Wall clock time and date at job start Mon Mar 30 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47543 * 2 1 4 4 C 1.53008 * 109.46717 * 119.99931 * 2 1 3 5 5 C 1.50702 * 109.46512 * 183.66443 * 4 2 1 6 6 H 1.07995 * 120.00362 * 5.01491 * 5 4 2 7 7 C 1.37883 * 119.99288 * 185.00704 * 5 4 2 8 8 N 1.31512 * 120.00252 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99700 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46895 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46710 * 120.00271 * 9 7 5 12 12 H 1.48493 * 109.47167 * 240.00529 * 9 7 5 13 13 N 1.46897 * 109.47043 * 239.99334 * 2 1 3 14 14 C 1.46906 * 110.99575 * 74.77317 * 13 2 1 15 15 C 1.46897 * 111.00445 * 310.81828 * 13 2 1 16 16 H 1.08999 * 110.87447 * 323.16639 * 15 13 2 17 17 C 1.55144 * 110.99093 * 199.31883 * 15 13 2 18 18 C 1.54320 * 103.01961 * 206.21607 * 17 15 13 19 19 N 1.47448 * 107.23005 * 22.28546 * 18 17 15 20 20 C 1.47848 * 108.56827 * 0.98970 * 19 18 17 21 21 H 1.08996 * 109.47347 * 188.74321 * 1 2 3 22 22 H 1.09000 * 109.47049 * 308.75108 * 1 2 3 23 23 H 1.08998 * 109.46863 * 68.74074 * 1 2 3 24 24 H 1.08993 * 109.47219 * 303.66444 * 4 2 1 25 25 H 1.08997 * 109.47047 * 63.66801 * 4 2 1 26 26 H 0.97007 * 119.99970 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46921 * 304.00021 * 14 13 2 28 28 H 1.08997 * 109.47180 * 64.00248 * 14 13 2 29 29 H 1.09000 * 109.47044 * 183.99914 * 14 13 2 30 30 H 1.08997 * 110.70154 * 87.83895 * 17 15 13 31 31 H 1.08995 * 110.70562 * 324.60182 * 17 15 13 32 32 H 1.08999 * 109.89046 * 262.88216 * 18 17 15 33 33 H 1.08995 * 110.02108 * 141.76384 * 18 17 15 34 34 H 1.00899 * 110.99756 * 123.26064 * 19 18 17 35 35 H 1.09001 * 110.37277 * 94.73543 * 20 19 18 36 36 H 1.09003 * 110.36857 * 217.06948 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5442 -0.6431 1.2955 6 1 4.0777 -0.0624 0.5577 7 6 4.2393 -1.3129 2.2801 8 7 3.5896 -2.0203 3.1784 9 14 6.1039 -1.2155 2.3379 10 1 6.5897 -0.3617 1.2242 11 1 6.5289 -0.6274 3.6336 12 1 6.6753 -2.5793 2.2021 13 7 2.0196 -0.6926 -1.1993 14 6 1.8554 0.1452 -2.3949 15 6 1.3500 -1.9890 -1.3689 16 1 1.1749 -2.4649 -0.4041 17 6 2.1658 -2.9175 -2.3066 18 6 1.0876 -3.8517 -2.8950 19 7 -0.2069 -3.1566 -2.7717 20 6 0.0266 -1.8318 -2.1585 21 1 -0.3634 -1.0157 0.1562 22 1 -0.3633 0.6433 0.8015 23 1 -0.3633 0.3726 -0.9577 24 1 1.6239 -0.2468 2.1380 25 1 1.7312 -1.7661 1.2171 26 1 4.0787 -2.4919 3.8709 27 1 0.8099 0.4375 -2.4928 28 1 2.4750 1.0371 -2.3014 29 1 2.1596 -0.4176 -3.2774 30 1 2.9017 -3.4875 -1.7395 31 1 2.6483 -2.3407 -3.0956 32 1 1.0613 -4.7865 -2.3352 33 1 1.3014 -4.0539 -3.9445 34 1 -0.6551 -3.0649 -3.6711 35 1 0.1334 -1.0698 -2.9305 36 1 -0.7903 -1.5770 -1.4832 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:03 Heat of formation + Delta-G solvation = 11.873202 kcal Electronic energy + Delta-G solvation = -15168.867705 eV Core-core repulsion = 12881.069640 eV Total energy + Delta-G solvation = -2287.798065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.39265 -36.03795 -32.81719 -30.85231 -29.33509 -27.91230 -27.15202 -25.12518 -22.70402 -20.98609 -20.49592 -18.49779 -16.42648 -16.07666 -15.98402 -14.52890 -14.28524 -13.82067 -13.71445 -13.18251 -12.89037 -12.52741 -11.92676 -11.71784 -11.62834 -11.43646 -11.28903 -11.08568 -10.95170 -10.80925 -10.53287 -10.38451 -10.10577 -9.88138 -9.15934 -8.92939 -8.26407 -8.23112 -7.46855 -5.85857 -3.83271 3.39506 3.46905 3.52223 4.26784 4.58663 4.79511 5.00521 5.12088 5.43160 5.48115 5.52864 5.63771 5.68331 5.76957 5.82573 5.90675 5.96914 6.08445 6.13129 6.20838 6.26910 6.44901 6.54471 6.68108 6.70566 6.96980 7.02771 7.46543 7.57549 7.68770 7.91836 8.05443 8.14719 8.60829 9.21927 9.77870 11.26135 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033218 B = 0.009413 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.717280 B = 2973.976980 C = 3229.392508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.502 5.502 14 C 0.019 3.981 15 C 0.085 3.915 16 H 0.102 0.898 17 C -0.132 4.132 18 C 0.045 3.955 19 N -0.684 5.684 20 C 0.002 3.998 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.015 0.985 25 H 0.022 0.978 26 H 0.256 0.744 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.330 0.670 35 H 0.047 0.953 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 0.632 -11.657 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.023 4.023 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.224 5.224 14 C -0.129 4.129 15 C -0.025 4.025 16 H 0.120 0.880 17 C -0.171 4.171 18 C -0.084 4.084 19 N -0.313 5.313 20 C -0.129 4.129 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.065 0.935 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.487 0.127 -10.835 12.146 hybrid contribution 0.595 0.604 -0.794 1.162 sum -4.892 0.731 -11.629 12.637 Atomic orbital electron populations 1.22756 0.99542 1.01797 1.00266 1.21952 0.90196 0.98124 0.92022 0.91360 1.19197 0.96357 0.95474 0.89640 1.21169 0.91593 1.28828 1.10948 0.92315 1.24995 0.97951 0.95902 0.96046 1.69974 1.34997 1.32991 1.16458 0.86591 0.86598 0.77566 0.77543 1.19860 1.21437 1.21341 1.62178 1.55821 1.02372 1.02004 1.22461 0.98696 0.97796 0.93944 1.22781 0.89357 0.91259 0.99100 0.88005 1.22772 0.97866 0.97451 0.99033 1.22612 0.88337 0.98271 0.99181 1.61832 1.22509 1.19216 1.27724 1.24030 1.00187 0.89924 0.98714 0.92258 0.92803 0.93975 0.96660 0.95949 0.93410 0.95962 0.91920 0.92564 0.90146 0.91661 0.90872 0.93631 0.85477 0.93458 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 7.39 37.16 0.27 -2.89 16 2 C 0.08 1.73 2.24 -67.71 -0.15 1.57 16 3 H 0.07 1.41 8.01 -51.93 -0.42 0.99 16 4 C 0.03 0.77 4.43 -27.88 -0.12 0.65 16 5 C -0.49 -13.72 8.80 -34.44 -0.30 -14.02 16 6 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.50 -9.54 4.35 -224.35 -0.98 -10.51 16 14 C 0.02 0.30 8.03 60.07 0.48 0.78 16 15 C 0.08 1.51 2.31 -65.58 -0.15 1.36 16 16 H 0.10 2.14 5.88 -51.93 -0.31 1.83 16 17 C -0.13 -2.12 6.50 -24.91 -0.16 -2.28 16 18 C 0.05 0.62 7.58 -2.83 -0.02 0.60 16 19 N -0.68 -9.48 7.39 -110.79 -0.82 -10.30 16 20 C 0.00 0.03 5.31 -2.30 -0.01 0.01 16 21 H 0.06 1.04 5.87 -51.93 -0.30 0.74 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.04 0.64 5.76 -51.93 -0.30 0.34 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.61 6.43 -51.93 -0.33 0.28 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.32 5.05 -51.93 -0.26 0.05 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.80 6.65 -51.93 -0.35 0.45 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.00 6.77 -51.93 -0.35 0.65 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.33 3.80 8.91 -39.29 -0.35 3.45 16 35 H 0.05 0.66 5.39 -51.93 -0.28 0.38 16 36 H 0.08 1.26 5.62 -51.93 -0.29 0.97 16 LS Contribution 269.19 15.07 4.06 4.06 Total: -1.00 -29.91 269.19 -7.91 -37.82 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.62 Total: 1.25 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.26 Total: -12.85 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -1.06 Total: -47.47 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.91 -7.91 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.694 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds