Wall clock time and date at job start Mon Mar 30 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.50698 * 109.47184 * 175.00464 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99809 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99912 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47123 * 90.00333 * 9 7 5 11 11 H 1.48506 * 109.46940 * 210.00455 * 9 7 5 12 12 H 1.48493 * 109.47121 * 329.99876 * 9 7 5 13 13 N 1.46895 * 109.47068 * 119.99967 * 2 1 3 14 14 C 1.46905 * 111.00014 * 58.95636 * 13 2 1 15 15 C 1.46894 * 111.00313 * 294.99799 * 13 2 1 16 16 H 1.09004 * 110.62464 * 59.29890 * 15 13 2 17 17 C 1.55139 * 110.70865 * 182.39921 * 15 13 2 18 18 C 1.55117 * 101.55790 * 153.90503 * 17 15 13 19 19 N 1.47846 * 104.90809 * 323.16467 * 18 17 15 20 20 C 1.47440 * 108.56565 * 23.96857 * 19 18 17 21 21 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 23 23 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 24 24 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 25 25 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 26 26 H 0.97004 * 119.99097 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47308 * 59.99389 * 14 13 2 28 28 H 1.09003 * 109.47450 * 179.97438 * 14 13 2 29 29 H 1.09004 * 109.46397 * 300.00010 * 14 13 2 30 30 H 1.08995 * 110.99558 * 272.13204 * 17 15 13 31 31 H 1.09000 * 110.98793 * 35.95247 * 17 15 13 32 32 H 1.08996 * 110.42839 * 204.23838 * 18 17 15 33 33 H 1.09005 * 110.30940 * 82.02314 * 18 17 15 34 34 H 1.00902 * 110.99880 * 146.24032 * 19 18 17 35 35 H 1.08999 * 109.88733 * 239.60303 * 20 19 18 36 36 H 1.08998 * 109.88890 * 118.41791 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0856 -0.5395 7 6 4.2303 -1.1927 -2.3584 8 7 5.5410 -1.0995 -2.4139 9 14 3.3013 -2.1077 -3.6960 10 1 2.9398 -1.1624 -4.7827 11 1 4.1601 -3.1878 -4.2448 12 1 2.0658 -2.7002 -3.1239 13 7 2.0196 -0.6925 1.1994 14 6 1.5283 -2.0761 1.2459 15 6 1.6487 0.0391 2.4180 16 1 0.5658 0.1394 2.4910 17 6 2.2203 -0.6656 3.6764 18 6 2.3343 0.5191 4.6712 19 7 2.7457 1.6728 3.8432 20 6 2.3284 1.4241 2.4511 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7516 -1.7715 -1.2057 25 1 1.6054 -0.2617 -2.1370 26 1 6.0253 -1.5063 -3.1495 27 1 1.8761 -2.6151 0.3646 28 1 1.9060 -2.5659 2.1435 29 1 0.4384 -2.0742 1.2638 30 1 1.5309 -1.4246 4.0460 31 1 3.2000 -1.0970 3.4710 32 1 3.0884 0.3079 5.4294 33 1 1.3698 0.7134 5.1403 34 1 2.3451 2.5302 4.1932 35 1 3.2003 1.4251 1.7969 36 1 1.6226 2.1913 2.1330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695786019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:05 Heat of formation + Delta-G solvation = -14.177547 kcal Electronic energy + Delta-G solvation = -15015.296935 eV Core-core repulsion = 12726.369224 eV Total energy + Delta-G solvation = -2288.927710 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41554 -37.76540 -34.79680 -32.71393 -30.32196 -29.62585 -29.34726 -26.14793 -24.62736 -22.36227 -21.56016 -19.86897 -18.77865 -17.72129 -17.51074 -16.39614 -15.86817 -15.28622 -14.82720 -14.55121 -14.35097 -14.00725 -13.94035 -13.50392 -13.30042 -13.15743 -12.97696 -12.48829 -12.34987 -12.18680 -12.17853 -11.74307 -11.71460 -11.46414 -11.33261 -11.04609 -10.66745 -9.36266 -8.87871 -8.16366 -6.15653 1.36727 1.38608 1.49428 2.42223 3.02132 3.21032 3.41752 3.66886 3.96784 4.09040 4.23137 4.34143 4.38027 4.41844 4.51901 4.57482 4.68709 4.75597 4.93318 4.94678 4.98886 5.07021 5.12380 5.15593 5.18939 5.27220 5.32909 5.58775 5.76018 5.91716 6.36919 6.43083 6.55172 6.57750 6.93275 7.44889 9.01269 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.008687 C = 0.008081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.183076 B = 3222.263094 C = 3464.232055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H 0.060 0.940 4 C -0.006 4.006 5 C -0.489 4.489 6 H 0.032 0.968 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.248 1.248 13 N -0.532 5.532 14 C 0.028 3.972 15 C 0.062 3.938 16 H 0.058 0.942 17 C -0.120 4.120 18 C 0.051 3.949 19 N -0.695 5.695 20 C 0.059 3.941 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.260 0.740 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.349 0.651 35 H 0.048 0.952 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 1.380 11.342 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 H 0.078 0.922 4 C -0.043 4.043 5 C -0.528 4.528 6 H 0.051 0.949 7 C -0.199 4.199 8 N -0.601 5.601 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.172 1.172 13 N -0.256 5.256 14 C -0.119 4.119 15 C -0.047 4.047 16 H 0.075 0.925 17 C -0.158 4.158 18 C -0.077 4.077 19 N -0.326 5.326 20 C -0.070 4.070 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.066 0.934 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.114 1.115 11.138 16.494 hybrid contribution -1.336 -0.179 -0.877 1.608 sum -13.450 0.937 10.261 16.943 Atomic orbital electron populations 1.22402 0.96569 1.02200 1.02342 1.21499 0.92276 0.97292 0.90129 0.92202 1.19662 0.94568 0.96181 0.93922 1.21284 0.92011 1.32442 1.07027 0.94929 1.25976 0.95513 0.97645 1.00804 1.70103 1.08527 1.47984 1.33520 0.85738 0.79252 0.78652 0.79390 1.19516 1.21597 1.17158 1.62046 1.60074 1.02371 1.01101 1.22338 0.97695 0.89753 1.02159 1.22904 0.97148 0.94047 0.90601 0.92451 1.22794 1.01412 0.97892 0.93705 1.22855 1.00020 0.89362 0.95504 1.61744 1.63047 1.06014 1.01815 1.22465 0.98275 0.95590 0.90685 0.92186 0.91822 0.91681 0.95977 0.96354 0.93093 0.92995 0.91061 0.94371 0.89195 0.92228 0.89875 0.91804 0.83452 0.93360 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.18 8.51 71.98 0.61 -4.57 16 2 C 0.10 3.72 2.14 44.92 0.10 3.82 16 3 H 0.06 2.48 6.99 -2.38 -0.02 2.46 16 4 C -0.01 -0.28 3.33 29.85 0.10 -0.18 16 5 C -0.49 -28.71 9.39 25.60 0.24 -28.47 16 6 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 7 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 8 N -0.96 -62.39 13.96 21.45 0.30 -62.09 16 9 Si 0.95 45.46 27.47 68.60 1.88 47.35 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 13 N -0.53 -19.79 4.29 -864.89 -3.71 -23.49 16 14 C 0.03 0.94 8.62 127.69 1.10 2.04 16 15 C 0.06 1.85 2.32 46.10 0.11 1.96 16 16 H 0.06 1.51 6.49 -2.38 -0.02 1.49 16 17 C -0.12 -3.12 5.29 32.05 0.17 -2.95 16 18 C 0.05 1.13 7.57 86.85 0.66 1.79 16 19 N -0.70 -18.32 7.39 -504.05 -3.73 -22.05 16 20 C 0.06 1.84 6.12 86.65 0.53 2.37 16 21 H 0.06 1.69 6.39 -2.39 -0.02 1.67 16 22 H 0.06 1.61 6.53 -2.39 -0.02 1.59 16 23 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.02 1.02 5.23 -2.39 -0.01 1.01 16 25 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 26 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.05 1.99 6.22 -2.39 -0.01 1.98 16 28 H 0.07 2.12 6.87 -2.39 -0.02 2.10 16 29 H 0.04 1.07 6.28 -2.38 -0.01 1.06 16 30 H 0.09 1.90 8.00 -2.39 -0.02 1.88 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.35 7.23 8.91 -89.69 -0.80 6.43 16 35 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.84 272.93 -0.98 -69.82 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.20 Total: 14.47 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 4.08 Total: -24.00 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -7.14 Total: -107.63 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -68.84 -0.98 -69.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.639 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds