Wall clock time and date at job start Mon Mar 30 2020 03:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99709 * 2 1 4 4 H 1.08999 * 110.64998 * 34.30033 * 3 2 1 5 5 C 1.54600 * 110.72487 * 271.14727 * 3 2 1 6 6 C 1.53995 * 105.14038 * 219.50579 * 5 3 2 7 7 N 1.47902 * 107.05816 * 358.77850 * 6 5 3 8 8 C 1.46901 * 111.00434 * 145.84339 * 7 6 5 9 9 H 1.08995 * 109.47707 * 179.82957 * 8 7 6 10 10 C 1.52995 * 109.47042 * 59.82539 * 8 7 6 11 11 C 1.53007 * 109.46585 * 299.82991 * 8 7 6 12 12 C 1.50706 * 109.46853 * 181.88580 * 11 8 7 13 13 H 1.08005 * 119.99695 * 5.08370 * 12 11 8 14 14 C 1.37873 * 120.00129 * 185.08746 * 12 11 8 15 15 N 1.31521 * 119.99881 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47118 * 59.99937 * 16 14 12 18 18 H 1.48499 * 109.46785 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47119 * 299.99802 * 16 14 12 20 20 C 1.49008 * 105.87466 * 25.33207 * 7 6 5 21 21 H 1.08993 * 109.47067 * 299.99714 * 1 2 3 22 22 H 1.08998 * 109.47022 * 59.99967 * 1 2 3 23 23 H 1.08998 * 109.46635 * 180.02562 * 1 2 3 24 24 H 1.00900 * 111.00009 * 236.04713 * 2 1 3 25 25 H 1.08998 * 110.30853 * 338.42309 * 5 3 2 26 26 H 1.08992 * 110.30844 * 100.49381 * 5 3 2 27 27 H 1.09002 * 109.91438 * 118.12362 * 6 5 3 28 28 H 1.08994 * 109.92124 * 239.42483 * 6 5 3 29 29 H 1.09004 * 109.47562 * 180.02562 * 10 8 7 30 30 H 1.09008 * 109.47708 * 300.00426 * 10 8 7 31 31 H 1.08999 * 109.47532 * 60.00121 * 10 8 7 32 32 H 1.08992 * 109.47265 * 301.87790 * 11 8 7 33 33 H 1.08995 * 109.47236 * 61.88581 * 11 8 7 34 34 H 0.96994 * 119.99902 * 179.97438 * 15 14 12 35 35 H 1.08996 * 110.86342 * 202.43039 * 20 7 6 36 36 H 1.08996 * 110.68411 * 79.14893 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3465 2.0322 0.5748 5 6 2.1644 1.8926 -1.4457 6 6 3.4830 2.6879 -1.4349 7 7 4.0068 2.6409 -0.0525 8 6 5.4754 2.6058 -0.0468 9 1 5.8341 2.5746 0.9819 10 6 6.0182 3.8579 -0.7385 11 6 5.9585 1.3607 -0.7934 12 6 7.4637 1.3001 -0.7477 13 1 8.0160 2.0256 -0.1688 14 6 8.1356 0.3186 -1.4449 15 7 7.4630 -0.5651 -2.1495 16 14 10.0013 0.2440 -1.3888 17 1 10.4472 0.0560 0.0151 18 1 10.4762 -0.8940 -2.2163 19 1 10.5636 1.5111 -1.9213 20 6 3.4414 1.4037 0.5557 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.8307 -0.5261 -0.7814 25 1 2.2318 1.0578 -2.1433 26 1 1.3313 2.5422 -1.7134 27 1 4.1982 2.2305 -2.1186 28 1 3.2957 3.7214 -1.7260 29 1 7.1079 3.8317 -0.7347 30 1 5.6594 3.8891 -1.7674 31 1 5.6739 4.7449 -0.2068 32 1 5.5447 0.4701 -0.3206 33 1 5.6281 1.4082 -1.8310 34 1 7.9357 -1.2554 -2.6402 35 1 3.4340 1.4743 1.6433 36 1 3.9985 0.5253 0.2299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:09 Heat of formation + Delta-G solvation = -19.269403 kcal Electronic energy + Delta-G solvation = -14813.954637 eV Core-core repulsion = 12524.806128 eV Total energy + Delta-G solvation = -2289.148510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52505 -37.18609 -35.03971 -33.38022 -30.19164 -29.58039 -28.38740 -25.44212 -25.10372 -23.35200 -21.61907 -20.08271 -18.72158 -17.17279 -16.81418 -16.54429 -15.72093 -15.37557 -14.80945 -14.77897 -14.59560 -14.12866 -13.74603 -13.36852 -13.13297 -12.86798 -12.69807 -12.61072 -12.59249 -12.26857 -12.20894 -11.98559 -11.66164 -11.53185 -11.36639 -11.17739 -10.49200 -9.34705 -9.13279 -8.18785 -6.28311 1.39212 1.41653 1.49250 2.40512 3.01282 3.13939 3.46077 3.75766 3.89012 4.08147 4.28523 4.39983 4.50267 4.56001 4.66131 4.69587 4.72485 4.79887 4.87535 5.01929 5.05050 5.08349 5.11836 5.15714 5.22516 5.39753 5.53254 5.58659 5.75148 6.01337 6.08996 6.19974 6.38093 6.39090 6.86875 7.39348 8.92139 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.007839 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.194999 B = 3571.249545 C = 3980.455519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.701 5.701 3 C 0.096 3.904 4 H 0.100 0.900 5 C -0.149 4.149 6 C 0.030 3.970 7 N -0.511 5.511 8 C 0.077 3.923 9 H 0.063 0.937 10 C -0.119 4.119 11 C 0.008 3.992 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.960 3.040 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.035 3.965 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.341 0.659 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.065 0.935 32 H -0.009 1.009 33 H -0.002 1.002 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 4.744 2.247 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.331 5.331 3 C -0.014 4.014 4 H 0.118 0.882 5 C -0.189 4.189 6 C -0.098 4.098 7 N -0.234 5.234 8 C -0.031 4.031 9 H 0.081 0.919 10 C -0.177 4.177 11 C -0.030 4.030 12 C -0.569 4.569 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.093 4.093 21 H 0.088 0.912 22 H 0.047 0.953 23 H 0.094 0.906 24 H 0.160 0.840 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.009 0.991 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.498 5.000 3.130 12.923 hybrid contribution 1.275 -0.966 -1.621 2.277 sum -10.223 4.035 1.509 11.094 Atomic orbital electron populations 1.22246 0.86149 1.02580 1.00865 1.60379 1.09255 1.13065 1.50415 1.22407 0.94962 0.89443 0.94639 0.88226 1.23062 0.97703 1.00202 0.97898 1.22838 0.95515 1.00632 0.90807 1.65239 1.07268 1.35246 1.15652 1.21731 0.86596 0.95886 0.98929 0.91872 1.21593 1.00577 0.96161 0.99327 1.19556 0.95474 0.93377 0.94582 1.21544 0.93021 1.13136 1.29221 0.92052 1.25917 1.03426 0.95281 0.95027 1.70093 1.37462 1.17387 1.32383 0.85574 0.79745 0.77822 0.78376 1.19344 1.21093 1.19115 1.23310 0.94663 0.91708 0.99617 0.91183 0.95279 0.90571 0.84033 0.92274 0.89185 0.95171 0.89783 0.92789 0.93897 0.91639 0.99119 0.98354 0.93001 0.90285 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.57 127.69 1.35 1.95 16 2 N -0.70 -18.68 6.72 -508.33 -3.42 -22.09 16 3 C 0.10 2.74 3.35 46.13 0.15 2.89 16 4 H 0.10 2.56 7.86 -2.39 -0.02 2.54 16 5 C -0.15 -4.18 6.62 31.48 0.21 -3.97 16 6 C 0.03 1.04 5.17 86.45 0.45 1.49 16 7 N -0.51 -18.88 5.33 -856.54 -4.57 -23.45 16 8 C 0.08 3.30 2.54 44.92 0.11 3.41 16 9 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 10 C -0.12 -4.59 8.86 71.98 0.64 -3.95 16 11 C 0.01 0.42 3.85 29.85 0.11 0.54 16 12 C -0.53 -30.03 8.28 25.60 0.21 -29.82 16 13 H 0.06 3.33 7.04 -2.91 -0.02 3.31 16 14 C 0.00 0.06 5.46 84.65 0.46 0.53 16 15 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 16 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.04 1.27 6.10 86.56 0.53 1.80 16 21 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 22 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.34 9.45 8.21 -89.69 -0.74 8.71 16 25 H 0.06 1.72 7.57 -2.39 -0.02 1.70 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.03 1.24 5.32 -2.39 -0.01 1.23 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.05 2.19 6.85 -2.39 -0.02 2.17 16 30 H 0.04 1.64 7.05 -2.38 -0.02 1.62 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H -0.01 -0.54 5.91 -2.39 -0.01 -0.55 16 33 H 0.00 -0.10 6.07 -2.39 -0.01 -0.11 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.03 1.48 5.55 -2.39 -0.01 1.46 16 Total: -1.00 -62.75 277.78 -1.13 -63.88 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.31 Total: 16.91 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.23 Total: -25.13 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -7.70 Total: -102.22 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.75 -1.13 -63.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.610 kcal (2) G-P(sol) polarization free energy of solvation -62.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds