Wall clock time and date at job start Mon Mar 30 2020 03:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99709 * 2 1 4 4 H 1.08999 * 110.64998 * 34.30033 * 3 2 1 5 5 C 1.54600 * 110.72487 * 271.14727 * 3 2 1 6 6 C 1.53995 * 105.14038 * 219.50579 * 5 3 2 7 7 N 1.47902 * 107.05816 * 358.77850 * 6 5 3 8 8 C 1.46901 * 111.00434 * 145.84339 * 7 6 5 9 9 H 1.08995 * 109.47707 * 179.82957 * 8 7 6 10 10 C 1.52995 * 109.47042 * 59.82539 * 8 7 6 11 11 C 1.53007 * 109.46585 * 299.82991 * 8 7 6 12 12 C 1.50706 * 109.46853 * 181.88580 * 11 8 7 13 13 H 1.08005 * 119.99695 * 5.08370 * 12 11 8 14 14 C 1.37873 * 120.00129 * 185.08746 * 12 11 8 15 15 N 1.31521 * 119.99881 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47118 * 59.99937 * 16 14 12 18 18 H 1.48499 * 109.46785 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47119 * 299.99802 * 16 14 12 20 20 C 1.49008 * 105.87466 * 25.33207 * 7 6 5 21 21 H 1.08993 * 109.47067 * 299.99714 * 1 2 3 22 22 H 1.08998 * 109.47022 * 59.99967 * 1 2 3 23 23 H 1.08998 * 109.46635 * 180.02562 * 1 2 3 24 24 H 1.00900 * 111.00009 * 236.04713 * 2 1 3 25 25 H 1.08998 * 110.30853 * 338.42309 * 5 3 2 26 26 H 1.08992 * 110.30844 * 100.49381 * 5 3 2 27 27 H 1.09002 * 109.91438 * 118.12362 * 6 5 3 28 28 H 1.08994 * 109.92124 * 239.42483 * 6 5 3 29 29 H 1.09004 * 109.47562 * 180.02562 * 10 8 7 30 30 H 1.09008 * 109.47708 * 300.00426 * 10 8 7 31 31 H 1.08999 * 109.47532 * 60.00121 * 10 8 7 32 32 H 1.08992 * 109.47265 * 301.87790 * 11 8 7 33 33 H 1.08995 * 109.47236 * 61.88581 * 11 8 7 34 34 H 0.96994 * 119.99902 * 179.97438 * 15 14 12 35 35 H 1.08996 * 110.86342 * 202.43039 * 20 7 6 36 36 H 1.08996 * 110.68411 * 79.14893 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3465 2.0322 0.5748 5 6 2.1644 1.8926 -1.4457 6 6 3.4830 2.6879 -1.4349 7 7 4.0068 2.6409 -0.0525 8 6 5.4754 2.6058 -0.0468 9 1 5.8341 2.5746 0.9819 10 6 6.0182 3.8579 -0.7385 11 6 5.9585 1.3607 -0.7934 12 6 7.4637 1.3001 -0.7477 13 1 8.0160 2.0256 -0.1688 14 6 8.1356 0.3186 -1.4449 15 7 7.4630 -0.5651 -2.1495 16 14 10.0013 0.2440 -1.3888 17 1 10.4472 0.0560 0.0151 18 1 10.4762 -0.8940 -2.2163 19 1 10.5636 1.5111 -1.9213 20 6 3.4414 1.4037 0.5557 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.8307 -0.5261 -0.7814 25 1 2.2318 1.0578 -2.1433 26 1 1.3313 2.5422 -1.7134 27 1 4.1982 2.2305 -2.1186 28 1 3.2957 3.7214 -1.7260 29 1 7.1079 3.8317 -0.7347 30 1 5.6594 3.8891 -1.7674 31 1 5.6739 4.7449 -0.2068 32 1 5.5447 0.4701 -0.3206 33 1 5.6281 1.4082 -1.8310 34 1 7.9357 -1.2554 -2.6402 35 1 3.4340 1.4743 1.6433 36 1 3.9985 0.5253 0.2299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:09 Heat of formation + Delta-G solvation = 1.894070 kcal Electronic energy + Delta-G solvation = -14813.036920 eV Core-core repulsion = 12524.806128 eV Total energy + Delta-G solvation = -2288.230793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.07592 -35.80513 -33.19400 -31.68976 -28.75326 -27.94874 -26.74154 -24.13357 -23.34826 -21.78296 -20.34817 -18.43527 -16.68404 -15.90003 -15.27495 -14.69122 -14.30187 -13.81875 -13.55812 -13.23623 -13.15481 -12.64712 -11.91958 -11.88724 -11.63458 -11.52766 -11.32743 -10.87248 -10.82484 -10.78923 -10.58847 -10.38876 -10.17950 -9.75250 -9.57745 -9.08994 -8.32521 -8.26827 -7.48104 -6.00841 -4.02260 3.32802 3.37285 3.39776 4.25056 4.45426 4.81374 5.04996 5.15515 5.29725 5.34197 5.41771 5.53202 5.75379 5.84233 5.90388 6.02202 6.07342 6.21842 6.31333 6.38859 6.40943 6.46834 6.52747 6.87057 6.95995 7.03032 7.13954 7.43716 7.51925 7.57871 7.76371 7.84227 8.02403 8.43543 9.03165 9.60892 11.10307 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.007839 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.194999 B = 3571.249545 C = 3980.455519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.688 5.688 3 C 0.084 3.916 4 H 0.084 0.916 5 C -0.157 4.157 6 C 0.032 3.968 7 N -0.518 5.518 8 C 0.070 3.930 9 H 0.069 0.931 10 C -0.127 4.127 11 C -0.005 4.005 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.039 3.961 21 H 0.062 0.938 22 H 0.019 0.981 23 H 0.064 0.936 24 H 0.345 0.655 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.018 0.982 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.758 3.676 1.849 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.318 5.318 3 C -0.026 4.026 4 H 0.102 0.898 5 C -0.197 4.197 6 C -0.097 4.097 7 N -0.243 5.243 8 C -0.038 4.038 9 H 0.087 0.913 10 C -0.185 4.185 11 C -0.043 4.043 12 C -0.552 4.552 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.089 4.089 21 H 0.081 0.919 22 H 0.037 0.963 23 H 0.082 0.918 24 H 0.163 0.837 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.840 3.921 2.722 11.844 hybrid contribution 1.128 -0.608 -1.511 1.981 sum -9.712 3.312 1.211 10.332 Atomic orbital electron populations 1.22172 0.88303 1.01439 1.00066 1.60406 1.07235 1.13817 1.50364 1.22533 0.96848 0.88449 0.94805 0.89822 1.23098 0.98380 1.00255 0.97937 1.22797 0.94988 0.99428 0.92450 1.65219 1.09128 1.35124 1.14787 1.21914 0.84818 0.97136 0.99949 0.91254 1.21687 1.01477 0.96053 0.99253 1.19726 0.96471 0.92265 0.95795 1.21121 0.91655 1.13081 1.29387 0.92557 1.25010 0.98253 0.95689 0.95431 1.69951 1.35456 1.16656 1.31453 0.86677 0.85924 0.77489 0.78046 1.20232 1.21370 1.20268 1.23297 0.92814 0.93497 0.99338 0.91942 0.96277 0.91754 0.83651 0.91777 0.92008 0.91869 0.91582 0.91560 0.93723 0.94331 0.96360 0.95862 0.93024 0.90674 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 60.07 0.63 0.97 16 2 N -0.69 -9.56 6.72 -112.02 -0.75 -10.32 16 3 C 0.08 1.26 3.35 -65.85 -0.22 1.04 16 4 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 5 C -0.16 -2.32 6.62 -25.37 -0.17 -2.49 16 6 C 0.03 0.56 5.17 -2.75 -0.01 0.54 16 7 N -0.52 -9.70 5.33 -222.08 -1.18 -10.89 16 8 C 0.07 1.48 2.54 -67.71 -0.17 1.30 16 9 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 10 C -0.13 -2.50 8.86 37.16 0.33 -2.17 16 11 C 0.00 -0.12 3.85 -27.88 -0.11 -0.23 16 12 C -0.51 -14.26 8.28 -34.44 -0.29 -14.55 16 13 H 0.06 1.52 7.04 -52.48 -0.37 1.15 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.04 0.69 6.10 -1.63 -0.01 0.68 16 21 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 22 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.34 4.82 8.21 -39.29 -0.32 4.49 16 25 H 0.06 0.95 7.57 -51.93 -0.39 0.56 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.27 5.32 -51.93 -0.28 0.99 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.36 6.85 -51.93 -0.36 1.01 16 30 H 0.04 0.86 7.05 -51.92 -0.37 0.50 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.02 0.50 5.91 -51.93 -0.31 0.19 16 33 H 0.02 0.63 6.07 -51.93 -0.32 0.32 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.42 5.55 -51.93 -0.29 1.13 16 LS Contribution 277.78 15.07 4.19 4.19 Total: -1.00 -29.00 277.78 -8.06 -37.06 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.91 Total: 2.68 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.11 Total: -13.37 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -1.20 Total: -47.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.00 -8.06 -37.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.958 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds