Wall clock time and date at job start Mon Mar 30 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47543 * 2 1 4 4 C 1.53008 * 109.46717 * 119.99931 * 2 1 3 5 5 C 1.50702 * 109.46512 * 183.66443 * 4 2 1 6 6 H 1.07995 * 120.00362 * 5.01491 * 5 4 2 7 7 C 1.37883 * 119.99288 * 185.00704 * 5 4 2 8 8 N 1.31512 * 120.00252 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99700 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46895 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46710 * 120.00271 * 9 7 5 12 12 H 1.48493 * 109.47167 * 240.00529 * 9 7 5 13 13 N 1.46897 * 109.47043 * 239.99334 * 2 1 3 14 14 C 1.46906 * 110.99575 * 74.77317 * 13 2 1 15 15 C 1.46897 * 111.00445 * 310.81828 * 13 2 1 16 16 H 1.08999 * 110.87447 * 323.16639 * 15 13 2 17 17 C 1.55144 * 110.99093 * 199.31883 * 15 13 2 18 18 C 1.54320 * 103.01961 * 206.21607 * 17 15 13 19 19 N 1.47448 * 107.23005 * 22.28546 * 18 17 15 20 20 C 1.47848 * 108.56827 * 0.98970 * 19 18 17 21 21 H 1.08996 * 109.47347 * 188.74321 * 1 2 3 22 22 H 1.09000 * 109.47049 * 308.75108 * 1 2 3 23 23 H 1.08998 * 109.46863 * 68.74074 * 1 2 3 24 24 H 1.08993 * 109.47219 * 303.66444 * 4 2 1 25 25 H 1.08997 * 109.47047 * 63.66801 * 4 2 1 26 26 H 0.97007 * 119.99970 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46921 * 304.00021 * 14 13 2 28 28 H 1.08997 * 109.47180 * 64.00248 * 14 13 2 29 29 H 1.09000 * 109.47044 * 183.99914 * 14 13 2 30 30 H 1.08997 * 110.70154 * 87.83895 * 17 15 13 31 31 H 1.08995 * 110.70562 * 324.60182 * 17 15 13 32 32 H 1.08999 * 109.89046 * 262.88216 * 18 17 15 33 33 H 1.08995 * 110.02108 * 141.76384 * 18 17 15 34 34 H 1.00899 * 110.99756 * 123.26064 * 19 18 17 35 35 H 1.09001 * 110.37277 * 94.73543 * 20 19 18 36 36 H 1.09003 * 110.36857 * 217.06948 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5442 -0.6431 1.2955 6 1 4.0777 -0.0624 0.5577 7 6 4.2393 -1.3129 2.2801 8 7 3.5896 -2.0203 3.1784 9 14 6.1039 -1.2155 2.3379 10 1 6.5897 -0.3617 1.2242 11 1 6.5289 -0.6274 3.6336 12 1 6.6753 -2.5793 2.2021 13 7 2.0196 -0.6926 -1.1993 14 6 1.8554 0.1452 -2.3949 15 6 1.3500 -1.9890 -1.3689 16 1 1.1749 -2.4649 -0.4041 17 6 2.1658 -2.9175 -2.3066 18 6 1.0876 -3.8517 -2.8950 19 7 -0.2069 -3.1566 -2.7717 20 6 0.0266 -1.8318 -2.1585 21 1 -0.3634 -1.0157 0.1562 22 1 -0.3633 0.6433 0.8015 23 1 -0.3633 0.3726 -0.9577 24 1 1.6239 -0.2468 2.1380 25 1 1.7312 -1.7661 1.2171 26 1 4.0787 -2.4919 3.8709 27 1 0.8099 0.4375 -2.4928 28 1 2.4750 1.0371 -2.3014 29 1 2.1596 -0.4176 -3.2774 30 1 2.9017 -3.4875 -1.7395 31 1 2.6483 -2.3407 -3.0956 32 1 1.0613 -4.7865 -2.3352 33 1 1.3014 -4.0539 -3.9445 34 1 -0.6551 -3.0649 -3.6711 35 1 0.1334 -1.0698 -2.9305 36 1 -0.7903 -1.5770 -1.4832 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695786017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:02 Heat of formation + Delta-G solvation = -10.376116 kcal Electronic energy + Delta-G solvation = -15169.832507 eV Core-core repulsion = 12881.069640 eV Total energy + Delta-G solvation = -2288.762868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74703 -37.43162 -34.89067 -32.50356 -30.64293 -29.29213 -28.83334 -26.58118 -24.66421 -22.16387 -22.00376 -19.96404 -18.36670 -17.51085 -17.46828 -16.50132 -15.69356 -15.26778 -14.99010 -14.58324 -14.38210 -13.99122 -13.61573 -13.37638 -13.13562 -12.94773 -12.72153 -12.61130 -12.44331 -12.37864 -12.20517 -12.16644 -11.67346 -11.46207 -11.04992 -10.97628 -10.47998 -9.34143 -8.88013 -8.09216 -6.13905 1.40615 1.41438 1.54492 2.47386 2.98866 3.25399 3.58127 3.80256 3.84146 4.15501 4.26921 4.33203 4.40499 4.44388 4.54035 4.55685 4.68788 4.77236 4.87715 4.93951 5.02812 5.06616 5.19877 5.24127 5.26956 5.35197 5.51398 5.68975 5.84101 5.90848 6.32779 6.45508 6.54323 6.55692 6.99814 7.51485 9.03042 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033218 B = 0.009413 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.717280 B = 2973.976980 C = 3229.392508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.066 0.934 4 C 0.037 3.963 5 C -0.495 4.495 6 H 0.057 0.943 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.527 5.527 14 C 0.022 3.978 15 C 0.081 3.919 16 H 0.057 0.943 17 C -0.131 4.131 18 C 0.052 3.948 19 N -0.691 5.691 20 C 0.015 3.985 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.070 0.930 24 H -0.011 1.011 25 H -0.007 1.007 26 H 0.258 0.742 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.349 0.651 35 H 0.067 0.933 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 1.271 -13.915 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 H 0.085 0.915 4 C 0.000 4.000 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.249 5.249 14 C -0.126 4.126 15 C -0.029 4.029 16 H 0.075 0.925 17 C -0.170 4.170 18 C -0.077 4.077 19 N -0.322 5.322 20 C -0.115 4.115 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.007 0.993 25 H 0.011 0.989 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.166 0.834 35 H 0.085 0.915 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.485 0.774 -13.120 14.241 hybrid contribution 0.578 0.389 -0.086 0.702 sum -4.906 1.163 -13.206 14.135 Atomic orbital electron populations 1.22604 0.96988 1.01525 1.01999 1.21634 0.92212 0.97014 0.90639 0.91531 1.19044 0.95280 0.94157 0.91551 1.21485 0.93021 1.28306 1.10571 0.92507 1.25862 1.02930 0.95667 0.95780 1.70109 1.36927 1.34016 1.17242 0.85519 0.80676 0.77666 0.77879 1.18867 1.20782 1.21027 1.62045 1.56815 1.03229 1.02803 1.22504 0.99971 0.97446 0.92673 1.22646 0.91624 0.90840 0.97796 0.92464 1.22747 0.98031 0.97478 0.98721 1.22545 0.87327 0.97168 1.00654 1.61740 1.22686 1.18628 1.29106 1.23821 0.97984 0.91024 0.98658 0.93217 0.92432 0.91095 0.99287 0.98863 0.93350 0.94112 0.91797 0.90955 0.92524 0.90428 0.91665 0.90577 0.83443 0.91471 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.76 7.39 71.98 0.53 -5.23 16 2 C 0.09 3.80 2.24 44.92 0.10 3.90 16 3 H 0.07 2.71 8.01 -2.39 -0.02 2.69 16 4 C 0.04 1.96 4.43 29.85 0.13 2.09 16 5 C -0.50 -28.55 8.80 25.60 0.23 -28.32 16 6 H 0.06 3.23 7.75 -2.91 -0.02 3.21 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 9 Si 0.96 46.11 29.54 68.60 2.03 48.13 16 10 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 N -0.53 -19.61 4.35 -863.71 -3.76 -23.36 16 14 C 0.02 0.61 8.03 127.69 1.03 1.63 16 15 C 0.08 2.85 2.31 46.30 0.11 2.96 16 16 H 0.06 2.53 5.88 -2.39 -0.01 2.51 16 17 C -0.13 -4.07 6.50 31.78 0.21 -3.86 16 18 C 0.05 1.32 7.58 86.65 0.66 1.98 16 19 N -0.69 -17.41 7.39 -504.42 -3.73 -21.14 16 20 C 0.02 0.43 5.31 86.77 0.46 0.89 16 21 H 0.05 1.75 5.87 -2.39 -0.01 1.74 16 22 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 1.95 5.76 -2.39 -0.01 1.94 16 24 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 25 H -0.01 -0.41 6.43 -2.39 -0.02 -0.42 16 26 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 27 H 0.04 1.00 5.05 -2.39 -0.01 0.98 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.80 6.65 -2.39 -0.02 1.78 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.20 6.77 -2.39 -0.02 2.18 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.35 6.75 8.91 -89.69 -0.80 5.95 16 35 H 0.07 1.60 5.39 -2.39 -0.01 1.59 16 36 H 0.08 2.20 5.62 -2.39 -0.01 2.18 16 Total: -1.00 -65.67 269.19 -1.00 -66.67 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.27 Total: 12.05 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.91 Total: -23.90 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -7.20 Total: -102.96 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -65.67 -1.00 -66.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.290 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds