Wall clock time and date at job start Mon Mar 30 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47557 * 2 1 4 4 C 1.53002 * 109.47007 * 239.99383 * 2 1 3 5 5 C 1.50705 * 109.46987 * 175.72787 * 4 2 1 6 6 H 1.08005 * 119.99716 * 4.92406 * 5 4 2 7 7 C 1.37875 * 119.99796 * 184.92992 * 5 4 2 8 8 N 1.31515 * 119.99963 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99800 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47368 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47368 * 119.99832 * 9 7 5 12 12 H 1.48501 * 109.47307 * 239.99579 * 9 7 5 13 13 N 1.46904 * 109.46848 * 120.00193 * 2 1 3 14 14 C 1.48540 * 110.99771 * 303.82452 * 13 2 1 15 15 C 1.54931 * 103.22771 * 159.72194 * 14 13 2 16 16 C 1.54598 * 102.92323 * 322.58474 * 15 14 13 17 17 H 1.08992 * 110.30543 * 263.04421 * 16 15 14 18 18 N 1.46898 * 110.39270 * 140.91652 * 16 15 14 19 19 C 1.47896 * 111.00194 * 61.21840 * 13 2 1 20 20 H 1.08999 * 109.91883 * 333.51048 * 19 13 2 21 21 C 1.52997 * 109.91729 * 94.80669 * 19 13 2 22 22 H 1.09001 * 109.47025 * 66.31993 * 1 2 3 23 23 H 1.09004 * 109.47147 * 306.32245 * 1 2 3 24 24 H 1.09001 * 109.47554 * 186.31927 * 1 2 3 25 25 H 1.09001 * 109.47216 * 295.72814 * 4 2 1 26 26 H 1.09001 * 109.46950 * 55.73384 * 4 2 1 27 27 H 0.97007 * 119.99344 * 180.02562 * 8 7 5 28 28 H 1.09008 * 110.66211 * 278.15905 * 14 13 2 29 29 H 1.08996 * 110.66797 * 41.28366 * 14 13 2 30 30 H 1.09000 * 110.72422 * 204.22220 * 15 14 13 31 31 H 1.09004 * 110.87608 * 81.01544 * 15 14 13 32 32 H 1.00896 * 111.00349 * 64.23463 * 18 16 15 33 33 H 1.00903 * 110.99701 * 188.19085 * 18 16 15 34 34 H 1.08999 * 109.47358 * 62.66914 * 21 19 13 35 35 H 1.09003 * 109.47186 * 182.67222 * 21 19 13 36 36 H 1.09001 * 109.47262 * 302.66913 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5433 -0.6304 -1.3033 6 1 4.0868 -0.1802 -0.4857 7 6 4.2248 -1.1218 -2.3965 8 7 3.5629 -1.6703 -3.3918 9 14 6.0882 -1.0096 -2.4632 10 1 6.5893 -0.3547 -1.2281 11 1 6.6629 -2.3749 -2.5680 12 1 6.4939 -0.2096 -3.6467 13 7 2.0196 -0.6926 1.1995 14 6 1.4692 -0.0745 2.4329 15 6 1.6347 -1.1916 3.4935 16 6 1.3262 -2.4774 2.6924 17 1 0.2882 -2.7753 2.8404 18 7 2.2299 -3.5622 3.0977 19 6 1.5695 -2.1012 1.2190 20 1 0.6442 -2.2033 0.6521 21 6 2.6525 -3.0028 0.6230 22 1 -0.3633 0.4127 -0.9412 23 1 -0.3634 0.6087 0.8280 24 1 -0.3634 -1.0214 0.1131 25 1 1.7405 -1.7688 -1.2116 26 1 1.6155 -0.2537 -2.1376 27 1 4.0425 -2.0163 -4.1608 28 1 2.0452 0.8083 2.7108 29 1 0.4171 0.1775 2.3004 30 1 0.9190 -1.0619 4.3053 31 1 2.6539 -1.2129 3.8795 32 1 2.0793 -3.8171 4.0622 33 1 2.1283 -4.3628 2.4919 34 1 3.5513 -2.9457 1.2370 35 1 2.2948 -4.0321 0.5973 36 1 2.8829 -2.6729 -0.3900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695785440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:49 Heat of formation + Delta-G solvation = -9.904771 kcal Electronic energy + Delta-G solvation = -15341.620028 eV Core-core repulsion = 13052.877599 eV Total energy + Delta-G solvation = -2288.742429 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74555 -36.50333 -34.71898 -32.88883 -31.45990 -29.39768 -28.33661 -25.91821 -25.12784 -22.45196 -21.37230 -19.53137 -18.26365 -17.83010 -16.50000 -16.22147 -16.13373 -15.39854 -14.93983 -14.88667 -14.11223 -13.81597 -13.62556 -13.26427 -12.89766 -12.76409 -12.56082 -12.42935 -12.37969 -12.28155 -12.04218 -11.72349 -11.47859 -11.15606 -11.06824 -10.83377 -10.43541 -9.48303 -8.90585 -8.06326 -6.08573 1.40761 1.42996 1.55618 2.49724 3.21743 3.32290 3.67320 3.77826 3.90344 4.21193 4.30790 4.45273 4.49784 4.55640 4.63784 4.73601 4.90355 4.93588 5.04715 5.05970 5.10296 5.21234 5.24808 5.38342 5.49888 5.52626 5.74296 5.89230 6.04634 6.32414 6.38325 6.45299 6.58875 6.75414 7.04097 7.55894 9.05485 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.010502 C = 0.009301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.733898 B = 2665.576111 C = 3009.581323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 H 0.060 0.940 4 C 0.031 3.969 5 C -0.483 4.483 6 H 0.053 0.947 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.505 5.505 14 C 0.024 3.976 15 C -0.106 4.106 16 C 0.088 3.912 17 H 0.048 0.952 18 N -0.841 5.841 19 C 0.073 3.927 20 H 0.040 0.960 21 C -0.130 4.130 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.009 0.991 26 H -0.012 1.012 27 H 0.257 0.743 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.347 0.653 33 H 0.345 0.655 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 -0.997 13.325 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 H 0.079 0.921 4 C -0.006 4.006 5 C -0.522 4.522 6 H 0.071 0.929 7 C -0.196 4.196 8 N -0.580 5.580 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.229 5.229 14 C -0.104 4.104 15 C -0.144 4.144 16 C -0.024 4.024 17 H 0.066 0.934 18 N -0.374 5.374 19 C -0.036 4.036 20 H 0.057 0.943 21 C -0.188 4.188 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.027 0.973 26 H 0.006 0.994 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.329 -0.519 12.995 14.054 hybrid contribution -0.714 -0.611 -0.602 1.116 sum -6.042 -1.129 12.392 13.833 Atomic orbital electron populations 1.22425 0.97360 1.01613 1.02098 1.21755 0.92068 0.97550 0.91424 0.92140 1.19219 0.95246 0.94960 0.91133 1.21367 0.92935 1.35837 1.02044 0.92904 1.25721 1.02103 0.95998 0.95791 1.70092 1.36602 1.42511 1.08795 0.85659 0.81664 0.77514 0.77780 1.19291 1.20991 1.20965 1.64820 1.55336 1.01420 1.01320 1.23357 0.98663 0.98093 0.90266 1.22496 1.02604 0.92445 0.96888 1.22143 0.93670 0.92944 0.93685 0.93417 1.58812 1.58119 1.12587 1.07930 1.22310 0.96219 0.89874 0.95173 0.94261 1.21758 0.98737 0.96488 1.01798 0.92700 0.90966 0.92848 0.97275 0.99372 0.93429 0.90544 0.92540 0.89180 0.91016 0.83937 0.84037 0.92851 0.93653 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.95 8.43 71.98 0.61 -5.34 16 2 C 0.08 3.36 2.44 44.92 0.11 3.47 16 3 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.03 1.64 3.90 29.85 0.12 1.75 16 5 C -0.48 -27.49 7.18 25.60 0.18 -27.31 16 6 H 0.05 3.06 7.72 -2.91 -0.02 3.04 16 7 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 8 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.95 46.30 29.54 68.60 2.03 48.33 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 N -0.50 -19.35 4.67 -833.08 -3.89 -23.24 16 14 C 0.02 0.70 6.37 86.65 0.55 1.25 16 15 C -0.11 -2.66 6.78 31.80 0.22 -2.44 16 16 C 0.09 2.37 4.11 45.80 0.19 2.56 16 17 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 18 N -0.84 -20.82 7.95 -165.04 -1.31 -22.13 16 19 C 0.07 2.61 2.25 45.06 0.10 2.71 16 20 H 0.04 1.46 5.27 -2.39 -0.01 1.45 16 21 C -0.13 -5.32 7.81 71.98 0.56 -4.76 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 2.02 6.34 -2.39 -0.02 2.00 16 24 H 0.05 1.78 5.86 -2.39 -0.01 1.76 16 25 H 0.01 0.50 5.24 -2.39 -0.01 0.49 16 26 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 28 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.06 1.49 5.65 -2.39 -0.01 1.48 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.97 8.06 -2.38 -0.02 1.96 16 32 H 0.35 6.56 9.08 -89.70 -0.81 5.75 16 33 H 0.35 8.28 7.31 -89.69 -0.66 7.63 16 34 H 0.05 2.26 7.53 -2.39 -0.02 2.24 16 35 H 0.04 1.60 7.15 -2.39 -0.02 1.59 16 36 H 0.06 2.90 4.09 -2.39 -0.01 2.89 16 Total: -1.00 -64.42 267.96 -0.19 -64.60 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.39 Total: 17.24 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 3.10 Total: -27.65 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -4.92 Total: -102.52 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -64.42 -0.19 -64.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.698 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds