07 4.04 4.04 Total: -1.00 -29.48 267.96 -7.48 -36.96 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.59 Total: 5.13 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.62 Total: -15.28 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.29 Total: -48.05 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.48 -7.48 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.479 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds